Rorug02G0096500

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000105
Physical Location & Seq
Forward (+)
7932386 .. 7937596
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0096500.1

Sequence Viewer

Length: 1653 bp
ATGGCTGCCGCCACTTCGGCCGCGTCTCCTCTCTGCACGTGGCTGGTCGCCGCTTGCATGTCGGTCACGTGCGACGGGGACTACTCCGCCCGGCCGTCACGTGCCAAGTTGGGTGGTGGCCGGAGACGGAGGCTGGCGAAATGTAGTGGCAGCTACTGCTTAAGTAGTAGGGGCGGATCCAGCATTCAGGGCCTGATGACTTCTTGTTTGGCGTTTGAGCCTTGCGATGAGTACTATAGCTCTCAGGGTTTATCTTCTTTGGGCTCAAATGGGCTGTCCTCGCTCTTTGGATCCAAAACTGGGTCTTTGAATCGAAGCAGGAGGCGCTTTAATGCCCATTCTGGGGAAACCATGGCTGTTGCTGTGCAACCTACTGAAGAATTAACAAAGCAAAAGAAACCTATAACAAGACAGAGGCGAGTGGTTGTGACAGGAATGAGTGTGGTGACCCCACTTGGTCATGATGCTGATGTTTTCTACAATAATCTGCTTGAGGGTGTTAGTGGCATTAGTGAGATAGAAGCTTTTGATTGTTCCCCATTTCCTACGAAAATTGGTGGAGAGATCAAGTCCTTTTCCACTGATGGATGGGTAGCACCAAAGTTTTCCAGAAGAATGGATAAATTCATGCTTTACTTGCTTACTGCTGGAAAGAAAGCCTTGGCAGATGGTGGAATTACAGAAGAAGTCATGGAGAAAATTGATAAAACTAAATGTGGGGTGTTGATCGGTTCTGCAATGGGTGGAATGAAGATCTTCAATGATGCAATTGAAGCTTTACGGGTTTCATATAAGAAGATGAATCCTTTCTGTGTGCCTTTCGCAACTACAAATATGGGTTCTGCCATGCTCGCAATGGATCTGGGTTGGATGGGCCCAAATTATTCAATCTCTACTGCTTGTGCTACAAGCAACTTCTGCATTTTGAATTCAGCAAATCATATCATTAGAGGTGAAGCTGACATTATGCTTTCTGGTGGTTCAGATTCAGTAATGATACCTATTGGCTTGGGAGGCTTTGTGGCATGCAGAGCACTTTCACAAAGGAACAGTGATCCAACTAAAGCATCACGACCTTGGGATACTAATCGTGATGGATTTGTTATGGGGGAAGGAGCTGGAGTGTTGCTTCTAGAAGAGTTAGAACATGCTAAGAAAAGAGGTGCAACCATCTATGCAGAGTTTCTTGGTGGAAGCTTCACATGTGATGCTTACCACATGACTGAGCCACGCCCTGATGGGGCTGGAGTTATTCAATGCATAGAGAAGGCATTAGCTCAGTCTGGCGTATCTAAGGAAGACGTCAATTACATTAATGCACATGCAACATCCACACCAGCTGGAGACCTAAAAGAGTATCACGCTCTGATGCATTGTTTTGGCCAGAATCCTGAGTTGAGAGTCAACTCTACAAAATCCATGATTGGTCACCTGCTAGGAGCAGCTGGCGCAGTCGAGGCTGTTGCAGCAGTACAGGCAATACGAACTGGATGGGTTCATCCAAATATTAATCTGGAAGACCCAGATGAGGGTGTGGATATGAAAGTGCTTGTAGGCCCAAAGAAAGAAAGACTGGACATTAAGGTGGCATTGTCTAATTCGTTTGGGTTTGGCGGCCACAACTCATCAGTTTTGTTTGCTCCTTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

550

Amino Acids

58.67

Weight (kDa)

