Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

76002163 .. 76004808

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGAAACCAATCATCACTCCTCTCTACCTCTACTTGTTCCTCCACATCCTCACTCTCTTCGTCACCGGTCAGCCGCCACCATACACTCCGGTCGACAATATCCCAAGTCCCTTACACCAAAGCTCGGCTCTCTCGCTCCAATTCACTTACACAATTCCCCTCTCTCCCGGCCAAAAATTCATCCGCTTACATTTCAATCCAGATACATACACACCGGACTTCCAACGCCCCAACTCCCTCTTCTCCGTCACAACCGCCGGCTTCACTCTCCTCAAAGACTTCAACGCCTCCGTCACCGCCGACGCTTCCGGCGAGTCCCCGCTGGTCAGAGAATTCTGTGTAAACATCGAGACAGGACAGAGACTCGAGATCACCTTCACACCAAGCAAAGATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCAACCAGTTTTTACTACACCGCAGGCGAAAGCCAAGGGATTCGGAATTTAGGCAACGAACAAAACTATTACATTGAAAACAGCACAGCTCTGGAGATGGTGTACCGAATCAACGTCGGCGGAGGCCCCATCCCGCTGGTAGAAGACACCGGAATGTACCGGTATTGGGACTCCCCCGACGATACCTATTTGGATTATGTGAGTAGAGAATTCAGCGTGCTACCACAGAACAATACAATCGAGCTCAATTTCTCCAAAGTTCCAGAATACTCTGCCCCAAAAGCAGTTTACACAACAGGTCGGTCAATGGGGATGAACAAAACCATCAACAAGATCTATAACCTCACATGGGTATTTCCCTTAGATCCCAAGTTTAATTACCTTGTGAGACTCCATTTCTGTGAGTTTGAATCTGATATTACCAAGTACGGAGATCGATCGTTTCAAATCTTCATGGCCAATCAAACCGCAGAAGAACTTGCAGATGTCATCGGATGGAGTGGAGCAAATGGGAATCCAGTTTACAGAGACTACGTTGTGGGAATGTTCATGCCTCCGGTTGGAAGCCAGAAGAAAGTTAACCTCTTTCTAGTACTCTCAGCGCTCCAGAAAGATAGGTTTACTACTTACAACGATGCCATCTTGAACGGGCTAGAAATCTTCAAGCTCAGCAACTCGAGTGGGAGTCTTGCCGGACCCAACCCCGACCCACCCCCGGTGAACGCACCAAAGATACTCCCGAAGAGCCCCAGGAAGAAGAAGTCTACTCCTATGGCAGCTATCATTGCAGGCGTAGTTTCCGGGTTACTTATGCTATCAGTGCTCGGATTTTTTGTTTTCCGGCGAGGGAGAAAGGCCAAGGACTATAGCTCAAGTCAAGTCAAGTGGGGTCCGCTTTCTTTTTCAACAACTACCAAGTCCTCCAAGTCCACCACGTCTTACGGTTCATCTCTGCCGTCCGAGCTGTGTCATCACTTTTCATTGGCGGAGATCAGAGCCGCCACGCAGAACTTTGATGAATCGAACGTTATTGGGCGTGGCGGGTTTGGTAACGTGTACAAAGGTACTATCAACGGTGCGTCCACCCCCTTTGCGATCAAACGGCTGAAAGCAGAGTCGTCACAGGGTGCCCTTGAGTTCAAGACGGAGATCGAATTGCTCTCCCAACTGCGTCACGTCCATCTCGTGTCTCTGGTCGGGTATTGTGACGACAACGGTGAGATGATTTTGGTGTATGACTACATGGAAAATGGGACCCTACGCGATCATTTGTACAACTCCGAAAATCCACCTCTTCCTTGGGAACAAAGGCTTCAAGTTTGTATTGGTGCGGCGCGTGGGTTGCACTACCTTCACACTGGTGTCAAGTGTATGATCATTCACCGAGATGTGAAGAGCACGAACATCTTGTTGGATGATAAATGGGTGGCCAAGGTCGCTGATTTTGGGTTGTCGAAAATGGGCACGACCACCATGTCTAAGACCCACATCAGCACCATGGTCAAGGGTAGTTTCGGCTATCTCGACCCGGAGTACTATCGTCGTCAACAGTTGACTGAGAAGTCTGATGTGTACTCATTCGGAGTAGTATTGTGTGAGGTGTTGTGTGCTAGGCCGGCTTTGATCCGTACAACGGACAAGAAGCAAATGAACCTAGCTGCATGGTTTAAGACCTGTCACGGAAACGGAACGCTTGACCAAATCATTGACCCTAATTTGAGGGGTAAGATTGTAAATGAGTGCTTGGACAAGTTTGTTGAAATTGCAATTAGTTGTATGCATGATAATGGGAGTGAACGACCGTCCATGAATGATGTTATATGGGCGCTTGAGTGTGCATTAAAACTTCAAGAGACCGTAGAGGGTTCGGATTTGGATTTCAATGCCGGAAAGAAGGGTGAAGATGAGGCTTCAATGCTGAATGATAGTGATGCAGGGTTTAGTGGCACATGGGGAGACTCGTCAGGTTCCAATAACAGCAGGGTGACCAAAACTAGTAGTAGTTACCAAAATTCTAGTGCTAGTGATTCCATTAAAGGGTTGTCAGGTACAATCTTCTCTGAGATCTACGAACCCAATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

839

Amino Acids

93.17

Weight (kDa)

6.16

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	48 - 366	7.8e-27	Malectin-like domain
Pkinase	PF00069	484 - 750	4.9e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	486 - 751	2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1906, 1993
AccB1I	GGYRCC	1 cut(s)	1559
AccI	GTMKAC	2 cut(s)	93, 1196
AccII	CGCG	2 cut(s)	1695, 1768
AclI	AACGTT	1 cut(s)	1458
AclWI	GGATC	2 cut(s)	791, 2050
AcoI	YGGCCR	3 cut(s)	169, 888, 1860
AcsI	RAATTY	5 cut(s)	176, 332, 478, 641, 2443
AdeI	CACNNNGTG	1 cut(s)	1559
AfeI	AGCGCT	1 cut(s)	1035
AfiI	CCNNNNNNNGG	7 cut(s)	124, 598, 781, 992, 1147, 2065, 2469
AflIII	ACRYGT	1 cut(s)	1485
AgeI	ACCGGT	2 cut(s)	65, 591
AhlI	ACTAGT	1 cut(s)	2426
AjiI	CACGTC	2 cut(s)	1368, 1609
AjnI	CCWGG	1 cut(s)	1181
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 1826, 1858
AleI	CACNNNNGTG	1 cut(s)	1791
AluBI	AGCT	8 cut(s)	123, 521, 676, 1099, 1211, 1302, 1396, 2090
AluI	AGCT	8 cut(s)	123, 521, 676, 1099, 1211, 1302, 1396, 2090
Alw21I	GWGCWC	3 cut(s)	678, 1257, 1832
Alw26I	GTCTC	7 cut(s)	344, 355, 814, 954, 1626, 2279, 2382
AlwI	GGATC	2 cut(s)	791, 2050
Ama87I	CYCGRG	2 cut(s)	365, 1108
Aor51HI	AGCGCT	1 cut(s)	1035
AoxI	GGCC	6 cut(s)	169, 556, 888, 1287, 1860, 2045
ApeKI	GCWGC	2 cut(s)	1208, 2090
ApoI	RAATTY	5 cut(s)	176, 332, 478, 641, 2443
AsiGI	ACCGGT	2 cut(s)	65, 591
AspLEI	GCGC	3 cut(s)	1036, 1768, 2260
AspS9I	GGNCC	4 cut(s)	557, 1127, 1322, 1686
AsuC2I	CCSGG	4 cut(s)	168, 1148, 1234, 1961
AsuHPI	GGTGA	8 cut(s)	55, 286, 364, 1162, 1661, 1805, 2342, 2428
AvaI	CYCGRG	2 cut(s)	365, 1108
AvaII	GGWCC	3 cut(s)	1127, 1322, 1686
BaeGI	GKGCMC	2 cut(s)	1564, 1898
BalI	TGGCCA	2 cut(s)	890, 1862
BanI	GGYRCC	1 cut(s)	1559
BanII	GRGCYC	2 cut(s)	678, 1181
BauI	CACGAG	1 cut(s)	1616
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	3 cut(s)	678, 1257, 1832
BbvI	GCAGC	2 cut(s)	1220, 2077
BccI	CCATC	6 cut(s)	523, 569, 764, 921, 1079, 1620
BceAI	ACGGC	2 cut(s)	1372, 1550
