Rh1BG047600

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000105
Physical Location & Seq
Forward (+)
6582188 .. 6587187
5000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG047600.1

Sequence Viewer

Length: 1956 bp
ATGGTAATGGAGTTGACTAAATTACAAGTGGCTGATTGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTAGTCTTCTCCATATTCGTAATGTGGACCTTCCCAAAGGCCTCACTTGTCTTTCTAATTCCTTGAGACTCCTCGAATGGACTGGGTATCCCTTCAGATATCTTCCACAAAATTTTGAAGCAGATGAACTAATTGAACTTAACTTGTGCCACAGCAACATTAAACAGCTTTGGAAGGGAACAAAGAATTTTGACAAGTTGAAGTTCATCAAACTCTGCCATTCTCAAAACATTGTGGAGACCCCAGACCTCACAGGCGTTCAGAATCTTGAGAGTTTAGATCTTGAAGGATGTGAGAATTTGGTAAGAGTCCATCAATCCCTTGGATTTCTCAAAAAGCTTATTGTCCTGAATCTTAAAGACTGCAAAAGTCTCGAGAGTCTGCCAAGTAGAATTGAAATGGAATCTCTTGAAACATTAATTCTTTCTAACTGCTCAAAAGTTAAGAAGATTCCCCAGTTTGTTGGAAATATGGAACGTTTGTCGGTGCTTTATCTTGATGAGACTGCCATTGAGAAACTGCCTGTGTCAATTGAACGGCTGAGTGGCCTTGTGTCATTGAATCTGAGCAACTGCAAAAATCTTGTCTGTCTTCCAAGCACCATCAATAAATTGAAGTCTATTAGAAATCTTAATCTTTCTGGATGCTTGAAACTTGGCAAACATCAGGTAAATGTGGGGGAGATGGACTGTTTTGAGGAAAATGATGTGAATAGTGGGTCTGCAATAGAAATGTCATCTACCCATGATCTCATAAAATATGTGAGAGGTTCAGTCTTTCGTGGATGCGAAGTAGTTTGGGGATCTGTAAATAAGTTCTTGCCTTCTGGATTGGTGCAAAAAGTGAATACAGAGCCAATGAGTTTCCGCTTGCCTATATCTGGTCTGTGTAATTTAACATATCTGAACCTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGAAACAATTTTGTTCGTCTTCCTTCTGGCATTAGATTGCTTTCTAAGCTTGAGAACTTCAACTTGGAGAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTATACTAGATTTAAAGGCAGATGGTTGTACTTCACTGAAATACCTGTTTGATGCATCAAATTTGAACGGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAATGGCAATCAAGGATGCAATAACGTAGCATTTGAAATGCTGAAGACATTCATGTATCAGGGAATCTCTAATAAGAGGGAAACTTTTCATATGGTAATTCCAGGAAGTAATATTCCTGAGTGGTTCAGCCATTGGAGTGTTGGGTGTTCATTAAGTATGAGACCTGCATGCTTAGATGAAGTTTTGGGATTTGCTTTGTGTGCTGTTTTTGTACTCCATGAGCACCATCCAGTGGATAAGCTTTATATGGATGAATTCAAGACTTTTAATGCAACACATCATCTTGTATGTTGCCTGAAGTTCAATGGAATAGAATTGGAAGTATATGGCACACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTGAATCAGATCACCTGTGGCTATTCTATGTATCTAGTGATAAGTACTTTGCTACAGAGAGGTGGCGTAACTGTTGCGGTCAGTTTGAGTTCTTATTTGAAACCAGAGGGCCGGGTCTGAAGGTGAGGGAGTGTGGAGTCCGTCTGATATATGAGGAAGATGTGCAAGCGTTGAACCAAACAACCACTCAATCAAGCAGCAGGATGTCTCCTTATGAGGATATATTGATTGGTTTTGACATTCCAGTTGCAGGGGAAACCAGTGCCACTGGTAGCAGAACTTGCACGCTTGAAGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

651

Amino Acids

73.57

Weight (kDa)

