Rroxscaffold_4G00320080

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000105
Physical Location & Seq
Reverse (-)
48434168 .. 48439918
5751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320080.1

Sequence Viewer

Length: 2562 bp
ATGGCGTCAACCTATTCTCGTCGTCAATGGAAATACGATGTGTTTCTAAGTTTCAGGGGGTTTGATACCCGCAATGGTTTGACCGAAAATCTGTATTCTGCACTAACTCGAAAAGGAATTCTCACCTTTATGGATGACCGAGAGCTTGAGAGAGGAAAATCCATACGGCCTGAACTTTTAGGTGCAATTGAGGAGTCCAGATGTGCGATTGTCATTCTCTCAGAGAACTATGCTTGTTCGTCATGGTGCTTGGATGAACTCGTCAGGATTATTCAATGCATGAAAGAGATGGGCCAACAAGTCTTCCCCGTCTTCTACTTGGTGGATCCTTCTGATGTGCGGCACCAAAGGGGAAGGTTTGAGCTCAAAAGGGAACCCCAAGTAGAAGTAAGGGTACATGATGAAGTTTATGGGATTAATGAGGACAGATTAAATGCGTGGAGAGCTGCTTTGACACAGGTCGCCAATCTTTCTGGCTGGGATTTAAAAAATTATTTGTTATTGGGATTTAAGAATGATTTTTCTGATTTGAGGGATGGATACAAATGGATAGTAATGAGCATCCAACCTTTTACAGTAATGATTGAGGAAATTGTTAATCATATACTAAAGAAGTCCGTGTATGCATCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGAATCCCGCATTCATGATTTATTAAGCAATTACATATGTCCACAGCTTGTTGGGGGAACAGATTCAATCCAAGGCATGGTAATGGAGTTGACTAAATTACAAGTGGCTCATTGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTAGTCTTCTCCATATTCGTAATGTGGACCTTCCCAAAGGCCTCACTTGTCTTTCTAATTCCTTGAGACTCCTCGAATGGACTGGGTGTCCCTTAAGATCTCTCCCAAGAAAATTTAAAGCGGATGAACTTATTGAACTTAACTTGTGCCACAGCAACATTAAACAGCTCTGGAAGGGAACAAAGATGGACTGTTTTGAGGAAACTGATGTGAATAGGTCTGCAATAGAAATATCATCTATGCATGATCACAGAAAATATGTGAGATTTTCATTCTTTCATGAATACAAAGTAGTTTGGCGATCTTTAAATAAGTTCTTGCCTTCTGGATTGGTGCAAAAAGAGCCAATGAGTTTCCGCTTGCCTTTATCTGGTCTGTGTAATTTAACATATCTGAACCTGAGTAATTGCAATCTCGGTGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGGAACAAGTTTGTTCGTCTTCCTATAGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTGCAAGAGTTGTCAGACCTTCCATCAAATAGTATACTTGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACAGACTAGACAAATCATATTTCAATTTCATCAATTGCTTCAAGCTAAATGGCAACCAAGGATGCGATAACATAGCATTTGAAATGCTGAAGACATTCATGTATCAGGGAATCTCTAATAAGAGTGAAACTTGTCAAATTGTAATTCCTGGAAGTAATATTCCTGAGTGGTTCAGCCATCGGAGTGTTGGGTGTTCCTTAATTGTAAATCTTCCTGCACATTGGAATAACAGTCGGCTAATGGGATTTGCTTTGTGTGCTGTTTTTGTACTTCATAAGCACCATCTGGTGGATAAGCTTCCTAGAGATGAATTCAAGACCTTTAATGCAACACATCATCTTGTATGTTGCTTGATGCTTGATGGAAGAAAATTGGAAGTATATGGCAAACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTAAGTCAGATCACCTGTGGATGTTCTATGTATCTCGTGATAAATACTTTGGTACAGAGTGTTGGCATAACAGTTGCAGTCAGCTTGAGTTCTTATTTAAAACCAGAGGGCCGGGTCTGAAGGTGAAGGAGTGTGGAGTCCGTCTCATATATAAGCAAGATGTGCAAGATTTGAACCAAACAACCAGTCAATCAAGCAGTAGGGTGTCTCCTTATGAGGATATATTGATTGCAGGGGAAACCGATCATGAATGGACAATGCCTCCTCTTCTCTCGTTTGAATTTCTGCAGAAATTACTTTCTGGAGCTCTCATGCCTTCATCTTTTACAGTTAGTGTATATGATGAAGATACTGCTGTGAGAAATTCTAAAGGACACCCCTTTGCCGGTTCATATATTTGTCCTCACAAAAAATTTTCGTCTGTAAATCTGGATTATGTTGTAGTTAAAGGTATTCCATTTGATATAGATAGCGAGGATCGAGGCAGTACAGGTGTACAAAGGTTACTTGAACTTTCCTCGAGTAGTGCAAATTCATGTGGACTTGATCAGCTTACTTTCCTCTTTACGCTTTCACTAATGAAACTTGAATTCATCAAGAAGGGGGGAAATAGTTTGATGTTGGTTTTAACTACAGTTGGCTTAAAGGTGGAATTAACTGCTAGAAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

853

Amino Acids

97.4

Weight (kDa)

7.7

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 164 2.2e-44 TIR domain
TIR_2 PF13676 14 - 107 4.3e-14 TIR domain
C-JID PF20160 536 - 685 6.2e-20 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 2 cut(s) 736, 1750
AccI GTMKAC 1 cut(s) 1399
AciI CCGC 5 cut(s) 70, 340, 667, 926, 1162
AclWI GGATC 3 cut(s) 320, 333, 2373
AcuI CTGAAG 2 cut(s) 1571, 2027
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 396, 1426, 1731, 1942, 2377, 2385
AfiI CCNNNNNNNGG 4 cut(s) 736, 1175, 1750, 2273
AflII CTTAAG 1 cut(s) 898
AhdI GACNNNNNGTC 1 cut(s) 891
AjnI CCWGG 2 cut(s) 1609, 1884
AjuI GAANNNNNNNTTGG 2 cut(s) 1331, 1363
Alw21I GWGCWC 2 cut(s) 366, 2197
Alw26I GTCTC 5 cut(s) 804, 865, 1357, 2036, 2100
AlwI GGATC 3 cut(s) 320, 333, 2373
Ama87I CYCGRG 1 cut(s) 2407
AoxI GGCC 4 cut(s) 167, 292, 844, 1997
ApeKI GCWGC 1 cut(s) 446
ArsI GACNNNNNNTTYG 2 cut(s) 2059, 2091
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 2 cut(s) 721, 1556
AspS9I GGNCC 3 cut(s) 292, 832, 1997
AsuC2I CCSGG 1 cut(s) 2001
AsuHPI GGTGA 5 cut(s) 115, 1235, 1279, 1892, 2023
AvaI CYCGRG 1 cut(s) 2407
AvaII GGWCC 1 cut(s) 832
BaeI ACNNNNGTAYC 2 cut(s) 2229, 2262
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 2 cut(s) 366, 2197
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BauI CACGAG 1 cut(s) 1923
BbsI GAAGAC 5 cut(s) 295, 304, 803, 1295, 1559
Bbv12I GWGCWC 2 cut(s) 366, 2197
BbvI GCAGC 1 cut(s) 433
BccI CCATC 8 cut(s) 283, 530, 985, 1396, 1412, 1647, 1752, 1817
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 1611, 1886
BciVI GTATCC 1 cut(s) 533
BclI TGATCA 2 cut(s) 1051, 2434
BcnI CCSGG 1 cut(s) 2001
BcoDI GTCTC 5 cut(s) 804, 865, 1357, 2036, 2100
BfaI CTAG 3 cut(s) 1469, 1764, 2550
BfmI CTRYAG 3 cut(s) 1308, 2174, 2520
BfrI CTTAAG 1 cut(s) 898
BfuI GTATCC 1 cut(s) 533
BglII AGATCT 1 cut(s) 902
BisI GCNGC 2 cut(s) 341, 447
BlsI GCNGC 2 cut(s) 342, 448
Bme1390I CCNGG 3 cut(s) 1611, 1886, 2001
Bme18I GGWCC 1 cut(s) 832