BciT130I	CCWGG	1 cut(s)	1183
BclI	TGATCA	1 cut(s)	1806
BcnI	CCSGG	4 cut(s)	168, 1148, 1234, 1961
BcoDI	GTCTC	7 cut(s)	344, 355, 814, 954, 1626, 2279, 2382
BcuI	ACTAGT	1 cut(s)	2426
BfaI	CTAG	7 cut(s)	1022, 1085, 2043, 2087, 2427, 2448, 2454
BfmI	CTRYAG	1 cut(s)	1297
BfoI	RGCGCY	2 cut(s)	1037, 2261
BglII	AGATCT	2 cut(s)	765, 2496
BisI	GCNGC	5 cut(s)	74, 1209, 1431, 1764, 2091
BlpI	GCTNAGC	1 cut(s)	1100
BlsI	GCNGC	5 cut(s)	75, 1210, 1432, 1765, 2092
BmcAI	AGTACT	2 cut(s)	1026, 1967
Bme1390I	CCNGG	5 cut(s)	168, 1148, 1183, 1234, 1961
Bme18I	GGWCC	3 cut(s)	1127, 1322, 1686
BmeT110I	CYCGRG	2 cut(s)	365, 1108
BmgBI	CACGTC	2 cut(s)	1368, 1609
BmgT120I	GGNCC	4 cut(s)	557, 1127, 1322, 1686
BmiI	GGNNCC	7 cut(s)	559, 1129, 1323, 1561, 1687, 1688, 2401
BmrFI	CCNGG	5 cut(s)	168, 1148, 1183, 1234, 1961
BmsI	GCATC	3 cut(s)	382, 1057, 2353
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	2 cut(s)	545, 1022
Bpu1102I	GCTNAGC	1 cut(s)	1100
BpuEI	CTTGAG	3 cut(s)	1288, 1586, 2282
BpuMI	CCSGG	4 cut(s)	168, 1148, 1234, 1961
Bsa29I	ATCGAT	1 cut(s)	868
BsaI	GGTCTC	1 cut(s)	2279
BsaJI	CCNNGG	7 cut(s)	466, 1146, 1181, 1290, 1730, 1863, 1929
BsaWI	WCCGGW	6 cut(s)	65, 88, 214, 581, 591, 988
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	7 cut(s)	124, 598, 781, 992, 1147, 2065, 2469
Bse118I	RCCGGY	4 cut(s)	65, 257, 591, 2047
Bse1I	ACTGG	3 cut(s)	438, 950, 1795
Bse3DI	GCAATG	1 cut(s)	1215
BseBI	CCWGG	1 cut(s)	1183
BseCI	ATCGAT	1 cut(s)	868
BseDI	CCNNGG	7 cut(s)	466, 1146, 1181, 1290, 1730, 1863, 1929
BseGI	GGATG	6 cut(s)	45, 180, 561, 750, 932, 1852
BseLI	CCNNNNNNNGG	7 cut(s)	124, 598, 781, 992, 1147, 2065, 2469
BseMI	GCAATG	1 cut(s)	1215
BseMII	CTCAG	4 cut(s)	1044, 1114, 1980, 2484
BseNI	ACTGG	3 cut(s)	438, 950, 1795
BseRI	GAGGAG	2 cut(s)	9, 260
BseSI	GKGCMC	2 cut(s)	1564, 1898
BseXI	GCAGC	2 cut(s)	1220, 2077
Bsh1236I	CGCG	2 cut(s)	1695, 1768
Bsh1285I	CGRYCG	3 cut(s)	93, 872, 2234
BshFI	GGCC	6 cut(s)	171, 558, 890, 1289, 1862, 2047
BshNI	GGYRCC	1 cut(s)	1559
BshTI	ACCGGT	2 cut(s)	65, 591
BshVI	ATCGAT	1 cut(s)	868
BsiEI	CGRYCG	3 cut(s)	93, 872, 2234
BsiHKAI	GWGCWC	3 cut(s)	678, 1257, 1832
BsiHKCI	CYCGRG	2 cut(s)	365, 1108
BsiWI	CGTACG	1 cut(s)	396
BslFI	GGGAC	4 cut(s)	93, 301, 614, 1699
BslI	CCNNNNNNNGG	7 cut(s)	124, 598, 781, 992, 1147, 2065, 2469
BsmAI	GTCTC	7 cut(s)	344, 355, 814, 954, 1626, 2279, 2382
BsmFI	GGGAC	4 cut(s)	93, 301, 614, 1699