5.72

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_3 PF07725 67 - 85 1e-05 Leucine Rich Repeat
LRR_14 PF23598 98 - 191 9e-07 Leucine-rich repeat region
LRR_13 PF23286 158 - 243 7.4e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 169 - 238 1.3e-08 Leucine-rich repeat region
C-JID PF20160 461 - 607 2e-12 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1456
AccB7I CCANNNNNTGG 1 cut(s) 1516
AccI GTMKAC 1 cut(s) 1174
AciI CCGC 2 cut(s) 937, 1731
AclI AACGTT 1 cut(s) 547
AclWI GGATC 1 cut(s) 880
AcsI RAATTY 8 cut(s) 58, 181, 256, 367, 1019, 1231, 1538, 1643
AcuI CTGAAG 4 cut(s) 148, 1346, 1601, 1793
AfaI GTAC 3 cut(s) 1201, 1497, 1700
AfiI CCNNNNNNNGG 3 cut(s) 950, 1516, 1904
AjnI CCWGG 2 cut(s) 1384, 1650
AjuI GAANNNNNNNTTGG 2 cut(s) 1106, 1138
AluBI AGCT 4 cut(s) 238, 409, 1108, 1525
AluI AGCT 4 cut(s) 238, 409, 1108, 1525
Alw21I GWGCWC 1 cut(s) 1509
Alw26I GTCTC 8 cut(s) 69, 130, 302, 446, 566, 1132, 1438, 1866
AlwI GGATC 1 cut(s) 880
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 3 cut(s) 109, 616, 1763
ApeKI GCWGC 1 cut(s) 1851
ApoI RAATTY 8 cut(s) 58, 181, 256, 367, 1019, 1231, 1538, 1643
ArsI GACNNNNNNTTYG 2 cut(s) 639, 671
AseI ATTAAT 1 cut(s) 488
Asp700I GAANNNNTTC 2 cut(s) 1331, 1368
AspS9I GGNCC 2 cut(s) 97, 1763
AsuC2I CCSGG 1 cut(s) 1767
AsuHPI GGTGA 4 cut(s) 1010, 1054, 1658, 1789
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 97
BbsI GAAGAC 4 cut(s) 68, 653, 1070, 1334
Bbv12I GWGCWC 1 cut(s) 1509
BbvI GCAGC 1 cut(s) 1863
BccI CCATC 6 cut(s) 390, 680, 748, 1171, 1187, 1518
BceAI ACGGC 1 cut(s) 623
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 2 cut(s) 1386, 1652
BciVI GTATCC 1 cut(s) 168
BcnI CCSGG 1 cut(s) 1767
BcoDI GTCTC 8 cut(s) 69, 130, 302, 446, 566, 1132, 1438, 1866
BfaI CTAG 2 cut(s) 1178, 1689
BfmI CTRYAG 1 cut(s) 1707
BfuAI ACCTGC 1 cut(s) 1456
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 1852
BlsI GCNGC 1 cut(s) 1853
BmcAI AGTACT 1 cut(s) 1700
Bme1390I CCNGG 3 cut(s) 1386, 1652, 1767
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 97, 1763
BmrFI CCNGG 3 cut(s) 1386, 1652, 1767
BmrI ACTGGG 2 cut(s) 162, 520
BmsI GCATC 5 cut(s) 704, 845, 1213, 1235, 1289
BmuI ACTGGG 2 cut(s) 162, 520
BpiI GAAGAC 4 cut(s) 68, 653, 1070, 1334
BpuEI CTTGAG 3 cut(s) 154, 359, 1130
BpuMI CCSGG 1 cut(s) 1767
BsaI GGTCTC 2 cut(s) 302, 1438
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 3 cut(s) 950, 1516, 1904
Bse1I ACTGG 6 cut(s) 157, 526, 1514, 1898, 1914, 1927
