TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 147 - 218 | 2.2e-18 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 646 |
| AciI | CCGC | 2 cut(s) | 13, 274 |
| AclWI | GGATC | 2 cut(s) | 63, 507 |
| AcuI | CTGAAG | 4 cut(s) | 401, 678, 714, 734 |
| AdeI | CACNNNGTG | 1 cut(s) | 709 |
| AfaI | GTAC | 4 cut(s) | 101, 367, 388, 482 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 357, 545 |
| AgsI | TTSAA | 3 cut(s) | 203, 212, 235 |
| AjnI | CCWGG | 2 cut(s) | 538, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 528, 560 |
| AluBI | AGCT | 3 cut(s) | 206, 243, 532 |
| AluI | AGCT | 3 cut(s) | 206, 243, 532 |
| Alw26I | GTCTC | 1 cut(s) | 693 |
| AlwI | GGATC | 2 cut(s) | 63, 507 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 207, 242, 639 |
| AspS9I | GGNCC | 1 cut(s) | 104 |
| AsuC2I | CCSGG | 1 cut(s) | 108 |
| AsuHPI | GGTGA | 1 cut(s) | 43 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| BauI | CACGAG | 1 cut(s) | 195 |
| BbsI | GAAGAC | 1 cut(s) | 352 |
| BccI | CCATC | 1 cut(s) | 425 |
| BciT130I | CCWGG | 2 cut(s) | 540, 666 |
| BcnI | CCSGG | 1 cut(s) | 108 |
| BcoDI | GTCTC | 1 cut(s) | 693 |
| BfaI | CTAG | 3 cut(s) | 437, 518, 533 |
| BisI | GCNGC | 1 cut(s) | 274 |
| BlsI | GCNGC | 1 cut(s) | 275 |
| Bme1390I | CCNGG | 3 cut(s) | 108, 540, 666 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 1 cut(s) | 104 |
| BmrFI | CCNGG | 3 cut(s) | 108, 540, 666 |
| BmrI | ACTGGG | 1 cut(s) | 195 |
| BmsI | GCATC | 2 cut(s) | 157, 594 |
| BmuI | ACTGGG | 1 cut(s) | 195 |
| BpiI | GAAGAC | 1 cut(s) | 352 |
| Bpu10I | CCTNAGC | 2 cut(s) | 149, 294 |
| BpuMI | CCSGG | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| BsaI | GGTCTC | 1 cut(s) | 693 |
| BsaJI | CCNNGG | 1 cut(s) | 107 |
| BsaWI | WCCGGW | 1 cut(s) | 133 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 357, 545 |
| Bse1I | ACTGG | 2 cut(s) | 101, 190 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseBI | CCWGG | 2 cut(s) | 540, 666 |
| BseDI | CCNNGG | 1 cut(s) | 107 |
| BseGI | GGATG | 1 cut(s) | 415 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 357, 545 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseNI | ACTGG | 2 cut(s) | 101, 190 |
| BsiSI | CCGG | 2 cut(s) | 107, 134 |
| BslFI | GGGAC | 1 cut(s) | 637 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 357, 545 |
| BsmAI | GTCTC | 1 cut(s) | 693 |
| BsmFI | GGGAC | 1 cut(s) | 637 |
| Bso31I | GGTCTC | 1 cut(s) | 693 |
| Bsp1407I | TGTACA | 1 cut(s) | 480 |
| Bsp143I | GATC | 2 cut(s) | 55, 499 |
| BspACI | CCGC | 2 cut(s) | 13, 274 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspPI | GGATC | 2 cut(s) | 63, 507 |
| BspQI | GCTCTTC | 1 cut(s) | 654 |
| BspTNI | GGTCTC | 1 cut(s) | 693 |
| BsrGI | TGTACA | 1 cut(s) | 480 |
| BsrI | ACTGG | 2 cut(s) | 101, 190 |
