RLG00000030382

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000105
Physical Location & Seq
Forward (+)
60463682 .. 60475156
11475 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030382

Sequence Viewer

Length: 3630 bp
ATGGCGTCAACCTCTTCTCATCGTCAATGGAAATACGACGTGTTTATAAGTTTCAGCGGGGAAGATACCCGCAATACTTTTACCAGTTTTCTGTATTCTGCACTAAATCTGAGAGGAATTCTCACCTTTCTGGATGACCGAGAGCTTGAGAAAGGAAAATCCATTAGCTCTGAACTTTTAGCTGCAATTGAGCAGTCTAGATCTGCGATTGTCATTCTCTCACCCAACTATGCTCGTTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGACATGGGCCAACAAGTCCTCCCCGTCTTCTACGACGTGGATCCTTCTGATGTGCGGCACCAAAGGGGACATTTTGAGCTCAAAAGGAAAACCCAAGTAGATGTGGAAGTAAGGGAACATGAAGAAGTTTATGGCAAGAATGATGAGGACAGACTAAGTGCGTGGAGAGCTGCTTTGACTGAGGTCGCCAATCTTTCTGGCTGGGATTCCAAGAAATATTCATATGAAGCAAGAGTAATTGACGAAATTGTTAAGCATATACTAAGGAAGTCCGCGTATACATCTTCAAGTGTTTTCAAGGACTTAATAGGAATGGATTCCCGCATTCATGATTTATTAAGCAATTACATATGTCCGCACCTTCATAGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAGGTAAGACAACACTTGCTCGAGCTATCCATGATCAAATTTGTCAGGATTTTGACCGAACCTGCTTTCTTTCCAATGTTAGAGAAATGTCTAAAAACAATGGCCTAGTTTCTCTTCAAGAAAAACTTCTTTCCAGAATCCTGATGGCAAAAATTGAAAATATAGAGGATGAATACACAGGAGCTGCTATGATAGAAAGGCGGTTGTGTAGAATAAAGGTGCTTGTTGTTATTGATGATGTGGATCAGTTGACACAATTAGAGAAATTGGCTGGAAGTCGCAACTGGTTTGGTCCAGGGACTAGAATTATCATAACCACCACAGATATTCAGTTGTTAAAGGCACATGATGTTGATGCTACATACAAGGCTAACGGGTTAAACTGTGATGAAGCACTTCAACTTTTGAGTTTGAAGGCTTTTAAGAAATGTCCCCCACCAGAAGATTATTTGCATCCGTGCTATGATATTATAGGGTATGCTAAGGGGCTTCCGTTGGCTCTCGTGGTTTTAGGTTCTTTTCTATTTGGTAGAAGAACTGATGAATGGGCAAGTGCAATAGATAGGCTAAAGAACACACCAGATAAACGCATTATTGATGTGCTTCGGATTAGTTTTGATGGACTTGATCAAAAAGACAGAGAAATATTCCTACATATTGCTTGCTTTTACAAGGGGAAGGATAAGGATCGTGTGACACAAATACTAGACTATTGCCAGCTAAACCCTGTCATTGGTTTGAGTGTTCTTGCTGATAGATCTCTCATAACTATCTCCAACAACGAACTGTGGATGCATGATTTGCTACAAGAATTGGGCTGGGAAATTGTTCGTGAACAGTCTCCTAAAATGCCAGGCAAACGTAGTAGATTATGGTCTCATGAAGACATAAACAATGTGCTGAAGAAAAATATGAATTTTGACAAGCTGAAGTTCATCAAACTCTGCCATTCTCAAAAAATTGTGGAGACCCCAGACCTCGCAGGTGTTCAGAATCTTGAGACGTTAGATCTTGAAGGATGTTCTCATTTGGTAAGAATCCATCAATCCCTTGGATTTCTCAAAAAGCTTATTGTCCTGAATCTTAAAGACTGCAAAAGTCTGCAGAGTCTGCCAAGTAGAATTGAAATGGAATCTCTTGAAACATTAATTCTTTCTAACTGCTCAAAAGTTAAGAAGATTCCCGAGTTTGTTGGAAATATGGAATGTTTGTTGGTGCTTTATCTTGATGAGACTGCCATTGAGGAACTGCCTGATTCAATTGAACGGCTGAGTGGCCTTGTGTCATTGAATCTACGCAACTGCAGAAATCTTGTTTGTCTTCCAAGCACCATCAATAAATTGAAGTCTATTGAAGATCTTAATCTTTCTGGATGCTTGAACCTCGGCAAACCTCAGGTAAATGTGGGGGTGATGGACTGTTTTGAGGAAACTGATGTGAATAGTGGGTCTGCTATAGAAATGTCATCTACCCATGATCGCAAGAAAGAAACTGATGTGAATAGTGGGACTGCAATAGAAATGTCGTCTACCCATGATCGCAAGAAAAAAGGAAGATGTCCAATCTTTCAAGGATGCAAAGTAGTTTGGCGATCTTTCAAAAAGTTCTTGTCTTCTGGATTGGTGCAAAAAGTGAATACAAAGCCAAAGAGCTTCCACTTGCCTATATCACAAAACGTGAATGCAGAGCCAAAGAGTTTCCCCTTGCCTATATCACAAAAAGTGAATGCAGAGCCAAAGAGCTTCCACTCGCCTATATCACAAAACGTGAATGCAGAGCCAAAGAGCTTCCACTCGCCTATATCACAAAACGTGAATGCAGAGCCAAAGAGCTTAGACTCGCCTATATCACAAAAAGTGAATGCAGAGCCAAAGAGTTTCCACTTGCCAATATCACAAAAAGTGAATACAGAGCCAAAGAGTTTCCCCTTGCCTATATCACAAAAAGTGAATACAGAGCCAATGAGTTTCCGCTTGCCTATATCTGGTCTGTTTAATTTAACATATCTGAATCTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGCCAGCGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGGAACAATTTTGTTCGTCTTCCTTCAGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTATACTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACAGATTAAACAAATCTTATTTCAATTTCATCAATTGCTTCAATCTAAACAGCAATCAAGGATGCAATAACATAGCATTCGAAATGCTGAAGACATTCATGTATCAGTCCTCCGGAGCAACATTCTCTGCCAGAGATTCTCCTCCAGAACAGTTATCTCCTCAAGAACAGCAACAAACTGACTCGGATCTCTTTTCTTCAGATTATGATGGGAGCTTTCTAGATAGTTTTTCAGATCTCGATAGCTCTGATGATGAGGTAACCATCGATCCTACATCTGAGGTGGGGACAAAACTTATCTCCTTGGTTAAAATGGGGTACAATGAATTGGAGGCTTCAATGGCAATAGAAAGATGCGGTGTTGACTCGTCACTTGTTGATTTGACTGATTTCATATCAGCTGCTCAAATTTCAAAGGCAGAAGATGGCCATCTTATCTACGCATTCCATGAAAAGGATATGGGACATGGAAACCAGATCATAGGGGAAGATGCTGGTACAATTCATCTCTCGAATCCAATGAATGGGTTTGGGATTCCAGCTGCAGACACAGGACCTCCTTATTTTTACTATGACAATGTGCCATTGACTCCTAAAGGAGTTTGGAGTACAATACCCCGCTTTTTGTATGACGTGAAGCCTGAGTTGGAGGTGGTGGCCTACTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1210

Amino Acids

135.96

Weight (kDa)

5.93

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 198 1.3e-54 TIR domain
TIR_2 PF13676 14 - 123 6.1e-17 TIR domain
NB-ARC PF00931 219 - 372 3.2e-18 NB-ARC domain
NACHT PF05729 222 - 318 2.2e-06 NACHT domain
WHD_ROQ1 PF23282 440 - 510 5.5e-21 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 607 - 691 8.2e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 618 - 686 1.7e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AarI CACCTGC 1 cut(s) 1661
Acc36I ACCTGC 2 cut(s) 758, 1661
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 3482
AccI GTMKAC 3 cut(s) 563, 2216, 2896
AccII CGCG 1 cut(s) 560
AccIII TCCGGA 1 cut(s) 3071
AclWI GGATC 8 cut(s) 320, 333, 664, 677, 939, 1383, 3153, 3221
AcoI YGGCCR 1 cut(s) 3385
AcsI RAATTY 6 cut(s) 117, 726, 1603, 2741, 2953, 3366
AcuI CTGAAG 5 cut(s) 1610, 1637, 2790, 3068, 3141
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 2923, 3278, 3457, 3568
AfiI CCNNNNNNNGG 5 cut(s) 652, 1421, 2672, 3412, 3482
AflIII ACRYGT 1 cut(s) 39