BseBI CCWGG 2 cut(s) 1386, 1652
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 7 cut(s) 365, 719, 860, 1304, 1510, 1540, 1863
BseLI CCNNNNNNNGG 3 cut(s) 950, 1516, 1904
BseMII CTCAG 4 cut(s) 602, 626, 971, 1392
BseNI ACTGG 6 cut(s) 157, 526, 1514, 1898, 1914, 1927
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 1863
BshFI GGCC 3 cut(s) 111, 618, 1765
BsiHKAI GWGCWC 1 cut(s) 1509
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 1 cut(s) 1766
BslI CCNNNNNNNGG 3 cut(s) 950, 1516, 1904
BsmAI GTCTC 8 cut(s) 69, 130, 302, 446, 566, 1132, 1438, 1866
BsnI GGCC 3 cut(s) 111, 618, 1765
Bso31I GGTCTC 2 cut(s) 302, 1438
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 1509
Bsp143I GATC 4 cut(s) 349, 817, 872, 1663
BspACI CCGC 2 cut(s) 937, 1731
BspANI GGCC 3 cut(s) 111, 618, 1765
BspCNI CTCAG 4 cut(s) 603, 627, 972, 1393
BspMI ACCTGC 1 cut(s) 1456
BspPI GGATC 1 cut(s) 880
BspTNI GGTCTC 2 cut(s) 302, 1438
BsrI ACTGG 6 cut(s) 157, 526, 1514, 1898, 1914, 1927
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 4 cut(s) 349, 817, 872, 1663
BssNAI GTATAC 1 cut(s) 1175
BssT1I CCWWGG 1 cut(s) 391
Bst1107I GTATAC 1 cut(s) 1175
Bst2UI CCWGG 2 cut(s) 1386, 1652
Bst4CI ACNGT 2 cut(s) 761, 1727
BstAPI GCANNNNNTGC 1 cut(s) 1935
BstC8I GCNNGC 5 cut(s) 941, 1453, 1623, 1821, 1940
BstDEI CTNAG 8 cut(s) 71, 611, 635, 980, 1055, 1104, 1401, 1456
BstEII GGTNACC 1 cut(s) 1042
BstF5I GGATG 7 cut(s) 365, 719, 860, 1304, 1510, 1540, 1863
BstKTI GATC 4 cut(s) 352, 820, 875, 1666
BstMAI GTCTC 8 cut(s) 69, 130, 302, 446, 566, 1132, 1438, 1866
BstMBI GATC 4 cut(s) 349, 817, 872, 1663
BstMWI GCNNNNNNNGC 3 cut(s) 1105, 1484, 1935
BstNI CCWGG 2 cut(s) 1386, 1652
BstNSI RCATGY 1 cut(s) 1455
BstPI GGTNACC 1 cut(s) 1042
BstSCI CCNGG 3 cut(s) 1384, 1650, 1765
BstSFI CTRYAG 1 cut(s) 1707
BstV1I GCAGC 1 cut(s) 1863
BstV2I GAAGAC 4 cut(s) 68, 653, 1070, 1334
BstX2I RGATCY 2 cut(s) 349, 872
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 2 cut(s) 349, 872
BstZ17I GTATAC 1 cut(s) 1175
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 111, 618, 1765
BtsCI GGATG 7 cut(s) 365, 719, 860, 1304, 1510, 1540, 1863
BtsIMutI CAGTG 4 cut(s) 1205, 1521, 1920, 1921
BveI ACCTGC 1 cut(s) 1456
Cac8I GCNNGC 5 cut(s) 941, 1453, 1623, 1821, 1940
Cfr13I GGNCC 2 cut(s) 97, 1763
Csp6I GTAC 3 cut(s) 1200, 1496, 1699
CviAII CATG 4 cut(s) 815, 1336, 1452, 1502
CviQI GTAC 3 cut(s) 1200, 1496, 1699
DdeI CTNAG 8 cut(s) 71, 611, 635, 980, 1055, 1104, 1401, 1456
