Rorug01G0036000

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
6036866 .. 6039773
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0036000.1

Sequence Viewer

Length: 1131 bp
ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTAGTTCTGGTTATGGCTCTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGACGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTCGGAGTTTTCTGGCTCCAGATGTGTGAGATCAACTACCACCAACCAATTCCAGCTTTTGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCATAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAGATAGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCAGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAGTATGGAAATGATGGAATGAAAGCGGGAAGCTGTTCAAACAGAGCTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGGAAACCGATGGGCAAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGAGGGGGATCGTTTCAAGCTACAGACACTCTCAATGGAGAACTCATATCCAGGATCAACAACACCCTGCAAGCGTGGAGGTGGAGCTGTGATCCTGGACTATCTGGGAAGCAGTCCGGCAAGGATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

41.57

Weight (kDa)

5.34

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 75 - 353 4.7e-144 PI-PLC-like catalytic domain
PI-PLC_X PF26146 106 - 330 3.2e-24 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 140, 650, 788, 974
AclWI GGATC 3 cut(s) 1015, 1061, 1085
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 1 cut(s) 964
AfiI CCNNNNNNNGG 1 cut(s) 635
AjnI CCWGG 3 cut(s) 514, 1049, 1093
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 3 cut(s) 1015, 1061, 1085
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 3 cut(s) 587, 883, 944
ApoI RAATTY 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 11, 345
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 574, 895, 931
BccI CCATC 4 cut(s) 83, 304, 770, 951
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 3 cut(s) 516, 1051, 1095
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 3 cut(s) 471, 588, 1020
BisI GCNGC 4 cut(s) 588, 650, 884, 945
BlsI GCNGC 4 cut(s) 589, 651, 885, 946
Bme1390I CCNGG 3 cut(s) 516, 1051, 1095
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 3 cut(s) 516, 1051, 1095
BpiI GAAGAC 2 cut(s) 11, 345
BpmI CTGGAG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 2 cut(s) 305, 613
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 3 cut(s) 611, 739, 763
BseBI CCWGG 3 cut(s) 516, 1051, 1095
BseDI CCNNGG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 3 cut(s) 611, 739, 763
BseRI GAGGAG 2 cut(s) 1006, 1014
BseXI GCAGC 3 cut(s) 574, 895, 931
BshFI GGCC 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 306, 614, 1116
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 119, 379
Bsp143I GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
BspACI CCGC 4 cut(s) 140, 650, 788, 974
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 3 cut(s) 1015, 1061, 1085
BsrI ACTGG 3 cut(s) 611, 739, 763
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 516, 1051, 1095
Bst4CI ACNGT 3 cut(s) 96, 152, 346
BstC8I GCNNGC 5 cut(s) 82, 101, 468, 923, 1071
BstDEI CTNAG 3 cut(s) 106, 672, 906
BstKTI GATC 6 cut(s) 112, 197, 1010, 1056, 1093, 1126
BstMBI GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
BstNI CCWGG 3 cut(s) 516, 1051, 1095
BstNSI RCATGY 2 cut(s) 628, 925
BstSCI CCNGG 3 cut(s) 514, 1049, 1093
BstSFI CTRYAG 3 cut(s) 471, 588, 1020
BstV1I GCAGC 3 cut(s) 574, 895, 931
BstV2I GAAGAC 2 cut(s) 11, 345
BstX2I RGATCY 1 cut(s) 1123
BstYI RGATCY 1 cut(s) 1123
BsuRI GGCC 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 101, 119, 342, 453, 746
Cac8I GCNNGC 5 cut(s) 82, 101, 468, 923, 1071
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 6 cut(s) 66, 446, 625, 751, 891, 922
DdeI CTNAG 3 cut(s) 106, 672, 906
DpnI GATC 6 cut(s) 111, 196, 1009, 1055, 1092, 1125
DpnII GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 379