AjiI CACGTC 3 cut(s) 40, 322, 3592
AjnI CCWGG 2 cut(s) 982, 1540
AjuI GAANNNNNNNTTGG 4 cut(s) 2828, 2860, 3587, 3619
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 6 cut(s) 1533, 1569, 1649, 1682, 1913, 2854
AlwI GGATC 8 cut(s) 320, 333, 664, 677, 939, 1383, 3153, 3221
AlwNI CAGNNNCTG 2 cut(s) 872, 1798
Ama87I CYCGRG 2 cut(s) 708, 1871
Aor13HI TCCGGA 1 cut(s) 3071
AoxI GGCC 5 cut(s) 292, 790, 1963, 3385, 3615
ApeKI GCWGC 5 cut(s) 182, 455, 872, 3359, 3500
ApoI RAATTY 6 cut(s) 117, 726, 1603, 2741, 2953, 3366
AseI ATTAAT 1 cut(s) 1835
Asp700I GAANNNNTTC 5 cut(s) 601, 813, 1083, 1515, 3053
AspS9I GGNCC 3 cut(s) 292, 980, 3512
AsuHPI GGTGA 5 cut(s) 115, 213, 2110, 2732, 2776
AsuII TTCGAA 1 cut(s) 3039
AvaI CYCGRG 2 cut(s) 708, 1871
AvaII GGWCC 2 cut(s) 980, 3512
AxyI CCTNAGG 1 cut(s) 2082
BalI TGGCCA 1 cut(s) 3387
BamHI GGATCC 2 cut(s) 325, 669
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 1 cut(s) 1190
BbsI GAAGAC 6 cut(s) 304, 1578, 2000, 2292, 2792, 3056
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 5 cut(s) 169, 442, 859, 3346, 3487
BceAI ACGGC 1 cut(s) 1970
BciT130I CCWGG 2 cut(s) 984, 1542
BclI TGATCA 2 cut(s) 721, 1315
BcoDI GTCTC 6 cut(s) 1533, 1569, 1649, 1682, 1913, 2854
BfaI CTAG 6 cut(s) 198, 794, 990, 1394, 2900, 3179
BfmI CTRYAG 4 cut(s) 1790, 1990, 2142, 3501
BfuAI ACCTGC 2 cut(s) 758, 1661
BglII AGATCT 5 cut(s) 200, 1445, 1696, 2044, 3193
BisI GCNGC 6 cut(s) 183, 341, 456, 873, 3360, 3501
BlsI GCNGC 6 cut(s) 184, 342, 457, 874, 3361, 3502
Bme1390I CCNGG 2 cut(s) 984, 1542
Bme18I GGWCC 2 cut(s) 980, 3512
BmeT110I CYCGRG 2 cut(s) 708, 1871
BmgBI CACGTC 3 cut(s) 40, 322, 3592
BmgT120I GGNCC 3 cut(s) 292, 980, 3512
BmiI GGNNCC 3 cut(s) 327, 344, 671
BmrFI CCNGG 2 cut(s) 984, 1542
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 6 cut(s) 304, 1578, 2000, 2292, 2792, 3056
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 3087
Bpu10I CCTNAGC 1 cut(s) 1170
Bpu14I TTCGAA 1 cut(s) 3039
BpuEI CTTGAG 4 cut(s) 167, 1706, 2852, 3105
Bsa29I ATCGAT 1 cut(s) 3225
BsaBI GATNNNNATC 4 cut(s) 930, 1374, 2049, 3387
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 1569, 1649
BsaJI CCNNGG 5 cut(s) 673, 983, 1738, 2071, 3261
BsaWI WCCGGW 1 cut(s) 3071
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 3499, 3529
Bsc4I CCNNNNNNNGG 5 cut(s) 652, 1421, 2672, 3412, 3482
Bse1I ACTGG 2 cut(s) 84, 977
Bse21I CCTNAGG 1 cut(s) 2082
Bse8I GATNNNNATC 4 cut(s) 930, 1374, 2049, 3387
BseAI TCCGGA 1 cut(s) 3071
BseBI CCWGG 2 cut(s) 984, 1542