BsnI	GGCC	6 cut(s)	171, 558, 890, 1289, 1862, 2047
Bso31I	GGTCTC	1 cut(s)	2279
BsoBI	CYCGRG	2 cut(s)	365, 1108
Bsp1286I	GDGCHC	6 cut(s)	678, 1181, 1257, 1564, 1832, 1898
Bsp1407I	TGTACA	2 cut(s)	1488, 1704
Bsp1720I	GCTNAGC	1 cut(s)	1100
Bsp19I	CCATGG	1 cut(s)	1929
BspANI	GGCC	6 cut(s)	171, 558, 890, 1289, 1862, 2047
BspCNI	CTCAG	4 cut(s)	1043, 1113, 1981, 2485
BspDI	ATCGAT	1 cut(s)	868
BspFNI	CGCG	2 cut(s)	1695, 1768
BspLI	GGNNCC	7 cut(s)	559, 1129, 1323, 1561, 1687, 1688, 2401
BspPI	GGATC	2 cut(s)	791, 2050
BspQI	GCTCTTC	2 cut(s)	1169, 1820
BspT107I	GGYRCC	1 cut(s)	1559
BspTNI	GGTCTC	1 cut(s)	2279
BsrDI	GCAATG	1 cut(s)	1215
BsrFI	RCCGGY	4 cut(s)	65, 257, 591, 2047
BsrGI	TGTACA	2 cut(s)	1488, 1704
BsrI	ACTGG	3 cut(s)	438, 950, 1795
BssAI	RCCGGY	4 cut(s)	65, 257, 591, 2047
BssECI	CCNNGG	7 cut(s)	466, 1146, 1181, 1290, 1730, 1863, 1929
BssSI	CACGAG	1 cut(s)	1616
BssT1I	CCWWGG	5 cut(s)	466, 1290, 1730, 1863, 1929
Bst2BI	CACGAG	1 cut(s)	1616
Bst2UI	CCWGG	1 cut(s)	1183
Bst4CI	ACNGT	6 cut(s)	1376, 1508, 1649, 1983, 2235, 2290
Bst6I	CTCTTC	5 cut(s)	62, 245, 1169, 1731, 1820
BstAUI	TGTACA	2 cut(s)	1488, 1704
BstC8I	GCNNGC	5 cut(s)	259, 457, 650, 1222, 2049
BstDEI	CTNAG	6 cut(s)	793, 1030, 1100, 1911, 1989, 2493
BstDSI	CCRYGG	1 cut(s)	1929
BstEII	GGTNACC	1 cut(s)	2416
BstF5I	GGATG	6 cut(s)	45, 180, 561, 750, 932, 1852
BstFNI	CGCG	2 cut(s)	1695, 1768
BstH2I	RGCGCY	2 cut(s)	1037, 2261
BstHHI	GCGC	3 cut(s)	1036, 1768, 2260
BstMAI	GTCTC	7 cut(s)	344, 355, 814, 954, 1626, 2279, 2382
BstMCI	CGRYCG	3 cut(s)	93, 872, 2234
BstMWI	GCNNNNNNNGC	7 cut(s)	713, 1217, 1252, 1393, 1774, 1868, 2048
BstNI	CCWGG	1 cut(s)	1183
BstPI	GGTNACC	1 cut(s)	2416
BstSCI	CCNGG	5 cut(s)	166, 1146, 1181, 1232, 1959
BstSFI	CTRYAG	1 cut(s)	1297
BstSLI	GKGCMC	2 cut(s)	1564, 1898
BstUI	CGCG	2 cut(s)	1695, 1768
BstV1I	GCAGC	2 cut(s)	1220, 2077
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	3 cut(s)	765, 796, 2496
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	3 cut(s)	765, 796, 2496
Bsu15I	ATCGAT	1 cut(s)	868
BsuRI	GGCC	6 cut(s)	171, 558, 890, 1289, 1862, 2047
BsuTUI	ATCGAT	1 cut(s)	868
BtgI	CCRYGG	1 cut(s)	1929
BtrI	CACGTC	2 cut(s)	1368, 1609
BtsCI	GGATG	6 cut(s)	45, 180, 561, 750, 932, 1852
BtsIMutI	CAGTG	2 cut(s)	1257, 1788
Cac8I	GCNNGC	5 cut(s)	259, 457, 650, 1222, 2049
CfoI	GCGC	3 cut(s)	1036, 1768, 2260