EcoRII CCWGG 3 cut(s) 514, 1049, 1093
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 6 cut(s) 69, 449, 628, 754, 894, 925
FaqI GGGAC 1 cut(s) 296
FatI CATG 6 cut(s) 65, 445, 624, 750, 890, 921
FauI CCCGC 2 cut(s) 133, 781
Fnu4HI GCNGC 4 cut(s) 588, 650, 884, 945
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 4 cut(s) 588, 650, 884, 945
FspBI CTAG 1 cut(s) 35
GluI GCNGC 4 cut(s) 588, 650, 884, 945
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 649
HapII CCGG 3 cut(s) 306, 614, 1116
Hin1II CATG 6 cut(s) 69, 449, 628, 754, 894, 925
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 4 cut(s) 10, 309, 331, 812
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 3 cut(s) 306, 614, 1116
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 4 cut(s) 88, 169, 724, 907
Hpy188III TCNNGA 4 cut(s) 183, 328, 335, 641
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 2 cut(s) 124, 820
HpyAV CCTTC 7 cut(s) 35, 174, 281, 334, 439, 706, 719
HpyCH4III ACNGT 3 cut(s) 96, 152, 346
HpyCH4V TGCA 6 cut(s) 99, 254, 458, 590, 734, 1069
HpyF3I CTNAG 3 cut(s) 106, 672, 906
Hsp92II CATG 6 cut(s) 69, 449, 628, 754, 894, 925
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
LmnI GCTCC 4 cut(s) 89, 185, 562, 1083
Lsp1109I GCAGC 3 cut(s) 574, 895, 931
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 319, 346, 526, 667
MalI GATC 6 cut(s) 111, 196, 1009, 1055, 1092, 1125
MboI GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
MboII GAAGA 2 cut(s) 16, 350
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 2 cut(s) 119, 379
MluCI AATT 5 cut(s) 212, 229, 896, 901, 964
MlyI GAGTC 2 cut(s) 4, 318
MnlI CCTC 9 cut(s) 130, 324, 535, 831, 901, 984, 992, 995, 1071
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 5 cut(s) 360, 402, 855, 879, 927
MslI CAYNNNNRTG 1 cut(s) 739
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 3 cut(s) 306, 614, 1116
MspR9I CCNGG 3 cut(s) 516, 1051, 1095
MvaI CCWGG 3 cut(s) 516, 1051, 1095
NdeII GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
NlaIII CATG 6 cut(s) 69, 449, 628, 754, 894, 925
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 346, 526, 667
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 2 cut(s) 628, 925
PaeI GCATGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 331, 812
PflFI GACNNNGTC 1 cut(s) 344
PfoI TCCNGGA 2 cut(s) 1049, 1093
PkrI GCNGC 4 cut(s) 589, 651, 885, 946
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
Psp6I CCWGG 3 cut(s) 514, 1049, 1093
PspGI CCWGG 3 cut(s) 514, 1049, 1093
PspN4I GGNNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 1123
PsyI GACNNNGTC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 739
SaqAI TTAA 5 cut(s) 360, 402, 855, 879, 927
SatI GCNGC 4 cut(s) 588, 650, 884, 945
Sau3AI GATC 6 cut(s) 109, 194, 1007, 1053, 1090, 1123
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 3 cut(s) 516, 1051, 1095
SduI GDGCHC 2 cut(s) 119, 379
SfcI CTRYAG 3 cut(s) 471, 588, 1020
SmiMI CAYNNNNRTG 1 cut(s) 739
SphI GCATGC 1 cut(s) 925
Sse9I AATT 5 cut(s) 212, 229, 896, 901, 964
SsiI CCGC 4 cut(s) 140, 650, 788, 974
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 514, 1049, 1093
TaaI ACNGT 3 cut(s) 96, 152, 346
TaqI TCGA 2 cut(s) 119, 285
TasI AATT 5 cut(s) 212, 229, 896, 901, 964
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 2 cut(s) 331, 812
Tru1I TTAA 5 cut(s) 360, 402, 855, 879, 927
Tru9I TTAA 5 cut(s) 360, 402, 855, 879, 927
TscAI CASTG 5 cut(s) 101, 119, 349, 460, 746
TseFI GTSAC 3 cut(s) 346, 526, 667
TseI GCWGC 3 cut(s) 587, 883, 944
Tsp45I GTSAC 3 cut(s) 346, 526, 667
TspDTI ATGAA 5 cut(s) 17, 54, 501, 614, 797
TspGWI ACGGA 3 cut(s) 137, 141, 579
TspRI CASTG 5 cut(s) 101, 119, 349, 460, 746
Tth111I GACNNNGTC 1 cut(s) 344
XapI RAATTY 1 cut(s) 964
XceI RCATGY 2 cut(s) 628, 925
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.