BseCI ATCGAT 1 cut(s) 3225
BseDI CCNNGG 5 cut(s) 673, 983, 1738, 2071, 3261
BseGI GGATG 9 cut(s) 139, 259, 862, 1141, 1485, 1712, 2066, 2267, 3026
BseJI GATNNNNATC 4 cut(s) 930, 1374, 2049, 3387
BseLI CCNNNNNNNGG 5 cut(s) 652, 1421, 2672, 3412, 3482
BseMII CTCAG 7 cut(s) 101, 456, 1949, 2096, 2693, 3228, 3591
BseNI ACTGG 2 cut(s) 84, 977
BseRI GAGGAG 2 cut(s) 3090, 3108
BseXI GCAGC 5 cut(s) 169, 442, 859, 3346, 3487
BseYI CCCAGC 2 cut(s) 486, 1506
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 5 cut(s) 294, 792, 1965, 3387, 3617
BshNI GGYRCC 1 cut(s) 342
BshVI ATCGAT 1 cut(s) 3225
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 2 cut(s) 708, 1871
BsiSI CCGG 1 cut(s) 3072
BslFI GGGAC 6 cut(s) 366, 1000, 1104, 2209, 3259, 3435
BslI CCNNNNNNNGG 5 cut(s) 652, 1421, 2672, 3412, 3482
BsmAI GTCTC 6 cut(s) 1533, 1569, 1649, 1682, 1913, 2854
BsmBI CGTCTC 1 cut(s) 1682
BsmFI GGGAC 6 cut(s) 366, 1000, 1104, 2209, 3259, 3435
BsmI GAATGC 8 cut(s) 609, 2374, 2419, 2464, 2509, 2554, 3035, 3401
BsnI GGCC 5 cut(s) 294, 792, 1965, 3387, 3617
Bso31I GGTCTC 2 cut(s) 1569, 1649
BsoBI CYCGRG 2 cut(s) 708, 1871
Bsp119I TTCGAA 1 cut(s) 3039
Bsp1286I GDGCHC 1 cut(s) 366
Bsp13I TCCGGA 1 cut(s) 3071
Bsp19I CCATGG 1 cut(s) 673
BspANI GGCC 5 cut(s) 294, 792, 1965, 3387, 3617
BspCNI CTCAG 7 cut(s) 102, 457, 1950, 2095, 2694, 3229, 3592
BspDI ATCGAT 1 cut(s) 3225
BspEI TCCGGA 1 cut(s) 3071
BspFNI CGCG 1 cut(s) 560
BspHI TCATGA 2 cut(s) 613, 1567
BspLI GGNNCC 3 cut(s) 327, 344, 671
BspMAI CTGCAG 3 cut(s) 1794, 1994, 3505
BspMI ACCTGC 2 cut(s) 758, 1661
BspPI GGATC 8 cut(s) 320, 333, 664, 677, 939, 1383, 3153, 3221
BspT104I TTCGAA 1 cut(s) 3039
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 2 cut(s) 1569, 1649
BsrI ACTGG 2 cut(s) 84, 977
BssECI CCNNGG 5 cut(s) 673, 983, 1738, 2071, 3261
BssNAI GTATAC 2 cut(s) 564, 2897
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1190
BssT1I CCWWGG 3 cut(s) 673, 1738, 3261
Bst1107I GTATAC 2 cut(s) 564, 2897
Bst2BI CACGAG 1 cut(s) 1190
Bst2UI CCWGG 2 cut(s) 984, 1542
Bst4CI ACNGT 5 cut(s) 1073, 1476, 1527, 2108, 3111
Bst6I CTCTTC 2 cut(s) 19, 807
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 1489, 1798
BstBI TTCGAA 1 cut(s) 3039
BstC8I GCNNGC 5 cut(s) 680, 1351, 1406, 2663, 2737
BstDSI CCRYGG 1 cut(s) 673
BstEII GGTNACC 2 cut(s) 2764, 3217
BstF5I GGATG 9 cut(s) 139, 259, 862, 1141, 1485, 1712, 2066, 2267, 3026
BstFNI CGCG 1 cut(s) 560
BstMAI GTCTC 6 cut(s) 1533, 1569, 1649, 1682, 1913, 2854