8.24

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 139 - 384 7e-57 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 392 - 506 2.9e-36 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1440
AatII GACGTC 1 cut(s) 1305
Acc36I ACCTGC 1 cut(s) 1440
AccII CGCG 1 cut(s) 23
AciI CCGC 6 cut(s) 9, 21, 51, 87, 174, 1614
AclWI GGATC 6 cut(s) 171, 184, 285, 298, 867, 1049
AcoI YGGCCR 5 cut(s) 18, 92, 118, 1381, 1615
AcsI RAATTY 2 cut(s) 623, 928
AcuI CTGAAG 1 cut(s) 396
AcvI CACGTG 3 cut(s) 39, 69, 101
AcyI GRCGYC 1 cut(s) 1302
AfaI GTAC 2 cut(s) 233, 1473
AfiI CCNNNNNNNGG 6 cut(s) 300, 342, 343, 1240, 1528, 1529
AflII CTTAAG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 1202
AgsI TTSAA 6 cut(s) 310, 760, 773, 888, 928, 1256
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 3 cut(s) 30, 118, 1338
AlwI GGATC 6 cut(s) 171, 184, 285, 298, 867, 1049
AlwNI CAGNNNCTG 2 cut(s) 156, 193
AoxI GGCC 8 cut(s) 18, 92, 118, 190, 874, 1381, 1555, 1615
ApaI GGGCCC 1 cut(s) 878
ApeKI GCWGC 4 cut(s) 5, 150, 1442, 1466
ApoI RAATTY 2 cut(s) 623, 928
ArsI GACNNNNNNTTYG 4 cut(s) 190, 222, 260, 292
AseI ATTAAT 2 cut(s) 1314, 1509
Asp700I GAANNNNTTC 2 cut(s) 755, 806
AspLEI GCGC 2 cut(s) 327, 1451
AspS9I GGNCC 4 cut(s) 190, 874, 875, 1556
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 457, 965, 1421
BaeGI GKGCMC 1 cut(s) 878
BalI TGGCCA 1 cut(s) 1383
BamHI GGATCC 2 cut(s) 176, 290
BanII GRGCYC 2 cut(s) 266, 878
BbrPI CACGTG 3 cut(s) 39, 69, 101
BbsI GAAGAC 2 cut(s) 1305, 1524
Bbv12I GWGCWC 1 cut(s) 1036
BbvI GCAGC 3 cut(s) 162, 1454, 1478
BccI CCATC 8 cut(s) 578, 582, 662, 865, 1088, 1178, 1232, 1485
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 1445, 1479
BciVI GTATCC 1 cut(s) 1075
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 30, 118, 1338
BfaI CTAG 2 cut(s) 1133, 1436
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 1440
BfuI GTATCC 1 cut(s) 1075
BglI GCCNNNNNGGC 1 cut(s) 17
BglII AGATCT 1 cut(s) 753
BisI GCNGC 8 cut(s) 6, 9, 21, 51, 151, 1443, 1467, 1615
BlsI GCNGC 8 cut(s) 7, 10, 22, 52, 152, 1444, 1468, 1616
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 4 cut(s) 190, 874, 875, 1556
BmiI GGNNCC 3 cut(s) 178, 292, 876
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 5 cut(s) 454, 754, 1076, 1198, 1359
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 2 cut(s) 1305, 1524
BpmI CTGGAG 3 cut(s) 1140, 1266, 1362
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 91
BsaAI YACGTR 3 cut(s) 39, 69, 101
BsaBI GATNNNNATC 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 1302
BsaI GGTCTC 1 cut(s) 1338
BsaJI CCNNGG 3 cut(s) 351, 660, 1076
BsaXI ACNNNNNCTCC 4 cut(s) 1005, 1035, 1107, 1137
Bsc4I CCNNNNNNNGG 6 cut(s) 300, 342, 343, 1240, 1528, 1529
Bse1I ACTGG 3 cut(s) 304, 1492, 1578
Bse3DI GCAATG 2 cut(s) 744, 861
