Rorug01G0034500

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000105
Physical Location & Seq
Forward (+)
5892518 .. 5897868
5351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0034500.1

Sequence Viewer

Length: 939 bp
ATGGAGGACAGGAACACTATTTTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGGCAGGTATGCTCCCAAGTGAAGTAGCGTATATATCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGGAAGGAAATATTTCAACCTCATGATAACAGAACACAATGTGTCCCCAAATGTTGTTCACTATGCATGCATGGTTGATATTTTTGGTCGGTCAGGGTTGATTCTTGAAGCCCATAATTTGATTGAGAATATGCCATTTGATGCTACTGCTTCTATGTGGGGTTCACTGTTAGCTTCTTGTAGGATCCATGGAAATTTTCATTTAGCTGAGATAGCAGCTAAGCATTTGTCTGAGATAGAACCGAACAATGCAGGGAACCTCATTTTGTTGTCAAATATTTATGCAGCAAATAATAAGTGGGAGGAGGTTGCAAGAACAAGGAAGCTTCTTAAAGAAAGTGAGTTGAAGAAGGAAAGAGGGAAGAGTTGGATTGAAATCAAGGACAAAGTTCACTCATTTATGGTCGGAGAGAGAAAACATCCCAGAATTGCTGAGATATACTCTAAGTTAGACCAATTGGTGGAAGAATTAAGGATGATGGGTTACAAGGCTGAGATTGAACATGATCTTCATTATGTCGAAGAGAGCAGAAAACATGAACTTCTGAGGCACCATAGTGAAAAACTTGCTCTTACTTTTGGGTTGATGTGTTTACCCTCCAATGCACCTATCAGGATCATGAAGAATCTTAGAATTTGTGGGGATTGTCATTCTTTTATGAAGATCGCATCAAGTTGTTTGGGGAGGGAAATCATTGTCAGGGATACTAAAAGGTTTCACCATTTCAAAAATGGTTTTTGCTCTTGTCGGGAATTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

312

Amino Acids

35.89

Weight (kDa)

