Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

79739312 .. 79741684

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGAATCGAATTAACCCTGAATTGAAGTATTCTTTTCTACTAGTACCATTCACCACAGCTCGGCTTTCGCACTCGGAATTCACTTACAGATTTCCCGTCAGTCCAGGCCAGAAGTTCATCCGCTTGTATTTCTTCGCAGCTTCATACAACGCGGACTTCGACAGCTCGAAATCACTTTTCTCTGTCAAAGCCGGTGGCTACACACTTCTAAAGGACTTCAACGCATCTCTCAGTAGTGCATCTTACGATGGCTCTGAGACGCTATTCAGAGAATACTGCGTCAACTTTGAGCCAGAAGACCGGAGTCTGAACATCACATTCACTCCCAGCAAGGATGGATATGCGTTTATCAACGGGGTCGAAATCATGTCCATGCCAACTAATCTTTACTACTCGGCAGCCCAAGGCGACGGGGCTAGTTATCTTGGCAACAGCGGTACCGGATATTACGTTCAAAACGACACCGCTATGGAGATGATCTACCGAATCAACGTTGGTGGCGGACCGTTATCTCCGAATGAAGACACCGGCATGTACCGCACCTGGCAAGCAGCAGACGATCTCTACTTAGATAATATAAGTAGCAGTTTGAGCTTTGTTGAACCACCCAATAATATTCATCTCAATTTTGCAAGCATCCCCAACTACAGTGCGCCGGAAGCGGTGTACCGAACCGGCCGGACAATGGGATCTAACCAGACCAGCAACAAAAGCTTCAATCTCACCTGGGGGTTCCCGGTAGATCCTCAATTTTCTTACCTGGTGAGGCTCCATTTCTGTGAGGTTGATCCCGATATTACCGAGCCTAGAAATAGAATGTTTCAGATTTTCATAGCGAATTTAACAGCTGAGCTGCATGCGGACATAATCAGATGGACTATAGAAAATGGAAAAGGAAATGGGATTCCCATATATAAGGACTACTTTGTGCCCATGGGGAGTCTTGCAACCCGGAAGAAAGGTTTAGGTAAACTCTTTGTTGAGCTACAAGCAAATAAAGACGATACGGAAAAAATTCTATTTGACAGTCCACTCTTGAATGGGCTCGAAATCTTCAGACTAAATGACACAGACGGCAATCTCAGCGGACCCTTCCCCGAGCAAACGCTGGATATCCCACAAAAGGTGACGTCGGAAAGCTCTAGAAATTCGACTCCTATGCTTGCCATCCTCGCCGGTGTAGTTTTAGCCTTACTTGTTCTTTCCTTCGTCGGGTTTTTAGTTTTCAGGCGTGGAAGAAAAGTCAAGGATTCCAACTCCAGCCACAGGATGTCGACGTCAACCATGACCCTTCGGTCACCTTTTCCATCTTATTTGTGCCATGACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAAAACTTTGATGACACTTTAATCGTTGGAGTAGGTGGGTTTGGCCATGTCTACAAAGGATACTTCGACAATGGGGCCACCCTTGTGGCAATCAAACGGCTTAAAGCCACTTCATTGCAGGGCGCCCACGAGTTCATGACGGAAATCAAAATGCTCTCCCGATTGCGCCACCGCCATTTGGTTTCTCTTATAGGATTTTGTGCCGATCAAGGTGAGATGATCTTAGTCTATGATTACATGGCACGTGGGACCCTCAGTGATCATTTGCACCGGACCAAGGAACCACATCTTCCTTGGAAACTACGGCTTCAGATTTGTATCGGTGCAGCACAAGGTTTGCACTACCTTCACACAAGTACCGAAGGCACCATCATTCACCGTGACGTAAAGAGTGCAAACATATTATTAGACGAGAAATGGGTAGCGAAGGTTTCGGATTTTGGGTTGTCAAAAAAGGGCATTATCACAATATCCAAGACCCACATTAGCACGAAGGTGAAGGGTAGTTTTGGATATCTTGACCCTGATTACTACCGACGTCAACAATTGACTGAGAAGTCTGACGTGTATTCATTCGGAGTTGTGTTATGCGAGGTATTGTGTGGGAGGCCAGCTGTGACCGTTGTAGATAATAATAGAGTTGGGTTAGCTGGATGGGTTAAGAAGTGTCATCATGAAGGGAAACTTGATCAAGTTTTTGACCCAAATTTGAAGGGTGAAATTGCATTGCGATGCTTGCATAGATTTGTTTCCATCGCAATCAGTTGCATGGATGATAATGGGATCAATCGACCGTCAATGGATAATGTTGTGAGAGGGCTTCAATTTGCATTGGAAATGCAACAGAACAACGAGAATTATATTGATCACATTGAAAGGACGGTTCAAGATGAGATTGGATTGATCAAGCACAATGAAGGGTCTAGTTCTAGTAAGCAAAGCAATGGGGCGAAAGAATCCATCCAATGGTTGACCGGGACAATCTTCTCCGAGATAATCAATCCAGTTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