| BssECI | CCNNGG | 1 cut(s) | 107 |
| BssMI | GATC | 2 cut(s) | 55, 499 |
| BssSI | CACGAG | 1 cut(s) | 195 |
| Bst2BI | CACGAG | 1 cut(s) | 195 |
| Bst2UI | CCWGG | 2 cut(s) | 540, 666 |
| Bst4CI | ACNGT | 4 cut(s) | 104, 386, 600, 651 |
| Bst6I | CTCTTC | 1 cut(s) | 654 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 613 |
| BstAUI | TGTACA | 1 cut(s) | 480 |
| BstC8I | GCNNGC | 1 cut(s) | 530 |
| BstDEI | CTNAG | 2 cut(s) | 149, 294 |
| BstF5I | GGATG | 1 cut(s) | 415 |
| BstKTI | GATC | 2 cut(s) | 58, 502 |
| BstMAI | GTCTC | 1 cut(s) | 693 |
| BstMBI | GATC | 2 cut(s) | 55, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 154, 613 |
| BstNI | CCWGG | 2 cut(s) | 540, 666 |
| BstSCI | CCNGG | 3 cut(s) | 106, 538, 664 |
| BstV2I | GAAGAC | 1 cut(s) | 352 |
| BtsCI | GGATG | 1 cut(s) | 415 |
| Cac8I | GCNNGC | 1 cut(s) | 530 |
| Cfr13I | GGNCC | 1 cut(s) | 104 |
| CpoI | CGGWCCG | 1 cut(s) | 104 |
| Csp6I | GTAC | 4 cut(s) | 100, 366, 387, 481 |
| CspI | CGGWCCG | 1 cut(s) | 104 |
| CviAII | CATG | 3 cut(s) | 158, 178, 608 |
| CviQI | GTAC | 4 cut(s) | 100, 366, 387, 481 |
| DdeI | CTNAG | 2 cut(s) | 149, 294 |
| DpnI | GATC | 2 cut(s) | 57, 501 |
| DpnII | GATC | 2 cut(s) | 55, 499 |
| DraI | TTTAAA | 1 cut(s) | 225 |
| DraIII | CACNNNGTG | 1 cut(s) | 709 |
| Eam1104I | CTCTTC | 1 cut(s) | 654 |
| EarI | CTCTTC | 1 cut(s) | 654 |
| Eco31I | GGTCTC | 1 cut(s) | 693 |
| Eco32I | GATATC | 1 cut(s) | 700 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| Eco57I | CTGAAG | 4 cut(s) | 401, 678, 714, 734 |
| EcoRII | CCWGG | 2 cut(s) | 538, 664 |
| EcoRV | GATATC | 1 cut(s) | 700 |
| EcoT22I | ATGCAT | 1 cut(s) | 609 |
| FaeI | CATG | 3 cut(s) | 161, 181, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 227, 259 |
| FaqI | GGGAC | 1 cut(s) | 637 |
| FatI | CATG | 3 cut(s) | 157, 177, 607 |
| FblI | GTMKAC | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 1 cut(s) | 274 |
| FokI | GGATG | 1 cut(s) | 422 |
| Fsp4HI | GCNGC | 1 cut(s) | 274 |
| FspBI | CTAG | 3 cut(s) | 437, 518, 533 |
| GluI | GCNGC | 1 cut(s) | 274 |
| HapII | CCGG | 2 cut(s) | 107, 134 |
| Hin1II | CATG | 3 cut(s) | 161, 181, 611 |
| HincII | GTYRAC | 2 cut(s) | 192, 647 |
| HindII | GTYRAC | 2 cut(s) | 192, 647 |
| HindIII | AAGCTT | 1 cut(s) | 241 |
| HpaI | GTTAAC | 1 cut(s) | 192 |
| HpaII | CCGG | 2 cut(s) | 107, 134 |
| HphI | GGTGA | 1 cut(s) | 43 |
| Hpy166II | GTNNAC | 5 cut(s) | 23, 192, 389, 647, 671 |
| Hpy188I | TCNGA | 1 cut(s) | 420 |
| Hpy188III | TCNNGA | 3 cut(s) | 92, 235, 692 |
| Hpy8I | GTNNAC | 5 cut(s) | 23, 192, 389, 647, 671 |
| Hpy99I | CGWCG | 1 cut(s) | 648 |
| HpyAV | CCTTC | 1 cut(s) | 484 |
| HpyCH4III | ACNGT | 4 cut(s) | 104, 386, 600, 651 |
| HpyCH4V | TGCA | 2 cut(s) | 528, 607 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 154, 613 |