Cfr10I	RCCGGY	4 cut(s)	65, 257, 591, 2047
Cfr13I	GGNCC	4 cut(s)	557, 1127, 1322, 1686
ClaI	ATCGAT	1 cut(s)	868
CseI	GACGC	3 cut(s)	311, 1500, 1592
CspAI	ACCGGT	2 cut(s)	65, 591
CspCI	CAANNNNNGTGG	6 cut(s)	1093, 1128, 1298, 1333, 1504, 1539
DdeI	CTNAG	6 cut(s)	793, 1030, 1100, 1911, 1989, 2493
DraIII	CACNNNGTG	1 cut(s)	1559
DrdI	GACNNNNNNGTC	2 cut(s)	1906, 1993
DseDI	GACNNNNNNGTC	2 cut(s)	1906, 1993
EaeI	YGGCCR	3 cut(s)	169, 888, 1860
Eam1104I	CTCTTC	5 cut(s)	62, 245, 1169, 1731, 1820
EarI	CTCTTC	5 cut(s)	62, 245, 1169, 1731, 1820
EciI	GGCGGA	2 cut(s)	567, 1433
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	5 cut(s)	466, 1290, 1730, 1863, 1929
Eco24I	GRGCYC	2 cut(s)	678, 1181
Eco31I	GGTCTC	1 cut(s)	2279
Eco47I	GGWCC	3 cut(s)	1127, 1322, 1686
Eco47III	AGCGCT	1 cut(s)	1035
Eco53kI	GAGCTC	1 cut(s)	676
Eco88I	CYCGRG	2 cut(s)	365, 1108
Eco91I	GGTNACC	1 cut(s)	2416
EcoICRI	GAGCTC	1 cut(s)	676
EcoO109I	RGGNCCY	2 cut(s)	557, 1686
EcoO65I	GGTNACC	1 cut(s)	2416
EcoRI	GAATTC	2 cut(s)	332, 641
EcoRII	CCWGG	1 cut(s)	1181
EcoT14I	CCWWGG	5 cut(s)	466, 1290, 1730, 1863, 1929
EcoT22I	ATGCAT	1 cut(s)	2214
EcoT38I	GRGCYC	2 cut(s)	678, 1181
ErhI	CCWWGG	5 cut(s)	466, 1290, 1730, 1863, 1929
FaqI	GGGAC	4 cut(s)	93, 301, 614, 1699
FauI	CCCGC	3 cut(s)	327, 573, 1466
FbaI	TGATCA	1 cut(s)	1806
FblI	GTMKAC	2 cut(s)	93, 1196
Fnu4HI	GCNGC	5 cut(s)	74, 1209, 1431, 1764, 2091
FokI	GGATG	6 cut(s)	32, 167, 548, 757, 939, 1859
FriOI	GRGCYC	2 cut(s)	678, 1181
Fsp4HI	GCNGC	5 cut(s)	74, 1209, 1431, 1764, 2091
FspBI	CTAG	7 cut(s)	1022, 1085, 2043, 2087, 2427, 2448, 2454
GlaI	GCGC	3 cut(s)	1035, 1767, 2259
GluI	GCNGC	5 cut(s)	74, 1209, 1431, 1764, 2091
GsuI	CTGGAG	2 cut(s)	545, 1022
HaeII	RGCGCY	2 cut(s)	1037, 2261
HaeIII	GGCC	6 cut(s)	171, 558, 890, 1289, 1862, 2047
HgaI	GACGC	3 cut(s)	311, 1500, 1592
HhaI	GCGC	3 cut(s)	1036, 1768, 2260
Hin6I	GCGC	3 cut(s)	1034, 1766, 2258
HinP1I	GCGC	3 cut(s)	1034, 1766, 2258
HincII	GTYRAC	4 cut(s)	94, 1012, 1979, 1986
HindII	GTYRAC	4 cut(s)	94, 1012, 1979, 1986
HpaI	GTTAAC	1 cut(s)	1012
HphI	GGTGA	8 cut(s)	55, 286, 364, 1162, 1661, 1805, 2342, 2428
Hpy99I	CGWCG	4 cut(s)	305, 551, 614, 1977
HpyAV	CCTTC	3 cut(s)	385, 1793, 2320
HpyCH4III	ACNGT	6 cut(s)	1376, 1508, 1649, 1983, 2235, 2290
HpyCH4IV	ACGT	6 cut(s)	546, 966, 1367, 1458, 1485, 1608
HpyCH4V	TGCA	8 cut(s)	914, 1220, 1777, 2093, 2198, 2212, 2270, 2366