DpnI GATC 4 cut(s) 351, 819, 874, 1665
DpnII GATC 4 cut(s) 349, 817, 872, 1663
DraI TTTAAA 1 cut(s) 1185
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 111
Eco31I GGTCTC 2 cut(s) 302, 1438
Eco32I GATATC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 4 cut(s) 148, 1346, 1601, 1793
Eco88I CYCGRG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 1042
EcoO65I GGTNACC 1 cut(s) 1042
EcoRI GAATTC 1 cut(s) 1538
EcoRII CCWGG 2 cut(s) 1384, 1650
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 391
EcoT22I ATGCAT 1 cut(s) 1228
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 4 cut(s) 818, 1339, 1455, 1505
FatI CATG 4 cut(s) 814, 1335, 1451, 1501
FauNDI CATATG 1 cut(s) 1374
FblI GTMKAC 1 cut(s) 1174
Fnu4HI GCNGC 1 cut(s) 1852
FokI GGATG 7 cut(s) 372, 726, 867, 1311, 1497, 1547, 1870
Fsp4HI GCNGC 1 cut(s) 1852
FspBI CTAG 2 cut(s) 1178, 1689
GluI GCNGC 1 cut(s) 1852
HaeIII GGCC 3 cut(s) 111, 618, 1765
HapII CCGG 1 cut(s) 1766
Hin1II CATG 4 cut(s) 818, 1339, 1455, 1505
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HindIII AAGCTT 3 cut(s) 407, 1106, 1523
HpaII CCGG 1 cut(s) 1766
HphI GGTGA 4 cut(s) 1010, 1054, 1658, 1789
Hpy166II GTNNAC 3 cut(s) 15, 97, 1175
Hpy188I TCNGA 8 cut(s) 167, 333, 636, 975, 1156, 1663, 1773, 1800
Hpy8I GTNNAC 3 cut(s) 15, 97, 1175
HpyAV CCTTC 9 cut(s) 110, 172, 238, 350, 903, 995, 1092, 1169, 1768
HpyCH4III ACNGT 2 cut(s) 761, 1727
HpyCH4IV ACGT 2 cut(s) 547, 1308
HpyF10VI GCNNNNNNNGC 3 cut(s) 1105, 1484, 1935
HpyF3I CTNAG 8 cut(s) 71, 611, 635, 980, 1055, 1104, 1401, 1456
HpySE526I ACGT 2 cut(s) 547, 1308
Hsp92II CATG 4 cut(s) 818, 1339, 1455, 1505
Kzo9I GATC 4 cut(s) 349, 817, 872, 1663
LmnI GCTCC 1 cut(s) 1004
Lsp1109I GCAGC 1 cut(s) 1863
LweI GCATC 5 cut(s) 704, 845, 1213, 1235, 1289
MaeI CTAG 2 cut(s) 1178, 1689
MaeII ACGT 2 cut(s) 547, 1308
MaeIII GTNAC 3 cut(s) 1025, 1042, 1721
MalI GATC 4 cut(s) 351, 819, 874, 1665
MboI GATC 4 cut(s) 349, 817, 872, 1663
MboII GAAGA 8 cut(s) 68, 164, 529, 653, 1070, 1339, 1652, 1823
MfeI CAATTG 2 cut(s) 600, 1270
MflI RGATCY 2 cut(s) 349, 872
MhlI GDGCHC 1 cut(s) 1509
MlyI GAGTC 4 cut(s) 132, 387, 457, 1800
MmeI TCCRAC 1 cut(s) 514
Mph1103I ATGCAT 1 cut(s) 1228
MroXI GAANNNNTTC 2 cut(s) 1331, 1368
MslI CAYNNNNRTG 1 cut(s) 1419
MspI CCGG 1 cut(s) 1766
MspR9I CCNGG 3 cut(s) 1386, 1652, 1767
MunI CAATTG 2 cut(s) 600, 1270
MvaI CCWGG 2 cut(s) 1386, 1652
MwoI GCNNNNNNNGC 3 cut(s) 1105, 1484, 1935
NciI CCSGG 1 cut(s) 1767