790

Amino Acids

88.44

Weight (kDa)

6.9

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	3 - 353	9.3e-26	Malectin-like domain
Pkinase	PF00069	460 - 722	2.6e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	461 - 724	1.8e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1294, 1912
AatII	GACGTC	3 cut(s)	1133, 1280, 1897
Acc65I	GGTACC	1 cut(s)	437
AccB1I	GGYRCC	3 cut(s)	437, 1478, 1721
AccB7I	CCANNNNNTGG	1 cut(s)	2322
AccI	GTMKAC	2 cut(s)	1274, 1407
AccII	CGCG	1 cut(s)	152
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	4 cut(s)	697, 737, 782, 2147
AcoI	YGGCCR	2 cut(s)	676, 1399
AcsI	RAATTY	5 cut(s)	77, 838, 1014, 1147, 2062
AcuI	CTGAAG	2 cut(s)	1039, 1649
AcvI	CACGTG	1 cut(s)	1601
AcyI	GRCGYC	4 cut(s)	1130, 1277, 1479, 1894
AfaI	GTAC	5 cut(s)	45, 439, 536, 668, 1714
AfiI	CCNNNNNNNGG	8 cut(s)	60, 685, 1123, 1212, 1266, 1534, 1633, 2322
AflIII	ACRYGT	1 cut(s)	1920
AhlI	ACTAGT	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	1921
AjnI	CCWGG	4 cut(s)	103, 542, 725, 759
AleI	CACNNNNGTG	2 cut(s)	1439, 1850
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	4 cut(s)	697, 737, 782, 2147
Ama87I	CYCGRG	1 cut(s)	1097
AoxI	GGCC	5 cut(s)	106, 676, 1399, 1431, 1964
ApeKI	GCWGC	5 cut(s)	137, 398, 551, 853, 1682
ApoI	RAATTY	5 cut(s)	77, 838, 1014, 1147, 2062
Asp700I	GAANNNNTTC	1 cut(s)	1014
Asp718I	GGTACC	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	655, 1481, 1524
AspS9I	GGNCC	5 cut(s)	503, 1088, 1431, 1605, 1629
AsuC2I	CCSGG	3 cut(s)	737, 952, 2332
AsuHPI	GGTGA	9 cut(s)	43, 715, 775, 1138, 1290, 1580, 1724, 1864, 2084
AvaI	CYCGRG	1 cut(s)	1097
AvaII	GGWCC	4 cut(s)	503, 1088, 1605, 1629
BaeGI	GKGCMC	1 cut(s)	933
BaeI	ACNNNNGTAYC	4 cut(s)	421, 454, 1696, 1729
BalI	TGGCCA	1 cut(s)	1401
BanI	GGYRCC	3 cut(s)	437, 1478, 1721
BanII	GRGCYC	1 cut(s)	1047
BauI	CACGAG	1 cut(s)	1484
BbrPI	CACGTG	1 cut(s)	1601
BbsI	GAAGAC	2 cut(s)	303, 528
BbvI	GCAGC	5 cut(s)	149, 410, 563, 840, 1694
BccI	CCATC	9 cut(s)	242, 329, 867, 1175, 1315, 1733, 2004, 2117, 2324
BceAI	ACGGC	3 cut(s)	1090, 1469, 1676
BcgI	CGANNNNNNTGC	2 cut(s)	1141, 1175
BciT130I	CCWGG	4 cut(s)	105, 544, 727, 761
BciVI	GTATCC	1 cut(s)	1409
BclI	TGATCA	4 cut(s)	1615, 2044, 2221, 2259
BcnI	CCSGG	3 cut(s)	737, 952, 2332