BmeRI GACNNNNNGTC 1 cut(s) 891
BmeT110I CYCGRG 1 cut(s) 2407
BmgT120I GGNCC 3 cut(s) 292, 832, 1997
BmiI GGNNCC 3 cut(s) 327, 344, 375
BmrFI CCNGG 3 cut(s) 1611, 1886, 2001
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 6 cut(s) 570, 635, 1438, 1460, 1514, 1806
BmuI ACTGGG 1 cut(s) 897
BoxI GACNNNNGTC 1 cut(s) 458
BpiI GAAGAC 5 cut(s) 295, 304, 803, 1295, 1559
BplI GAGNNNNNCTC 2 cut(s) 2016, 2048
BpmI CTGGAG 1 cut(s) 2211
BpuEI CTTGAG 4 cut(s) 167, 889, 1355, 1994
BpuMI CCSGG 1 cut(s) 2001
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 730, 1519
BsaXI ACNNNNNCTCC 2 cut(s) 2134, 2164
Bsc4I CCNNNNNNNGG 4 cut(s) 736, 1175, 1750, 2273
Bse118I RCCGGY 1 cut(s) 2273
Bse1I ACTGG 2 cut(s) 892, 2073
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 2 cut(s) 1611, 1886
BseDI CCNNGG 2 cut(s) 730, 1519
BseGI GGATG 7 cut(s) 139, 259, 541, 561, 934, 1529, 1914
BseLI CCNNNNNNNGG 4 cut(s) 736, 1175, 1750, 2273
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 234, 1196, 1617
BseNI ACTGG 2 cut(s) 892, 2073
BseRI GAGGAG 3 cut(s) 206, 866, 2142
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 477
BsgI GTGCAG 2 cut(s) 84, 1662
BshFI GGCC 4 cut(s) 169, 294, 846, 1999
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 366, 2197
BsiHKCI CYCGRG 1 cut(s) 2407
BsiSI CCGG 2 cut(s) 2000, 2274
BslFI GGGAC 1 cut(s) 879
BslI CCNNNNNNNGG 4 cut(s) 736, 1175, 1750, 2273
BsmAI GTCTC 5 cut(s) 804, 865, 1357, 2036, 2100
BsmBI CGTCTC 1 cut(s) 2036
BsmFI GGGAC 1 cut(s) 879
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 4 cut(s) 169, 294, 846, 1999
BsoBI CYCGRG 1 cut(s) 2407
Bsp1286I GDGCHC 2 cut(s) 366, 2197
Bsp1407I TGTACA 1 cut(s) 2383
Bsp143I GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
BspACI CCGC 5 cut(s) 70, 340, 667, 926, 1162
BspANI GGCC 4 cut(s) 169, 294, 846, 1999
BspCNI CTCAG 3 cut(s) 233, 1197, 1618
BspHI TCATGA 3 cut(s) 673, 1084, 2134
BspLI GGNNCC 3 cut(s) 327, 344, 375
BspMAI CTGCAG 1 cut(s) 2178
BspPI GGATC 3 cut(s) 320, 333, 2373
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 898
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 2273
BsrGI TGTACA 1 cut(s) 2383
BsrI ACTGG 2 cut(s) 892, 2073
BssAI RCCGGY 1 cut(s) 2273
BssECI CCNNGG 2 cut(s) 730, 1519
BssMI GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
BssNAI GTATAC 1 cut(s) 1400
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1923
BssT1I CCWWGG 2 cut(s) 730, 1519
Bst1107I GTATAC 1 cut(s) 1400
Bst2BI CACGAG 1 cut(s) 1923