BstMWI GCNNNNNNNGC 6 cut(s) 452, 684, 1489, 1798, 2827, 3299
BstNI CCWGG 2 cut(s) 984, 1542
BstNSI RCATGY 1 cut(s) 682
BstPAI GACNNNNGTC 1 cut(s) 467
BstPI GGTNACC 2 cut(s) 2764, 3217
BstSCI CCNGG 2 cut(s) 982, 1540
BstSFI CTRYAG 4 cut(s) 1790, 1990, 2142, 3501
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 5 cut(s) 169, 442, 859, 3346, 3487
BstV2I GAAGAC 6 cut(s) 304, 1578, 2000, 2292, 2792, 3056
BstX2I RGATCY 8 cut(s) 200, 325, 669, 1445, 1696, 2044, 3145, 3193
BstYI RGATCY 8 cut(s) 200, 325, 669, 1445, 1696, 2044, 3145, 3193
BstZ17I GTATAC 2 cut(s) 564, 2897
Bsu15I ATCGAT 1 cut(s) 3225
Bsu36I CCTNAGG 1 cut(s) 2082
BsuRI GGCC 5 cut(s) 294, 792, 1965, 3387, 3617
BsuTUI ATCGAT 1 cut(s) 3225
BtgI CCRYGG 1 cut(s) 673
BtrI CACGTC 3 cut(s) 40, 322, 3592
BtsCI GGATG 9 cut(s) 139, 259, 862, 1141, 1485, 1712, 2066, 2267, 3026
BtsIMutI CAGTG 1 cut(s) 2927
BveI ACCTGC 2 cut(s) 758, 1661
Cac8I GCNNGC 5 cut(s) 680, 1351, 1406, 2663, 2737
CaiI CAGNNNCTG 2 cut(s) 872, 1798
CciI TCATGA 2 cut(s) 613, 1567
Cfr13I GGNCC 3 cut(s) 292, 980, 3512
ClaI ATCGAT 1 cut(s) 3225
Csp6I GTAC 4 cut(s) 2922, 3277, 3456, 3567
CviQI GTAC 4 cut(s) 2922, 3277, 3456, 3567
EaeI YGGCCR 1 cut(s) 3385
Eam1104I CTCTTC 2 cut(s) 19, 807
EarI CTCTTC 2 cut(s) 19, 807
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 3 cut(s) 673, 1738, 3261
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 2 cut(s) 1569, 1649
Eco47I GGWCC 2 cut(s) 980, 3512
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 5 cut(s) 1610, 1637, 2790, 3068, 3141
Eco81I CCTNAGG 1 cut(s) 2082
Eco88I CYCGRG 2 cut(s) 708, 1871
Eco91I GGTNACC 2 cut(s) 2764, 3217
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 3512
EcoO65I GGTNACC 2 cut(s) 2764, 3217
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 982, 1540
EcoT14I CCWWGG 3 cut(s) 673, 1738, 3261
EcoT22I ATGCAT 3 cut(s) 281, 1485, 2950
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 3 cut(s) 673, 1738, 3261
Esp3I CGTCTC 1 cut(s) 1682
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 6 cut(s) 366, 1000, 1104, 2209, 3259, 3435
FauI CCCGC 5 cut(s) 50, 77, 614, 675, 3584
FauNDI CATATG 2 cut(s) 508, 635
FbaI TGATCA 2 cut(s) 721, 1315
FblI GTMKAC 3 cut(s) 563, 2216, 2896
Fnu4HI GCNGC 6 cut(s) 183, 341, 456, 873, 3360, 3501
FokI GGATG 9 cut(s) 146, 266, 869, 1128, 1492, 1719, 2073, 2274, 3033
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 6 cut(s) 183, 341, 456, 873, 3360, 3501
FspBI CTAG 6 cut(s) 198, 794, 990, 1394, 2900, 3179
GluI GCNGC 6 cut(s) 183, 341, 456, 873, 3360, 3501