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	6 cut(s)	41, 417, 807, 1143, 2280, 2286
BfmI	CTRYAG	2 cut(s)	646, 879
BfoI	RGCGCY	1 cut(s)	1482
BfuI	GTATCC	1 cut(s)	1409
BisI	GCNGC	6 cut(s)	138, 399, 552, 854, 1350, 1683
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	6 cut(s)	139, 400, 553, 855, 1351, 1684
Bme1390I	CCNGG	7 cut(s)	105, 544, 727, 737, 761, 952, 2332
Bme18I	GGWCC	4 cut(s)	503, 1088, 1605, 1629
BmeT110I	CYCGRG	1 cut(s)	1097
BmgBI	CACGTC	1 cut(s)	1921
BmgT120I	GGNCC	5 cut(s)	503, 1088, 1431, 1605, 1629
BmrFI	CCNGG	7 cut(s)	105, 544, 727, 737, 761, 952, 2332
BmsI	GCATC	4 cut(s)	233, 248, 645, 2078
BoxI	GACNNNNGTC	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	303, 528
BpmI	CTGGAG	1 cut(s)	1243
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuMI	CCSGG	3 cut(s)	737, 952, 2332
BsaAI	YACGTR	1 cut(s)	1601
BsaBI	GATNNNNATC	1 cut(s)	1673
BsaHI	GRCGYC	4 cut(s)	1130, 1277, 1479, 1894
BsaJI	CCNNGG	5 cut(s)	403, 726, 933, 1632, 1649
BsaWI	WCCGGW	3 cut(s)	300, 440, 1626
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	8 cut(s)	60, 685, 1123, 1212, 1266, 1534, 1633, 2322
Bse118I	RCCGGY	4 cut(s)	191, 527, 674, 1175
Bse1I	ACTGG	2 cut(s)	1338, 2360
Bse3DI	GCAATG	3 cut(s)	1469, 2081, 2305
Bse8I	GATNNNNATC	1 cut(s)	1673
BseBI	CCWGG	4 cut(s)	105, 544, 727, 761
BseDI	CCNNGG	5 cut(s)	403, 726, 933, 1632, 1649
BseGI	GGATG	8 cut(s)	117, 340, 636, 1167, 1275, 2015, 2134, 2316
BseJI	GATNNNNATC	1 cut(s)	1673
BseLI	CCNNNNNNNGG	8 cut(s)	60, 685, 1123, 1212, 1266, 1534, 1633, 2322
BseMI	GCAATG	3 cut(s)	1469, 2081, 2305
BseMII	CTCAG	6 cut(s)	244, 246, 840, 1096, 1624, 1899
BseNI	ACTGG	2 cut(s)	1338, 2360
BseSI	GKGCMC	1 cut(s)	933
BseX3I	CGGCCG	1 cut(s)	676
BseXI	GCAGC	5 cut(s)	149, 410, 563, 840, 1694
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	1701
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	679, 2150
BshFI	GGCC	5 cut(s)	108, 678, 1401, 1433, 1966
BshNI	GGYRCC	3 cut(s)	437, 1478, 1721
BsiEI	CGRYCG	2 cut(s)	679, 2150
BsiHKCI	CYCGRG	1 cut(s)	1097
BslFI	GGGAC	2 cut(s)	1618, 2347
BslI	CCNNNNNNNGG	8 cut(s)	60, 685, 1123, 1212, 1266, 1534, 1633, 2322
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	1618, 2347
BsnI	GGCC	5 cut(s)	108, 678, 1401, 1433, 1966
BsoBI	CYCGRG	1 cut(s)	1097
Bsp1286I	GDGCHC	2 cut(s)	933, 1047
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp19I	CCATGG	1 cut(s)	933
BspANI	GGCC	5 cut(s)	108, 678, 1401, 1433, 1966