Bst2UI CCWGG 2 cut(s) 1611, 1886
Bst4CI ACNGT 6 cut(s) 577, 998, 1694, 1961, 2218, 2524
Bst6I CTCTTC 1 cut(s) 2160
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 898
BstAPI GCANNNNNTGC 1 cut(s) 2050
BstAUI TGTACA 1 cut(s) 2383
BstC8I GCNNGC 2 cut(s) 1166, 1857
BstDEI CTNAG 7 cut(s) 47, 220, 806, 1205, 1280, 1329, 1626
BstEII GGTNACC 1 cut(s) 1267
BstF5I GGATG 7 cut(s) 139, 259, 541, 561, 934, 1529, 1914
BstKTI GATC 8 cut(s) 328, 905, 1054, 1109, 1900, 2134, 2368, 2437
BstMAI GTCTC 5 cut(s) 804, 865, 1357, 2036, 2100
BstMBI GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
BstMWI GCNNNNNNNGC 5 cut(s) 443, 1147, 1330, 1718, 2050
BstNI CCWGG 2 cut(s) 1611, 1886
BstPAI GACNNNNGTC 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 1267
BstSCI CCNGG 3 cut(s) 1609, 1884, 1999
BstSFI CTRYAG 3 cut(s) 1308, 2174, 2520
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 5 cut(s) 295, 304, 803, 1295, 1559
BstX2I RGATCY 2 cut(s) 325, 902
BstYI RGATCY 2 cut(s) 325, 902
BstZ17I GTATAC 1 cut(s) 1400
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 4 cut(s) 169, 294, 846, 1999
BtsCI GGATG 7 cut(s) 139, 259, 541, 561, 934, 1529, 1914
BtsIMutI CAGTG 1 cut(s) 1430
Cac8I GCNNGC 2 cut(s) 1166, 1857
CciI TCATGA 3 cut(s) 673, 1084, 2134
Cfr10I RCCGGY 1 cut(s) 2273
Cfr13I GGNCC 3 cut(s) 292, 832, 1997
Csp6I GTAC 6 cut(s) 395, 1425, 1730, 1941, 2376, 2384
CviQI GTAC 6 cut(s) 395, 1425, 1730, 1941, 2376, 2384
DdeI CTNAG 7 cut(s) 47, 220, 806, 1205, 1280, 1329, 1626
DpnI GATC 8 cut(s) 327, 904, 1053, 1108, 1899, 2133, 2367, 2436
DpnII GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
DraI TTTAAA 4 cut(s) 486, 922, 1113, 1987
DriI GACNNNNNGTC 1 cut(s) 891
Eam1104I CTCTTC 1 cut(s) 2160
Eam1105I GACNNNNNGTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 2160
Ecl136II GAGCTC 2 cut(s) 364, 2195
Eco130I CCWWGG 2 cut(s) 730, 1519
Eco147I AGGCCT 1 cut(s) 846
Eco24I GRGCYC 2 cut(s) 366, 2197
Eco47I GGWCC 1 cut(s) 832
Eco53kI GAGCTC 2 cut(s) 364, 2195
Eco57I CTGAAG 2 cut(s) 1571, 2027
Eco88I CYCGRG 1 cut(s) 2407
Eco91I GGTNACC 1 cut(s) 1267
EcoICRI GAGCTC 2 cut(s) 364, 2195
EcoO65I GGTNACC 1 cut(s) 1267
EcoRI GAATTC 3 cut(s) 117, 1772, 2477
EcoRII CCWGG 2 cut(s) 1609, 1884
EcoT14I CCWWGG 2 cut(s) 730, 1519
EcoT22I ATGCAT 4 cut(s) 281, 628, 1050, 1453
EcoT38I GRGCYC 2 cut(s) 366, 2197
ErhI CCWWGG 2 cut(s) 730, 1519
Esp3I CGTCTC 1 cut(s) 2036
FaqI GGGAC 1 cut(s) 879
FauI CCCGC 2 cut(s) 77, 674
