RchiOBHm_Chr6g0247291

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000105
Physical Location & Seq
Forward (+)
3165395 .. 3165866
472 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22167

Sequence Viewer

Length: 390 bp
ATGCTGAAGACATTCATGTATCAGGGAATCTCTGATAAGAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTCCTGAGTGGTTCAGCCATCTAACTGTTGGGTGTTCATTAAGTGCGGAGCTGCCTCCAGATTGGGATAGCAGTAGGTTTATGGGATTTGCTGTGTGTGTTGTTTTTGTACTCCATGAGCACCATCAGGTTGATGAGCTTGATATTCATCAATTCAAGAATTTTAACGCTACTCATCATCTTGTATGTTGCCTGAAGCTCAATGGAAGAGAATTAGAAGTATACGGCAGACAGCCTGCATTTCGCTTTAGTGAAGAGTTTTGCCAGCTGAACTCAGATCACCTGTGGCTATTCTATGTATCTCGTGATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

129

Amino Acids

15.14

Weight (kDa)

5.85

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 21 - 85 6.5e-14 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 26, 290
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 53, 232
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 4 cut(s) 127, 214, 274, 343
AluI AGCT 4 cut(s) 127, 214, 274, 343
Alw21I GWGCWC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 2 cut(s) 11, 48
AsuHPI GGTGA 1 cut(s) 347
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 102, 207
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 66
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 222
BseMII CTCAG 2 cut(s) 72, 363
BseXI GCAGC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 73, 362
BssMI GATC 1 cut(s) 352
BssNAI GTATAC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 2 cut(s) 277, 324
BstC8I GCNNGC 2 cut(s) 312, 341
BstDEI CTNAG 2 cut(s) 81, 349
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 14
BstZ17I GTATAC 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 312, 341
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 16, 191
CviJI RGCY 7 cut(s) 93, 127, 214, 274, 310, 343, 364
CviKI_1 RGCY 7 cut(s) 93, 127, 214, 274, 310, 343, 364
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 81, 349
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 277, 324
EarI CTCTTC 2 cut(s) 277, 324
Eco57I CTGAAG 2 cut(s) 26, 290
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 19, 194
FaiI YATR 6 cut(s) 17, 158, 192, 262, 298, 372
FatI CATG 2 cut(s) 15, 190
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 117
Hin1II CATG 2 cut(s) 19, 194
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 34, 352
Hpy188III TCNNGA 4 cut(s) 80, 134, 232, 380
Hpy8I GTNNAC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 81, 349
Hsp92II CATG 2 cut(s) 19, 194
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 114
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 3 cut(s) 19, 294, 341
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 54, 60, 227, 235, 287
MnlI CCTC 2 cut(s) 33, 141
MroXI GAANNNNTTC 2 cut(s) 11, 48
MseI TTAA 2 cut(s) 116, 240
MspA1I CMGCKG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NdeII GATC 1 cut(s) 352
NlaIII CATG 2 cut(s) 19, 194
PdmI GAANNNNTTC 2 cut(s) 11, 48
PfeI GAWTC 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 116, 240
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 129, 155, 207, 216, 276, 345, 360
Sse9I AATT 5 cut(s) 54, 60, 227, 235, 287
SsiI CCGC 1 cut(s) 122
SspI AATATT 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 103
TasI AATT 5 cut(s) 54, 60, 227, 235, 287
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 116, 240
Tru9I TTAA 2 cut(s) 116, 240
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 4, 102, 212
XapI RAATTY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 2 cut(s) 11, 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.