BspCNI	CTCAG	6 cut(s)	243, 247, 841, 1095, 1623, 1900
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	2 cut(s)	1491, 2029
BspPI	GGATC	4 cut(s)	697, 737, 782, 2147
BspT107I	GGYRCC	3 cut(s)	437, 1478, 1721
BsrDI	GCAATG	3 cut(s)	1469, 2081, 2305
BsrFI	RCCGGY	4 cut(s)	191, 527, 674, 1175
BsrI	ACTGG	2 cut(s)	1338, 2360
BssAI	RCCGGY	4 cut(s)	191, 527, 674, 1175
BssECI	CCNNGG	5 cut(s)	403, 726, 933, 1632, 1649
BssNI	GRCGYC	4 cut(s)	1130, 1277, 1479, 1894
BssSI	CACGAG	1 cut(s)	1484
BssT1I	CCWWGG	4 cut(s)	403, 933, 1632, 1649
Bst2BI	CACGAG	1 cut(s)	1484
Bst2UI	CCWGG	4 cut(s)	105, 544, 727, 761
Bst4CI	ACNGT	7 cut(s)	507, 650, 1028, 1736, 1978, 2151, 2239
BstACI	GRCGYC	4 cut(s)	1130, 1277, 1479, 1894
BstBAI	YACGTR	1 cut(s)	1601
BstC8I	GCNNGC	6 cut(s)	549, 634, 858, 1164, 1968, 2093
BstDEI	CTNAG	8 cut(s)	230, 255, 568, 849, 1082, 1579, 1610, 1908
BstDSI	CCRYGG	1 cut(s)	933
BstEII	GGTNACC	1 cut(s)	1296
BstF5I	GGATG	8 cut(s)	117, 340, 636, 1167, 1275, 2015, 2134, 2316
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	1482
BstHHI	GCGC	3 cut(s)	655, 1481, 1524
BstMAI	GTCTC	1 cut(s)	251
BstMCI	CGRYCG	2 cut(s)	679, 2150
BstMWI	GCNNNNNNNGC	7 cut(s)	537, 591, 659, 711, 1083, 1172, 2092
BstNI	CCWGG	4 cut(s)	105, 544, 727, 761
BstNSI	RCATGY	2 cut(s)	535, 860
BstPAI	GACNNNNGTC	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	1296
BstSCI	CCNGG	7 cut(s)	103, 542, 725, 735, 759, 950, 2330
BstSFI	CTRYAG	2 cut(s)	646, 879
BstSLI	GKGCMC	1 cut(s)	933
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	5 cut(s)	149, 410, 563, 840, 1694
BstV2I	GAAGAC	2 cut(s)	303, 528
BstX2I	RGATCY	2 cut(s)	689, 742
BstXI	CCANNNNNNTGG	1 cut(s)	1441
BstYI	RGATCY	2 cut(s)	689, 742
BstZI	CGGCCG	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	5 cut(s)	108, 678, 1401, 1433, 1966
BtgI	CCRYGG	1 cut(s)	933
BtgZI	GCGATG	2 cut(s)	2095, 2101
BtrI	CACGTC	1 cut(s)	1921
BtsCI	GGATG	8 cut(s)	117, 340, 636, 1167, 1275, 2015, 2134, 2316
BtsIMutI	CAGTG	3 cut(s)	655, 1331, 1618
Cac8I	GCNNGC	6 cut(s)	549, 634, 858, 1164, 1968, 2093
CciI	TCATGA	2 cut(s)	1491, 2029
CfoI	GCGC	3 cut(s)	655, 1481, 1524
Cfr10I	RCCGGY	4 cut(s)	191, 527, 674, 1175
Cfr13I	GGNCC	5 cut(s)	503, 1088, 1431, 1605, 1629
CpoI	CGGWCCG	1 cut(s)	503
CseI	GACGC	2 cut(s)	268, 268
CsiI	ACCWGGT	1 cut(s)	759
Csp6I	GTAC	5 cut(s)	44, 438, 535, 667, 1713
CspCI	CAANNNNNGTGG	4 cut(s)	175, 210, 478, 513
CspI	CGGWCCG	1 cut(s)	503