FauNDI CATATG 1 cut(s) 695
FbaI TGATCA 2 cut(s) 1051, 2434
FblI GTMKAC 1 cut(s) 1399
Fnu4HI GCNGC 2 cut(s) 341, 447
FokI GGATG 7 cut(s) 146, 266, 548, 548, 941, 1536, 1921
FriOI GRGCYC 2 cut(s) 366, 2197
Fsp4HI GCNGC 2 cut(s) 341, 447
FspBI CTAG 3 cut(s) 1469, 1764, 2550
GluI GCNGC 2 cut(s) 341, 447
GsaI CCCAGC 1 cut(s) 481
GsuI CTGGAG 1 cut(s) 2211
HaeIII GGCC 4 cut(s) 169, 294, 846, 1999
HapII CCGG 2 cut(s) 2000, 2274
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 9, 640, 750
HindII GTYRAC 3 cut(s) 9, 640, 750
HindIII AAGCTT 2 cut(s) 1331, 1757
HinfI GANTC 7 cut(s) 194, 662, 722, 873, 1276, 1572, 2025
HpaII CCGG 2 cut(s) 2000, 2274
HphI GGTGA 5 cut(s) 115, 1235, 1279, 1892, 2023
Hpy166II GTNNAC 8 cut(s) 9, 640, 701, 750, 832, 1400, 2384, 2429
Hpy188I TCNGA 8 cut(s) 223, 334, 526, 1200, 1381, 1644, 1897, 2007
Hpy8I GTNNAC 8 cut(s) 9, 640, 701, 750, 832, 1400, 2384, 2429
Hpy99I CGWCG 1 cut(s) 24
HpyCH4III ACNGT 6 cut(s) 577, 998, 1694, 1961, 2218, 2524
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 1147, 1330, 1718, 2050
HpyF3I CTNAG 7 cut(s) 47, 220, 806, 1205, 1280, 1329, 1626
Hsp92I GRCGYC 1 cut(s) 5
Ksp22I TGATCA 2 cut(s) 1051, 2434
Kzo9I GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
LmnI GCTCC 2 cut(s) 1229, 2192
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 6 cut(s) 570, 635, 1438, 1460, 1514, 1806
MaeI CTAG 3 cut(s) 1469, 1764, 2550
MaeIII GTNAC 3 cut(s) 1250, 1267, 2391
MalI GATC 8 cut(s) 327, 904, 1053, 1108, 1899, 2133, 2367, 2436
MboI GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
MfeI CAATTG 2 cut(s) 186, 1495
MflI RGATCY 2 cut(s) 325, 902
MhlI GDGCHC 2 cut(s) 366, 2197
MlyI GAGTC 3 cut(s) 203, 867, 2034
MmeI TCCRAC 1 cut(s) 589
Mph1103I ATGCAT 4 cut(s) 281, 628, 1050, 1453
MroXI GAANNNNTTC 2 cut(s) 721, 1556
MslI CAYNNNNRTG 4 cut(s) 128, 656, 740, 1644
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 2 cut(s) 2000, 2274
MspR9I CCNGG 3 cut(s) 1611, 1886, 2001
MunI CAATTG 2 cut(s) 186, 1495
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 2 cut(s) 1611, 1886
MwoI GCNNNNNNNGC 5 cut(s) 443, 1147, 1330, 1718, 2050
NciI CCSGG 1 cut(s) 2001
NdeI CATATG 1 cut(s) 695
NdeII GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
NlaIV GGNNCC 3 cut(s) 327, 344, 375
NmuCI GTSAC 1 cut(s) 1267
NsiI ATGCAT 4 cut(s) 281, 628, 1050, 1453
PaeR7I CTCGAG 1 cut(s) 2407
PagI TCATGA 3 cut(s) 673, 1084, 2134
PceI AGGCCT 1 cut(s) 846
PctI GAATGC 1 cut(s) 669
PdmI GAANNNNTTC 2 cut(s) 721, 1556