Bse8I GATNNNNATC 1 cut(s) 1086
BseDI CCNNGG 3 cut(s) 351, 660, 1076
BseGI GGATG 5 cut(s) 593, 876, 1328, 1496, 1498
BseJI GATNNNNATC 1 cut(s) 1086
BseLI CCNNNNNNNGG 6 cut(s) 300, 342, 343, 1240, 1528, 1529
BseMI GCAATG 2 cut(s) 744, 861
BseMII CTCAG 4 cut(s) 257, 1215, 1292, 1383
BseNI ACTGG 3 cut(s) 304, 1492, 1578
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 878
BseX3I CGGCCG 2 cut(s) 18, 92
BseXI GCAGC 3 cut(s) 162, 1454, 1478
BsgI GTGCAG 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 2 cut(s) 21, 95
BshFI GGCC 8 cut(s) 20, 94, 120, 192, 876, 1383, 1557, 1617
BsiEI CGRYCG 2 cut(s) 21, 95
BsiHKAI GWGCWC 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 91, 121
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 6 cut(s) 300, 342, 343, 1240, 1528, 1529
BsmAI GTCTC 3 cut(s) 30, 118, 1338
BsmBI CGTCTC 2 cut(s) 30, 118
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 8 cut(s) 20, 94, 120, 192, 876, 1383, 1557, 1617
Bso31I GGTCTC 1 cut(s) 1338
Bsp120I GGGCCC 1 cut(s) 874
Bsp1286I GDGCHC 3 cut(s) 266, 878, 1036
Bsp143I GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 6 cut(s) 9, 21, 51, 87, 174, 1614
BspANI GGCC 8 cut(s) 20, 94, 120, 192, 876, 1383, 1557, 1617
BspCNI CTCAG 4 cut(s) 256, 1216, 1291, 1384
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 178, 292, 876
BspMI ACCTGC 1 cut(s) 1440
BspPI GGATC 6 cut(s) 171, 184, 285, 298, 867, 1049
BspTI CTTAAG 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 1338
BsrDI GCAATG 2 cut(s) 744, 861
BsrI ACTGG 3 cut(s) 304, 1492, 1578
BssECI CCNNGG 3 cut(s) 351, 660, 1076
BssMI GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
BssNI GRCGYC 1 cut(s) 1302
BssT1I CCWWGG 3 cut(s) 351, 660, 1076
Bst4CI ACNGT 1 cut(s) 1052
Bst6I CTCTTC 1 cut(s) 1131
BstACI GRCGYC 1 cut(s) 1302
BstAFI CTTAAG 1 cut(s) 160
BstAPI GCANNNNNTGC 2 cut(s) 156, 918
BstBAI YACGTR 3 cut(s) 39, 69, 101
BstC8I GCNNGC 5 cut(s) 55, 135, 852, 1027, 1447
BstDEI CTNAG 6 cut(s) 243, 1152, 1224, 1278, 1293, 1392
BstDSI CCRYGG 1 cut(s) 351
BstEII GGTNACC 2 cut(s) 445, 1427
BstF5I GGATG 5 cut(s) 593, 876, 1328, 1496, 1498
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 327, 1451
BstKTI GATC 7 cut(s) 179, 293, 567, 729, 756, 862, 1057
BstMAI GTCTC 3 cut(s) 30, 118, 1338
BstMBI GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
BstMCI CGRYCG 2 cut(s) 21, 95
BstNSI RCATGY 5 cut(s) 61, 1029, 1151, 1206, 1325
BstPI GGTNACC 2 cut(s) 445, 1427
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 878
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 162, 1454, 1478
BstV2I GAAGAC 2 cut(s) 1305, 1524
BstX2I RGATCY 4 cut(s) 176, 290, 753, 859
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 4 cut(s) 176, 290, 753, 859
BstZI CGGCCG 2 cut(s) 18, 92
BsuI GTATCC 1 cut(s) 1075