CviQI	GTAC	5 cut(s)	44, 438, 535, 667, 1713
DdeI	CTNAG	8 cut(s)	230, 255, 568, 849, 1082, 1579, 1610, 1908
DinI	GGCGCC	1 cut(s)	1480
DrdI	GACNNNNNNGTC	2 cut(s)	1294, 1912
DseDI	GACNNNNNNGTC	2 cut(s)	1294, 1912
EaeI	YGGCCR	2 cut(s)	676, 1399
EagI	CGGCCG	1 cut(s)	676
EciI	GGCGGA	1 cut(s)	516
EclXI	CGGCCG	1 cut(s)	676
Eco130I	CCWWGG	4 cut(s)	403, 933, 1632, 1649
Eco24I	GRGCYC	1 cut(s)	1047
Eco32I	GATATC	2 cut(s)	1114, 1871
Eco47I	GGWCC	4 cut(s)	503, 1088, 1605, 1629
Eco52I	CGGCCG	1 cut(s)	676
Eco57I	CTGAAG	2 cut(s)	1039, 1649
Eco72I	CACGTG	1 cut(s)	1601
Eco88I	CYCGRG	1 cut(s)	1097
Eco91I	GGTNACC	1 cut(s)	1296
EcoO109I	RGGNCCY	1 cut(s)	1605
EcoO65I	GGTNACC	1 cut(s)	1296
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	4 cut(s)	103, 542, 725, 759
EcoRV	GATATC	2 cut(s)	1114, 1871
EcoT14I	CCWWGG	4 cut(s)	403, 933, 1632, 1649
EcoT38I	GRGCYC	1 cut(s)	1047
EgeI	GGCGCC	1 cut(s)	1480
EheI	GGCGCC	1 cut(s)	1480
ErhI	CCWWGG	4 cut(s)	403, 933, 1632, 1649
Esp3I	CGTCTC	1 cut(s)	251
FalI	AAGNNNNNCTT	4 cut(s)	908, 940, 2025, 2057
FaqI	GGGAC	2 cut(s)	1618, 2347
FbaI	TGATCA	4 cut(s)	1615, 2044, 2221, 2259
FblI	GTMKAC	2 cut(s)	1274, 1407
Fnu4HI	GCNGC	6 cut(s)	138, 399, 552, 854, 1350, 1683
FokI	GGATG	8 cut(s)	104, 347, 623, 1154, 1282, 2022, 2141, 2303
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	6 cut(s)	138, 399, 552, 854, 1350, 1683
FspBI	CTAG	6 cut(s)	41, 417, 807, 1143, 2280, 2286
GlaI	GCGC	3 cut(s)	654, 1480, 1523
GluI	GCNGC	6 cut(s)	138, 399, 552, 854, 1350, 1683
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	1243
HaeII	RGCGCY	1 cut(s)	1482
HaeIII	GGCC	5 cut(s)	108, 678, 1401, 1433, 1966
HgaI	GACGC	2 cut(s)	268, 268
HhaI	GCGC	3 cut(s)	655, 1481, 1524
Hin1I	GRCGYC	4 cut(s)	1130, 1277, 1479, 1894
Hin6I	GCGC	3 cut(s)	653, 1479, 1522
HinP1I	GCGC	3 cut(s)	653, 1479, 1522
HincII	GTYRAC	5 cut(s)	283, 1275, 1281, 1898, 2328
HindII	GTYRAC	5 cut(s)	283, 1275, 1281, 1898, 2328
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	8 cut(s)	4, 304, 486, 904, 940, 1153, 1250, 2312
HphI	GGTGA	9 cut(s)	43, 715, 775, 1138, 1290, 1580, 1724, 1864, 2084
Hpy166II	GTNNAC	9 cut(s)	283, 667, 971, 1031, 1275, 1281, 1408, 1898, 2328
Hpy188III	TCNNGA	8 cut(s)	791, 1036, 1143, 1492, 1515, 1874, 2030, 2243
Hpy8I	GTNNAC	9 cut(s)	283, 667, 971, 1031, 1275, 1281, 1408, 1898, 2328
Hpy99I	CGWCG	5 cut(s)	413, 1135, 1214, 1279, 1896
HpyCH4III	ACNGT	7 cut(s)	507, 650, 1028, 1736, 1978, 2151, 2239