| HpyF3I | CTNAG | 2 cut(s) | 149, 294 |
| Hsp92II | CATG | 3 cut(s) | 161, 181, 611 |
| KspAI | GTTAAC | 1 cut(s) | 192 |
| Kzo9I | GATC | 2 cut(s) | 55, 499 |
| LguI | GCTCTTC | 1 cut(s) | 654 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LweI | GCATC | 2 cut(s) | 157, 594 |
| MaeI | CTAG | 3 cut(s) | 437, 518, 533 |
| MaeIII | GTNAC | 2 cut(s) | 124, 505 |
| MalI | GATC | 2 cut(s) | 57, 501 |
| MboI | GATC | 2 cut(s) | 55, 499 |
| MboII | GAAGA | 5 cut(s) | 266, 357, 671, 707, 727 |
| MluCI | AATT | 3 cut(s) | 42, 68, 77 |
| MnlI | CCTC | 3 cut(s) | 369, 433, 556 |
| Mph1103I | ATGCAT | 1 cut(s) | 609 |
| MroXI | GAANNNNTTC | 3 cut(s) | 207, 242, 639 |
| MseI | TTAA | 4 cut(s) | 191, 224, 551, 588 |
| MspI | CCGG | 2 cut(s) | 107, 134 |
| MspR9I | CCNGG | 3 cut(s) | 108, 540, 666 |
| MvaI | CCWGG | 2 cut(s) | 540, 666 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 154, 613 |
| NciI | CCSGG | 1 cut(s) | 108 |
| NdeII | GATC | 2 cut(s) | 55, 499 |
| NlaIII | CATG | 3 cut(s) | 161, 181, 611 |
| NmuCI | GTSAC | 1 cut(s) | 505 |
| NsiI | ATGCAT | 1 cut(s) | 609 |
| PciSI | GCTCTTC | 1 cut(s) | 654 |
| PdmI | GAANNNNTTC | 3 cut(s) | 207, 242, 639 |
| PkrI | GCNGC | 1 cut(s) | 275 |
| Psp6I | CCWGG | 2 cut(s) | 538, 664 |
| PspGI | CCWGG | 2 cut(s) | 538, 664 |
| PspPI | GGNCC | 1 cut(s) | 104 |
| RsaI | GTAC | 4 cut(s) | 101, 367, 388, 482 |
| RsaNI | GTAC | 4 cut(s) | 100, 366, 387, 481 |
| Rsr2I | CGGWCCG | 1 cut(s) | 104 |
| RsrII | CGGWCCG | 1 cut(s) | 104 |
| SalI | GTCGAC | 1 cut(s) | 645 |
| SapI | GCTCTTC | 1 cut(s) | 654 |
| SaqAI | TTAA | 4 cut(s) | 191, 224, 551, 588 |
| SatI | GCNGC | 1 cut(s) | 274 |
| Sau3AI | GATC | 2 cut(s) | 55, 499 |
| Sau96I | GGNCC | 1 cut(s) | 104 |
| ScrFI | CCNGG | 3 cut(s) | 108, 540, 666 |
| SetI | ASST | 8 cut(s) | 33, 208, 245, 328, 534, 541, 670, 729 |
| SfaNI | GCATC | 2 cut(s) | 157, 594 |
| SinI | GGWCC | 1 cut(s) | 104 |
| Sse9I | AATT | 3 cut(s) | 42, 68, 77 |
| SsiI | CCGC | 2 cut(s) | 13, 274 |
| SspMI | CTAG | 3 cut(s) | 437, 518, 533 |
| StyD4I | CCNGG | 3 cut(s) | 106, 538, 664 |
| TaaI | ACNGT | 4 cut(s) | 104, 386, 600, 651 |
| TaqI | TCGA | 2 cut(s) | 602, 646 |
| TasI | AATT | 3 cut(s) | 42, 68, 77 |
| TatI | WGTACW | 3 cut(s) | 365, 386, 480 |
| TauI | GCSGC | 1 cut(s) | 276 |
| Tru1I | TTAA | 4 cut(s) | 191, 224, 551, 588 |
| Tru9I | TTAA | 4 cut(s) | 191, 224, 551, 588 |
| TseFI | GTSAC | 1 cut(s) | 505 |
| Tsp45I | GTSAC | 1 cut(s) | 505 |
| TspDTI | ATGAA | 2 cut(s) | 131, 369 |
| TspGWI | ACGGA | 1 cut(s) | 294 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| XmiI | GTMKAC | 1 cut(s) | 646 |
| XmnI | GAANNNNTTC | 3 cut(s) | 207, 242, 639 |
| XspI | CTAG | 3 cut(s) | 437, 518, 533 |
| Zsp2I | ATGCAT | 1 cut(s) | 609 |