8.03

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 5 - 52 4.5e-07 PPR repeat family
E_motif PF20431 122 - 184 5.8e-20 E motif
DYW_deaminase PF14432 220 - 312 1.1e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 726
AccB7I CCANNNNNTGG 1 cut(s) 637
AclWI GGATC 3 cut(s) 355, 368, 800
AcsI RAATTY 3 cut(s) 370, 810, 929
AdeI CACNNNGTG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 7 cut(s) 173, 193, 284, 523, 551, 677, 904
AleI CACNNNNGTG 1 cut(s) 732
AluBI AGCT 4 cut(s) 350, 383, 395, 502
AluI AGCT 4 cut(s) 350, 383, 395, 502
AlwI GGATC 3 cut(s) 355, 368, 800
ApeKI GCWGC 3 cut(s) 97, 392, 461
ApoI RAATTY 3 cut(s) 370, 810, 929
Asp700I GAANNNNTTC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 85, 887
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 726
BbvI GCAGC 3 cut(s) 109, 404, 473
BccI CCATC 1 cut(s) 649
BciVI GTATCC 1 cut(s) 874
BfaI CTAG 2 cut(s) 51, 68
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 874
BisI GCNGC 3 cut(s) 98, 393, 462
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 3 cut(s) 99, 394, 463
BmiI GGNNCC 3 cut(s) 362, 434, 728
BmsI GCATC 2 cut(s) 307, 854
BplI GAGNNNNNCTC 2 cut(s) 602, 634
Bpu1102I GCTNAGC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 551
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 595, 657
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMII CTCAG 5 cut(s) 375, 399, 600, 660, 713
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 3 cut(s) 109, 404, 473
BshNI GGYRCC 1 cut(s) 726
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 637
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 34
Bsp143I GATC 5 cut(s) 78, 360, 682, 792, 840
Bsp1720I GCTNAGC 1 cut(s) 396
Bsp19I CCATGG 1 cut(s) 364
BspCNI CTCAG 5 cut(s) 376, 400, 601, 661, 714
BspHI TCATGA 2 cut(s) 198, 795
BspLI GGNNCC 3 cut(s) 362, 434, 728
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 355, 368, 800
BspT107I GGYRCC 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 5 cut(s) 78, 360, 682, 792, 840
BssT1I CCWWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 533, 693
BstC8I GCNNGC 3 cut(s) 61, 102, 244
BstDEI CTNAG 8 cut(s) 384, 396, 408, 609, 621, 669, 722, 806
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 595, 657
BstKTI GATC 5 cut(s) 81, 363, 685, 795, 843
BstMBI GATC 5 cut(s) 78, 360, 682, 792, 840
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNSI RCATGY 2 cut(s) 59, 246
BstV1I GCAGC 3 cut(s) 109, 404, 473
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 874
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 2 cut(s) 595, 657
BtsIMutI CAGTG 1 cut(s) 341
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 3 cut(s) 61, 102, 244
CciI TCATGA 2 cut(s) 198, 795
CviAII CATG 9 cut(s) 34, 56, 199, 243, 247, 365, 680, 713, 796
CviJI RGCY 6 cut(s) 287, 350, 383, 395, 502, 668
CviKI_1 RGCY 6 cut(s) 287, 350, 383, 395, 502, 668
DdeI CTNAG 8 cut(s) 384, 396, 408, 609, 621, 669, 722, 806
DpnI GATC 5 cut(s) 80, 362, 684, 794, 842
DpnII GATC 5 cut(s) 78, 360, 682, 792, 840
DraIII CACNNNGTG 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 533, 693
EarI CTCTTC 2 cut(s) 533, 693
Eco130I CCWWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 364
EcoT22I ATGCAT 2 cut(s) 244, 248
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 9 cut(s) 37, 59, 202, 246, 250, 368, 683, 716, 799
FaqI GGGAC 1 cut(s) 205
FatI CATG 9 cut(s) 33, 55, 198, 242, 246, 364, 679, 712, 795
FauNDI CATATG 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 98, 393, 462
FokI GGATG 2 cut(s) 582, 664
Fsp4HI GCNGC 3 cut(s) 98, 393, 462
FspBI CTAG 2 cut(s) 51, 68
GluI GCNGC 3 cut(s) 98, 393, 462
Hin1II CATG 9 cut(s) 37, 59, 202, 246, 250, 368, 683, 716, 799
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 2 cut(s) 277, 802
HphI GGTGA 2 cut(s) 85, 887
Hpy166II GTNNAC 4 cut(s) 235, 341, 568, 770
Hpy188I TCNGA 3 cut(s) 409, 584, 723
Hpy188III TCNNGA 6 cut(s) 51, 199, 281, 790, 796, 926
Hpy8I GTNNAC 4 cut(s) 235, 341, 568, 770
HpyAV CCTTC 2 cut(s) 174, 520
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 7 cut(s) 97, 242, 246, 428, 461, 488, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 8 cut(s) 384, 396, 408, 609, 621, 669, 722, 806
Hsp92II CATG 9 cut(s) 37, 59, 202, 246, 250, 368, 683, 716, 799
Kzo9I GATC 5 cut(s) 78, 360, 682, 792, 840
LmnI GCTCC 2 cut(s) 68, 117
LpnPI CCDG 8 cut(s) 27, 86, 90, 255, 414, 613, 775, 862
Lsp1109I GCAGC 3 cut(s) 109, 404, 473
LweI GCATC 2 cut(s) 307, 854
MaeI CTAG 2 cut(s) 51, 68
MaeIII GTNAC 1 cut(s) 659
MalI GATC 5 cut(s) 80, 362, 684, 794, 842
MboI GATC 5 cut(s) 78, 360, 682, 792, 840
MboII GAAGA 7 cut(s) 535, 550, 653, 677, 710, 811, 850
MfeI CAATTG 1 cut(s) 632
MflI RGATCY 1 cut(s) 360
MluCI AATT 7 cut(s) 292, 370, 603, 632, 644, 810, 929
MmeI TCCRAC 2 cut(s) 524, 562
MnlI CCTC 9 cut(s) 64, 206, 446, 472, 475, 527, 717, 784, 855
Mph1103I ATGCAT 2 cut(s) 244, 248
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 3 cut(s) 143, 507, 647
MslI CAYNNNNRTG 1 cut(s) 732
MunI CAATTG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 389
NcoI CCATGG 1 cut(s) 364
NdeI CATATG 1 cut(s) 159
NdeII GATC 5 cut(s) 78, 360, 682, 792, 840
NlaIII CATG 9 cut(s) 37, 59, 202, 246, 250, 368, 683, 716, 799
NlaIV GGNNCC 3 cut(s) 362, 434, 728
NsiI ATGCAT 2 cut(s) 244, 248
NspI RCATGY 2 cut(s) 59, 246
OliI CACNNNNGTG 1 cut(s) 732
PaeI GCATGC 1 cut(s) 246
PagI TCATGA 2 cut(s) 198, 795
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 277, 802
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 3 cut(s) 99, 394, 463
PspN4I GGNNCC 3 cut(s) 362, 434, 728
PsuI RGATCY 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 3 cut(s) 143, 507, 647
SatI GCNGC 3 cut(s) 98, 393, 462
Sau3AI GATC 5 cut(s) 78, 360, 682, 792, 840
SfaNI GCATC 2 cut(s) 307, 854
SmiMI CAYNNNNRTG 1 cut(s) 732
SphI GCATGC 1 cut(s) 246
Sse9I AATT 7 cut(s) 292, 370, 603, 632, 644, 810, 929
SspI AATATT 2 cut(s) 188, 454
SspMI CTAG 2 cut(s) 51, 68
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 696
TaqII GACCGA 1 cut(s) 255
TasI AATT 7 cut(s) 292, 370, 603, 632, 644, 810, 929
TfiI GAWTC 2 cut(s) 277, 802
Tru1I TTAA 3 cut(s) 143, 507, 647
Tru9I TTAA 3 cut(s) 143, 507, 647
TscAI CASTG 1 cut(s) 348
TseI GCWGC 3 cut(s) 97, 392, 461
TspDTI ATGAA 5 cut(s) 365, 677, 729, 812, 851
TspRI CASTG 1 cut(s) 348
Van91I CCANNNNNTGG 1 cut(s) 637
XapI RAATTY 3 cut(s) 370, 810, 929
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 2 cut(s) 59, 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 905
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 2 cut(s) 51, 68
Zsp2I ATGCAT 2 cut(s) 244, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.