HpyCH4IV	ACGT	8 cut(s)	450, 492, 1130, 1277, 1600, 1740, 1894, 1920
HpyF10VI	GCNNNNNNNGC	7 cut(s)	537, 591, 659, 711, 1083, 1172, 2092
HpyF3I	CTNAG	8 cut(s)	230, 255, 568, 849, 1082, 1579, 1610, 1908
HpySE526I	ACGT	8 cut(s)	450, 492, 1130, 1277, 1600, 1740, 1894, 1920
Hsp92I	GRCGYC	4 cut(s)	1130, 1277, 1479, 1894
HspAI	GCGC	3 cut(s)	653, 1479, 1522
KasI	GGCGCC	1 cut(s)	1478
KflI	GGGWCCC	1 cut(s)	1605
KpnI	GGTACC	1 cut(s)	441
Ksp22I	TGATCA	4 cut(s)	1615, 2044, 2221, 2259
LmnI	GCTCC	1 cut(s)	774
Lsp1109I	GCAGC	5 cut(s)	149, 410, 563, 840, 1694
LweI	GCATC	4 cut(s)	233, 248, 645, 2078
MabI	ACCWGGT	1 cut(s)	759
MaeI	CTAG	6 cut(s)	41, 417, 807, 1143, 2280, 2286
MaeII	ACGT	8 cut(s)	450, 492, 1130, 1277, 1600, 1740, 1894, 1920
MaeIII	GTNAC	4 cut(s)	1126, 1296, 1736, 1972
MboII	GAAGA	8 cut(s)	124, 308, 533, 967, 1045, 1248, 1637, 2332
MfeI	CAATTG	1 cut(s)	1901
MflI	RGATCY	2 cut(s)	689, 742
MhlI	GDGCHC	2 cut(s)	933, 1047
MlsI	TGGCCA	1 cut(s)	1401
MluNI	TGGCCA	1 cut(s)	1401
Mly113I	GGCGCC	1 cut(s)	1479
MlyI	GAGTC	3 cut(s)	313, 949, 1147
MmeI	TCCRAC	3 cut(s)	1113, 1278, 1363
MnlI	CCTC	8 cut(s)	756, 759, 775, 1181, 1619, 1942, 1956, 2165
Mox20I	TGGCCA	1 cut(s)	1401
MroXI	GAANNNNTTC	1 cut(s)	1014
MscI	TGGCCA	1 cut(s)	1401
MseI	TTAA	5 cut(s)	12, 842, 1376, 1458, 2016
MslI	CAYNNNNRTG	7 cut(s)	371, 467, 530, 777, 1439, 1850, 2086
Msp20I	TGGCCA	1 cut(s)	1401
MspA1I	CMGCKG	4 cut(s)	435, 848, 1086, 1970
MspR9I	CCNGG	7 cut(s)	105, 544, 727, 737, 761, 952, 2332
MunI	CAATTG	1 cut(s)	1901
MvaI	CCWGG	4 cut(s)	105, 544, 727, 761
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	7 cut(s)	537, 591, 659, 711, 1083, 1172, 2092
NarI	GGCGCC	1 cut(s)	1479
NciI	CCSGG	3 cut(s)	737, 952, 2332
NcoI	CCATGG	1 cut(s)	933
NmeAIII	GCCGAG	2 cut(s)	40, 374
NmuCI	GTSAC	4 cut(s)	1126, 1296, 1736, 1972
NspI	RCATGY	2 cut(s)	535, 860
OliI	CACNNNNGTG	2 cut(s)	1439, 1850
PaeI	GCATGC	1 cut(s)	860
PagI	TCATGA	2 cut(s)	1491, 2029
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 456
PdmI	GAANNNNTTC	1 cut(s)	1014
PfeI	GAWTC	5 cut(s)	4, 486, 904, 1250, 2312
PflMI	CCANNNNNTGG	1 cut(s)	2322
PkrI	GCNGC	6 cut(s)	139, 400, 553, 855, 1351, 1684
PleI	GAGTC	3 cut(s)	312, 948, 1147
PluTI	GGCGCC	1 cut(s)	1482
PmaCI	CACGTG	1 cut(s)	1601
PmlI	CACGTG	1 cut(s)	1601
PpsI	GAGTC	3 cut(s)	312, 948, 1147
Ppu21I	YACGTR	1 cut(s)	1601
PpuMI	RGGWCCY	1 cut(s)	1605
PshAI	GACNNNNGTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	1605