GsaI CCCAGC 2 cut(s) 490, 1510
GsuI CTGGAG 1 cut(s) 3087
HaeIII GGCC 5 cut(s) 294, 792, 1965, 3387, 3617
HapII CCGG 1 cut(s) 3072
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 9, 939, 3322
HindII GTYRAC 3 cut(s) 9, 939, 3322
HindIII AAGCTT 2 cut(s) 1754, 2828
HpaII CCGG 1 cut(s) 3072
HphI GGTGA 5 cut(s) 115, 213, 2110, 2732, 2776
Hpy166II GTNNAC 7 cut(s) 9, 564, 939, 1523, 2217, 2897, 3322
Hpy8I GTNNAC 7 cut(s) 9, 564, 939, 1523, 2217, 2897, 3322
Hpy99I CGWCG 2 cut(s) 41, 323
HpyAV CCTTC 8 cut(s) 339, 656, 1096, 1360, 1697, 2717, 2814, 2891
HpyCH4III ACNGT 5 cut(s) 1073, 1476, 1527, 2108, 3111
HpyCH4IV ACGT 8 cut(s) 39, 321, 1549, 1691, 2364, 2454, 2499, 3591
HpyF10VI GCNNNNNNNGC 6 cut(s) 452, 684, 1489, 1798, 2827, 3299
HpySE526I ACGT 8 cut(s) 39, 321, 1549, 1691, 2364, 2454, 2499, 3591
Hsp92I GRCGYC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 3071
Ksp22I TGATCA 2 cut(s) 721, 1315
LmnI GCTCC 4 cut(s) 869, 2726, 3074, 3171
Lsp1109I GCAGC 5 cut(s) 169, 442, 859, 3346, 3487
MaeI CTAG 6 cut(s) 198, 794, 990, 1394, 2900, 3179
MaeII ACGT 8 cut(s) 39, 321, 1549, 1691, 2364, 2454, 2499, 3591
MaeIII GTNAC 5 cut(s) 1381, 2747, 2764, 3217, 3327
MfeI CAATTG 3 cut(s) 186, 1947, 2992
MflI RGATCY 8 cut(s) 200, 325, 669, 1445, 1696, 2044, 3145, 3193
MhlI GDGCHC 1 cut(s) 366
MlsI TGGCCA 1 cut(s) 3387
MluNI TGGCCA 1 cut(s) 3387
MlyI GAGTC 5 cut(s) 1804, 2519, 3134, 3317, 3541
MmeI TCCRAC 3 cut(s) 1488, 1861, 3585
Mox20I TGGCCA 1 cut(s) 3387
Mph1103I ATGCAT 3 cut(s) 281, 1485, 2950
MroI TCCGGA 1 cut(s) 3071
MroXI GAANNNNTTC 5 cut(s) 601, 813, 1083, 1515, 3053
MscI TGGCCA 1 cut(s) 3387
Msp20I TGGCCA 1 cut(s) 3387
MspA1I CMGCKG 3 cut(s) 57, 3359, 3500
MspI CCGG 1 cut(s) 3072
MspR9I CCNGG 2 cut(s) 984, 1542
MunI CAATTG 3 cut(s) 186, 1947, 2992
Mva1269I GAATGC 8 cut(s) 609, 2374, 2419, 2464, 2509, 2554, 3035, 3401
MvaI CCWGG 2 cut(s) 984, 1542
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 6 cut(s) 452, 684, 1489, 1798, 2827, 3299
NcoI CCATGG 1 cut(s) 673
NdeI CATATG 2 cut(s) 508, 635
NlaIV GGNNCC 3 cut(s) 327, 344, 671
NmeAIII GCCGAG 1 cut(s) 2052
NmuCI GTSAC 3 cut(s) 1381, 2764, 3327
NsiI ATGCAT 3 cut(s) 281, 1485, 2950
NspI RCATGY 1 cut(s) 682
NspV TTCGAA 1 cut(s) 3039
PaeI GCATGC 1 cut(s) 682
PaeR7I CTCGAG 1 cut(s) 708
PagI TCATGA 2 cut(s) 613, 1567
PaqCI CACCTGC 1 cut(s) 1661
PctI GAATGC 8 cut(s) 609, 2374, 2419, 2464, 2509, 2554, 3035, 3401
PdmI GAANNNNTTC 5 cut(s) 601, 813, 1083, 1515, 3053
PflMI CCANNNNNTGG 1 cut(s) 3482