HpyF10VI	GCNNNNNNNGC	7 cut(s)	713, 1217, 1252, 1393, 1774, 1868, 2048
HpyF3I	CTNAG	6 cut(s)	793, 1030, 1100, 1911, 1989, 2493
HpySE526I	ACGT	6 cut(s)	546, 966, 1367, 1458, 1485, 1608
HspAI	GCGC	3 cut(s)	1034, 1766, 2258
KflI	GGGWCCC	1 cut(s)	1686
KroI	GCCGGC	2 cut(s)	257, 2047
KroNI	GCCGGC	2 cut(s)	259, 2049
Ksp22I	TGATCA	1 cut(s)	1806
KspAI	GTTAAC	1 cut(s)	1012
LguI	GCTCTTC	2 cut(s)	1169, 1820
LmnI	GCTCC	3 cut(s)	141, 935, 1041
Lsp1109I	GCAGC	2 cut(s)	1220, 2077
LweI	GCATC	3 cut(s)	382, 1057, 2353
MaeI	CTAG	7 cut(s)	1022, 1085, 2043, 2087, 2427, 2448, 2454
MaeII	ACGT	6 cut(s)	546, 966, 1367, 1458, 1485, 1608
MflI	RGATCY	3 cut(s)	765, 796, 2496
MhlI	GDGCHC	6 cut(s)	678, 1181, 1257, 1564, 1832, 1898
MlsI	TGGCCA	2 cut(s)	890, 1862
MluNI	TGGCCA	2 cut(s)	890, 1862
MlyI	GAGTC	7 cut(s)	323, 357, 596, 816, 1126, 1556, 2384
MmeI	TCCRAC	3 cut(s)	247, 973, 1824
Mox20I	TGGCCA	2 cut(s)	890, 1862
Mph1103I	ATGCAT	1 cut(s)	2214
MroNI	GCCGGC	2 cut(s)	257, 2047
MscI	TGGCCA	2 cut(s)	890, 1862
MseI	TTAA	5 cut(s)	807, 1011, 2100, 2273, 2466
MslI	CAYNNNNRTG	5 cut(s)	584, 831, 1791, 1818, 2217
Msp20I	TGGCCA	2 cut(s)	890, 1862
MspA1I	CMGCKG	2 cut(s)	322, 568
MspR9I	CCNGG	5 cut(s)	168, 1148, 1183, 1234, 1961
MvaI	CCWGG	1 cut(s)	1183
MvnI	CGCG	2 cut(s)	1695, 1768
MwoI	GCNNNNNNNGC	7 cut(s)	713, 1217, 1252, 1393, 1774, 1868, 2048
NaeI	GCCGGC	2 cut(s)	259, 2049
NciI	CCSGG	4 cut(s)	168, 1148, 1234, 1961
NcoI	CCATGG	1 cut(s)	1929
NgoMIV	GCCGGC	2 cut(s)	257, 2047
NlaIV	GGNNCC	7 cut(s)	559, 1129, 1323, 1561, 1687, 1688, 2401
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	8 cut(s)	61, 247, 292, 1551, 1604, 1637, 2108, 2416
NsiI	ATGCAT	1 cut(s)	2214
OliI	CACNNNNGTG	1 cut(s)	1791
PaeR7I	CTCGAG	2 cut(s)	365, 1108
PciSI	GCTCTTC	2 cut(s)	1169, 1820
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 1614, 1953
PdiI	GCCGGC	2 cut(s)	259, 2049
PfeI	GAWTC	7 cut(s)	414, 472, 540, 842, 946, 1451, 2459
Pfl23II	CGTACG	1 cut(s)	396
PinAI	ACCGGT	2 cut(s)	65, 591
PkrI	GCNGC	5 cut(s)	75, 1210, 1432, 1765, 2092
Ple19I	CGATCG	1 cut(s)	872
PleI	GAGTC	7 cut(s)	322, 357, 596, 816, 1125, 1555, 2384
PpsI	GAGTC	7 cut(s)	322, 357, 596, 816, 1125, 1555, 2384
PpuMI	RGGWCCY	1 cut(s)	1686
Psp124BI	GAGCTC	1 cut(s)	678
Psp1406I	AACGTT	1 cut(s)	1458
Psp5II	RGGWCCY	1 cut(s)	1686
Psp6I	CCWGG	1 cut(s)	1181
PspEI	GGTNACC	1 cut(s)	2416