Psp6I	CCWGG	4 cut(s)	103, 542, 725, 759
PspCI	CACGTG	1 cut(s)	1601
PspEI	GGTNACC	1 cut(s)	1296
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	4 cut(s)	103, 542, 725, 759
PspPI	GGNCC	5 cut(s)	503, 1088, 1431, 1605, 1629
PspPPI	RGGWCCY	1 cut(s)	1605
PsuI	RGATCY	2 cut(s)	689, 742
PvuII	CAGCTG	2 cut(s)	848, 1970
RsaI	GTAC	5 cut(s)	45, 439, 536, 668, 1714
RsaNI	GTAC	5 cut(s)	44, 438, 535, 667, 1713
RseI	CAYNNNNRTG	7 cut(s)	371, 467, 530, 777, 1439, 1850, 2086
Rsr2I	CGGWCCG	1 cut(s)	503
RsrII	CGGWCCG	1 cut(s)	503
SalI	GTCGAC	1 cut(s)	1273
SaqAI	TTAA	5 cut(s)	12, 842, 1376, 1458, 2016
SatI	GCNGC	6 cut(s)	138, 399, 552, 854, 1350, 1683
Sau96I	GGNCC	5 cut(s)	503, 1088, 1431, 1605, 1629
SchI	GAGTC	3 cut(s)	313, 949, 1147
ScrFI	CCNGG	7 cut(s)	105, 544, 727, 737, 761, 952, 2332
SduI	GDGCHC	2 cut(s)	933, 1047
SexAI	ACCWGGT	1 cut(s)	759
SfaNI	GCATC	4 cut(s)	233, 248, 645, 2078
SfcI	CTRYAG	2 cut(s)	646, 879
SfoI	GGCGCC	1 cut(s)	1480
SgrAI	CRCCGGYG	1 cut(s)	1175
SinI	GGWCC	4 cut(s)	503, 1088, 1605, 1629
SmiMI	CAYNNNNRTG	7 cut(s)	371, 467, 530, 777, 1439, 1850, 2086
SpeI	ACTAGT	1 cut(s)	40
SphI	GCATGC	1 cut(s)	860
SspDI	GGCGCC	1 cut(s)	1478
SspI	AATATT	1 cut(s)	616
SspMI	CTAG	6 cut(s)	41, 417, 807, 1143, 2280, 2286
StyD4I	CCNGG	7 cut(s)	103, 542, 725, 735, 759, 950, 2330
StyI	CCWWGG	4 cut(s)	403, 933, 1632, 1649
TaaI	ACNGT	7 cut(s)	507, 650, 1028, 1736, 1978, 2151, 2239
TaiI	ACGT	8 cut(s)	453, 495, 1133, 1280, 1603, 1743, 1897, 1923
TaqI	TCGA	9 cut(s)	7, 159, 167, 360, 1047, 1151, 1274, 1422, 2146
TaqII	GACCGA	1 cut(s)	1284
TauI	GCSGC	1 cut(s)	1352
TfiI	GAWTC	5 cut(s)	4, 486, 904, 1250, 2312
Tru1I	TTAA	5 cut(s)	12, 842, 1376, 1458, 2016
Tru9I	TTAA	5 cut(s)	12, 842, 1376, 1458, 2016
TscAI	CASTG	3 cut(s)	655, 1338, 1618
TseFI	GTSAC	4 cut(s)	1126, 1296, 1736, 1972
TseI	GCWGC	5 cut(s)	137, 398, 551, 853, 1682
Tsp45I	GTSAC	4 cut(s)	1126, 1296, 1736, 1972
TspGWI	ACGGA	2 cut(s)	1022, 1511
TspRI	CASTG	3 cut(s)	655, 1338, 1618
Van91I	CCANNNNNTGG	1 cut(s)	2322
VpaK11BI	GGWCC	4 cut(s)	503, 1088, 1605, 1629
XapI	RAATTY	5 cut(s)	77, 838, 1014, 1147, 2062
XbaI	TCTAGA	1 cut(s)	1142
XceI	RCATGY	2 cut(s)	535, 860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1647
XmiI	GTMKAC	2 cut(s)	1274, 1407
XmnI	GAANNNNTTC	1 cut(s)	1014
XspI	CTAG	6 cut(s)	41, 417, 807, 1143, 2280, 2286
ZraI	GACGTC	3 cut(s)	1131, 1278, 1895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.