PfeI GAWTC 4 cut(s) 662, 722, 1276, 1572
PflMI CCANNNNNTGG 2 cut(s) 736, 1750
PfoI TCCNGGA 1 cut(s) 1609
PkrI GCNGC 2 cut(s) 342, 448
PleI GAGTC 3 cut(s) 202, 867, 2033
PpsI GAGTC 3 cut(s) 202, 867, 2033
PshAI GACNNNNGTC 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 417
Psp124BI GAGCTC 2 cut(s) 366, 2197
Psp6I CCWGG 2 cut(s) 1609, 1884
PspEI GGTNACC 1 cut(s) 1267
PspFI CCCAGC 1 cut(s) 477
PspGI CCWGG 2 cut(s) 1609, 1884
PspN4I GGNNCC 3 cut(s) 327, 344, 375
PspPI GGNCC 3 cut(s) 292, 832, 1997
PspXI VCTCGAGB 1 cut(s) 2407
PstI CTGCAG 1 cut(s) 2178
PsuI RGATCY 2 cut(s) 325, 902
RsaI GTAC 6 cut(s) 396, 1426, 1731, 1942, 2377, 2385
RsaNI GTAC 6 cut(s) 395, 1425, 1730, 1941, 2376, 2384
RseI CAYNNNNRTG 4 cut(s) 128, 656, 740, 1644
SacI GAGCTC 2 cut(s) 366, 2197
SatI GCNGC 2 cut(s) 341, 447
Sau3AI GATC 8 cut(s) 325, 902, 1051, 1106, 1897, 2131, 2365, 2434
Sau96I GGNCC 3 cut(s) 292, 832, 1997
SchI GAGTC 3 cut(s) 203, 867, 2034
ScrFI CCNGG 3 cut(s) 1611, 1886, 2001
SduI GDGCHC 2 cut(s) 366, 2197
SfaNI GCATC 6 cut(s) 570, 635, 1438, 1460, 1514, 1806
SfcI CTRYAG 3 cut(s) 1308, 2174, 2520
Sfr274I CTCGAG 1 cut(s) 2407
SinI GGWCC 1 cut(s) 832
SlaI CTCGAG 1 cut(s) 2407
SmiMI CAYNNNNRTG 4 cut(s) 128, 656, 740, 1644
SmlI CTYRAG 6 cut(s) 146, 868, 898, 1334, 1973, 2407
SmoI CTYRAG 6 cut(s) 146, 868, 898, 1334, 1973, 2407
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 5 cut(s) 70, 340, 667, 926, 1162
SspI AATATT 1 cut(s) 1621
SspMI CTAG 3 cut(s) 1469, 1764, 2550
SstI GAGCTC 2 cut(s) 366, 2197
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 1609, 1884, 1999
StyI CCWWGG 2 cut(s) 730, 1519
TaaI ACNGT 6 cut(s) 577, 998, 1694, 1961, 2218, 2524
TaqI TCGA 4 cut(s) 109, 879, 2368, 2408
TaqII GACCGA 2 cut(s) 98, 153
TatI WGTACW 4 cut(s) 1424, 1729, 2375, 2383
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 4 cut(s) 662, 722, 1276, 1572
TscAI CASTG 1 cut(s) 1437
TseFI GTSAC 1 cut(s) 1267
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 1267
TspGWI ACGGA 2 cut(s) 607, 2018
TspRI CASTG 1 cut(s) 1437
Van91I CCANNNNNTGG 2 cut(s) 736, 1750
Vha464I CTTAAG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 832
VspI ATTAAT 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 1646
XhoI CTCGAG 1 cut(s) 2407
XmiI GTMKAC 1 cut(s) 1399
XmnI GAANNNNTTC 2 cut(s) 721, 1556
XspI CTAG 3 cut(s) 1469, 1764, 2550
Zsp2I ATGCAT 4 cut(s) 281, 628, 1050, 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.