PkrI GCNGC 6 cut(s) 184, 342, 457, 874, 3361, 3502
PleI GAGTC 5 cut(s) 1803, 2519, 3134, 3317, 3541
PpsI GAGTC 5 cut(s) 1803, 2519, 3134, 3317, 3541
PpuMI RGGWCCY 1 cut(s) 3512
PshAI GACNNNNGTC 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 1835
PsiI TTATAA 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 3512
Psp6I CCWGG 2 cut(s) 982, 1540
PspEI GGTNACC 2 cut(s) 2764, 3217
PspFI CCCAGC 2 cut(s) 486, 1506
PspGI CCWGG 2 cut(s) 982, 1540
PspN4I GGNNCC 3 cut(s) 327, 344, 671
PspPI GGNCC 3 cut(s) 292, 980, 3512
PspPPI RGGWCCY 1 cut(s) 3512
PspXI VCTCGAGB 1 cut(s) 708
PstI CTGCAG 3 cut(s) 1794, 1994, 3505
PstNI CAGNNNCTG 2 cut(s) 872, 1798
PsuI RGATCY 8 cut(s) 200, 325, 669, 1445, 1696, 2044, 3145, 3193
PvuII CAGCTG 2 cut(s) 3359, 3500
RsaI GTAC 4 cut(s) 2923, 3278, 3457, 3568
RsaNI GTAC 4 cut(s) 2922, 3277, 3456, 3567
SacI GAGCTC 1 cut(s) 366
SatI GCNGC 6 cut(s) 183, 341, 456, 873, 3360, 3501
Sau96I GGNCC 3 cut(s) 292, 980, 3512
SchI GAGTC 5 cut(s) 1804, 2519, 3134, 3317, 3541
ScrFI CCNGG 2 cut(s) 984, 1542
SduI GDGCHC 1 cut(s) 366
SfcI CTRYAG 4 cut(s) 1790, 1990, 2142, 3501
Sfr274I CTCGAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 3039
SinI GGWCC 2 cut(s) 980, 3512
SlaI CTCGAG 1 cut(s) 708
SmlI CTYRAG 5 cut(s) 146, 708, 1685, 2831, 3120
SmoI CTYRAG 5 cut(s) 146, 708, 1685, 2831, 3120
SphI GCATGC 1 cut(s) 682
SspI AATATT 2 cut(s) 503, 1335
SspMI CTAG 6 cut(s) 198, 794, 990, 1394, 2900, 3179
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 982, 1540
StyI CCWWGG 3 cut(s) 673, 1738, 3261
TaaI ACNGT 5 cut(s) 1073, 1476, 1527, 2108, 3111
TaiI ACGT 8 cut(s) 42, 324, 1552, 1694, 2367, 2457, 2502, 3594
TaqI TCGA 5 cut(s) 709, 3039, 3198, 3225, 3470
TaqII GACCGA 2 cut(s) 153, 759
TatI WGTACW 2 cut(s) 2921, 3566
TauI GCSGC 1 cut(s) 343
TscAI CASTG 1 cut(s) 2934
TseFI GTSAC 3 cut(s) 1381, 2764, 3327
TseI GCWGC 5 cut(s) 182, 455, 872, 3359, 3500
Tsp45I GTSAC 3 cut(s) 1381, 2764, 3327
TspGWI ACGGA 2 cut(s) 1134, 1170
TspRI CASTG 1 cut(s) 2934
Van91I CCANNNNNTGG 1 cut(s) 3482
VpaK11BI GGWCC 2 cut(s) 980, 3512
VspI ATTAAT 1 cut(s) 1835
XapI RAATTY 6 cut(s) 117, 726, 1603, 2741, 2953, 3366
XbaI TCTAGA 2 cut(s) 197, 3178
XceI RCATGY 1 cut(s) 682
XcmI CCANNNNNNNNNTGG 2 cut(s) 829, 1736
XhoI CTCGAG 1 cut(s) 708
XmiI GTMKAC 3 cut(s) 563, 2216, 2896
XmnI GAANNNNTTC 5 cut(s) 601, 813, 1083, 1515, 3053
XspI CTAG 6 cut(s) 198, 794, 990, 1394, 2900, 3179
Zsp2I ATGCAT 3 cut(s) 281, 1485, 2950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.