PspGI	CCWGG	1 cut(s)	1181
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	7 cut(s)	559, 1129, 1323, 1561, 1687, 1688, 2401
PspPI	GGNCC	4 cut(s)	557, 1127, 1322, 1686
PspPPI	RGGWCCY	1 cut(s)	1686
PspXI	VCTCGAGB	1 cut(s)	1108
PsuI	RGATCY	3 cut(s)	765, 796, 2496
PvuI	CGATCG	1 cut(s)	872
RseI	CAYNNNNRTG	5 cut(s)	584, 831, 1791, 1818, 2217
SacI	GAGCTC	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	2 cut(s)	1169, 1820
SaqAI	TTAA	5 cut(s)	807, 1011, 2100, 2273, 2466
SatI	GCNGC	5 cut(s)	74, 1209, 1431, 1764, 2091
Sau96I	GGNCC	4 cut(s)	557, 1127, 1322, 1686
ScaI	AGTACT	2 cut(s)	1026, 1967
SchI	GAGTC	7 cut(s)	323, 357, 596, 816, 1126, 1556, 2384
ScrFI	CCNGG	5 cut(s)	168, 1148, 1183, 1234, 1961
SduI	GDGCHC	6 cut(s)	678, 1181, 1257, 1564, 1832, 1898
SfaNI	GCATC	3 cut(s)	382, 1057, 2353
SfcI	CTRYAG	1 cut(s)	1297
Sfr274I	CTCGAG	2 cut(s)	365, 1108
SinI	GGWCC	3 cut(s)	1127, 1322, 1686
SlaI	CTCGAG	2 cut(s)	365, 1108
SmiMI	CAYNNNNRTG	5 cut(s)	584, 831, 1791, 1818, 2217
SmlI	CTYRAG	5 cut(s)	365, 1108, 1303, 1565, 2261
SmoI	CTYRAG	5 cut(s)	365, 1108, 1303, 1565, 2261
SpeI	ACTAGT	1 cut(s)	2426
SspMI	CTAG	7 cut(s)	1022, 1085, 2043, 2087, 2427, 2448, 2454
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	5 cut(s)	166, 1146, 1181, 1232, 1959
StyI	CCWWGG	5 cut(s)	466, 1290, 1730, 1863, 1929
TaaI	ACNGT	6 cut(s)	1376, 1508, 1649, 1983, 2235, 2290
TaiI	ACGT	6 cut(s)	549, 969, 1370, 1461, 1488, 1611
TaqII	GACCGA	1 cut(s)	723
TatI	WGTACW	5 cut(s)	1024, 1488, 1704, 1965, 2004
TauI	GCSGC	3 cut(s)	76, 1433, 1766
TfiI	GAWTC	7 cut(s)	414, 472, 540, 842, 946, 1451, 2459
Tru1I	TTAA	5 cut(s)	807, 1011, 2100, 2273, 2466
Tru9I	TTAA	5 cut(s)	807, 1011, 2100, 2273, 2466
TscAI	CASTG	2 cut(s)	1257, 1795
TseFI	GTSAC	8 cut(s)	61, 247, 292, 1551, 1604, 1637, 2108, 2416
TseI	GCWGC	2 cut(s)	1208, 2090
Tsp45I	GTSAC	8 cut(s)	61, 247, 292, 1551, 1604, 1637, 2108, 2416
TspGWI	ACGGA	9 cut(s)	235, 280, 426, 876, 1592, 2048, 2081, 2127, 2133
TspRI	CASTG	2 cut(s)	1257, 1795
VpaK11BI	GGWCC	3 cut(s)	1127, 1322, 1686
XapI	RAATTY	5 cut(s)	176, 332, 478, 641, 2443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1728
XhoI	CTCGAG	2 cut(s)	365, 1108
XmiI	GTMKAC	2 cut(s)	93, 1196
XspI	CTAG	7 cut(s)	1022, 1085, 2043, 2087, 2427, 2448, 2454
ZrmI	AGTACT	2 cut(s)	1026, 1967
Zsp2I	ATGCAT	1 cut(s)	2214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.