NdeI CATATG 1 cut(s) 1374
NdeII GATC 4 cut(s) 349, 817, 872, 1663
NlaIII CATG 4 cut(s) 818, 1339, 1455, 1505
NmuCI GTSAC 1 cut(s) 1042
NsiI ATGCAT 1 cut(s) 1228
NspI RCATGY 1 cut(s) 1455
PaeI GCATGC 1 cut(s) 1455
PaeR7I CTCGAG 1 cut(s) 443
PceI AGGCCT 1 cut(s) 111
PdmI GAANNNNTTC 2 cut(s) 1331, 1368
PfeI GAWTC 8 cut(s) 334, 421, 473, 520, 631, 1051, 1347, 1658
PflMI CCANNNNNTGG 1 cut(s) 1516
PfoI TCCNGGA 1 cut(s) 1384
PkrI GCNGC 1 cut(s) 1853
PleI GAGTC 4 cut(s) 132, 386, 456, 1799
PpsI GAGTC 4 cut(s) 132, 386, 456, 1799
PshBI ATTAAT 1 cut(s) 488
Psp1406I AACGTT 1 cut(s) 547
Psp6I CCWGG 2 cut(s) 1384, 1650
PspEI GGTNACC 1 cut(s) 1042
PspGI CCWGG 2 cut(s) 1384, 1650
PspPI GGNCC 2 cut(s) 97, 1763
PsuI RGATCY 2 cut(s) 349, 872
RsaI GTAC 3 cut(s) 1201, 1497, 1700
RsaNI GTAC 3 cut(s) 1200, 1496, 1699
RseI CAYNNNNRTG 1 cut(s) 1419
SatI GCNGC 1 cut(s) 1852
Sau3AI GATC 4 cut(s) 349, 817, 872, 1663
Sau96I GGNCC 2 cut(s) 97, 1763
ScaI AGTACT 1 cut(s) 1700
SchI GAGTC 4 cut(s) 132, 387, 457, 1800
ScrFI CCNGG 3 cut(s) 1386, 1652, 1767
SduI GDGCHC 1 cut(s) 1509
SfaNI GCATC 5 cut(s) 704, 845, 1213, 1235, 1289
SfcI CTRYAG 1 cut(s) 1707
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 1419
SmlI CTYRAG 4 cut(s) 133, 338, 443, 1109
SmoI CTYRAG 4 cut(s) 133, 338, 443, 1109
SphI GCATGC 1 cut(s) 1455
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 2 cut(s) 937, 1731
SspI AATATT 1 cut(s) 1396
SspMI CTAG 2 cut(s) 1178, 1689
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 1384, 1650, 1765
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 2 cut(s) 761, 1727
TaiI ACGT 2 cut(s) 550, 1311
TaqI TCGA 2 cut(s) 144, 444
TatI WGTACW 3 cut(s) 1199, 1495, 1698
TfiI GAWTC 8 cut(s) 334, 421, 473, 520, 631, 1051, 1347, 1658
TscAI CASTG 4 cut(s) 1212, 1521, 1921, 1927
TseFI GTSAC 1 cut(s) 1042
TseI GCWGC 1 cut(s) 1851
Tsp45I GTSAC 1 cut(s) 1042
TspDTI ATGAA 8 cut(s) 210, 265, 1255, 1324, 1361, 1422, 1476, 1551
TspGWI ACGGA 2 cut(s) 1254, 1784
TspRI CASTG 4 cut(s) 1212, 1521, 1921, 1927
Van91I CCANNNNNTGG 1 cut(s) 1516
VpaK11BI GGWCC 1 cut(s) 97
VspI ATTAAT 1 cut(s) 488
XapI RAATTY 8 cut(s) 58, 181, 256, 367, 1019, 1231, 1538, 1643
XceI RCATGY 1 cut(s) 1455
XcmI CCANNNNNNNNNTGG 2 cut(s) 389, 1421
XhoI CTCGAG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 1174
XmnI GAANNNNTTC 2 cut(s) 1331, 1368
XspI CTAG 2 cut(s) 1178, 1689
ZrmI AGTACT 1 cut(s) 1700
Zsp2I ATGCAT 1 cut(s) 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.