BsuRI GGCC 8 cut(s) 20, 94, 120, 192, 876, 1383, 1557, 1617
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 5 cut(s) 593, 876, 1328, 1496, 1498
BtsIMutI CAGTG 2 cut(s) 579, 1057
BveI ACCTGC 1 cut(s) 1440
Cac8I GCNNGC 5 cut(s) 55, 135, 852, 1027, 1447
CaiI CAGNNNCTG 2 cut(s) 156, 193
CciI TCATGA 1 cut(s) 460
CfoI GCGC 2 cut(s) 327, 1451
Cfr13I GGNCC 4 cut(s) 190, 874, 875, 1556
CseI GACGC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 232, 1472
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviQI GTAC 2 cut(s) 232, 1472
DdeI CTNAG 6 cut(s) 243, 1152, 1224, 1278, 1293, 1392
DpnI GATC 7 cut(s) 178, 292, 566, 728, 755, 861, 1056
DpnII GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
EaeI YGGCCR 5 cut(s) 18, 92, 118, 1381, 1615
EagI CGGCCG 2 cut(s) 18, 92
Eam1104I CTCTTC 1 cut(s) 1131
EarI CTCTTC 1 cut(s) 1131
EciI GGCGGA 2 cut(s) 76, 189
EclXI CGGCCG 2 cut(s) 18, 92
Eco130I CCWWGG 3 cut(s) 351, 660, 1076
Eco24I GRGCYC 2 cut(s) 266, 878
Eco31I GGTCTC 1 cut(s) 1338
Eco52I CGGCCG 2 cut(s) 18, 92
Eco57I CTGAAG 1 cut(s) 396
Eco72I CACGTG 3 cut(s) 39, 69, 101
Eco91I GGTNACC 2 cut(s) 445, 1427
EcoO109I RGGNCCY 1 cut(s) 190
EcoO65I GGTNACC 2 cut(s) 445, 1427
EcoRI GAATTC 1 cut(s) 928
EcoT14I CCWWGG 3 cut(s) 351, 660, 1076
EcoT22I ATGCAT 2 cut(s) 1262, 1374
EcoT38I GRGCYC 2 cut(s) 266, 878
ErhI CCWWGG 3 cut(s) 351, 660, 1076
Esp3I CGTCTC 2 cut(s) 30, 118
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 92
Fnu4HI GCNGC 8 cut(s) 6, 9, 21, 51, 151, 1443, 1467, 1615
FokI GGATG 5 cut(s) 600, 883, 1315, 1485, 1503
FriOI GRGCYC 2 cut(s) 266, 878
Fsp4HI GCNGC 8 cut(s) 6, 9, 21, 51, 151, 1443, 1467, 1615
FspBI CTAG 2 cut(s) 1133, 1436
GlaI GCGC 2 cut(s) 326, 1450
GluI GCNGC 8 cut(s) 6, 9, 21, 51, 151, 1443, 1467, 1615
GsuI CTGGAG 3 cut(s) 1140, 1266, 1362
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 8 cut(s) 20, 94, 120, 192, 876, 1383, 1557, 1617
HapII CCGG 2 cut(s) 91, 121
HgaI GACGC 1 cut(s) 12
HhaI GCGC 2 cut(s) 327, 1451
Hin1I GRCGYC 1 cut(s) 1302
Hin6I GCGC 2 cut(s) 325, 1449
HinP1I GCGC 2 cut(s) 325, 1449
HincII GTYRAC 1 cut(s) 1405
HindII GTYRAC 1 cut(s) 1405
HindIII AAGCTT 3 cut(s) 522, 774, 1195
HinfI GANTC 5 cut(s) 310, 802, 986, 1387, 1401
HpaII CCGG 2 cut(s) 91, 121
HphI GGTGA 3 cut(s) 457, 965, 1421
Hpy166II GTNNAC 1 cut(s) 1405
Hpy188I TCNGA 2 cut(s) 985, 1368
Hpy188III TCNNGA 7 cut(s) 461, 609, 1071, 1091, 1133, 1391, 1514
Hpy8I GTNNAC 1 cut(s) 1405
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 1106, 1261
HpyCH4III ACNGT 1 cut(s) 1052
HpyCH4IV ACGT 4 cut(s) 38, 68, 100, 1302
HpyF3I CTNAG 6 cut(s) 243, 1152, 1224, 1278, 1293, 1392
HpySE526I ACGT 4 cut(s) 38, 68, 100, 1302
Hsp92I GRCGYC 1 cut(s) 1302
HspAI GCGC 2 cut(s) 325, 1449
Kzo9I GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
LmnI GCTCC 3 cut(s) 1115, 1439, 1645
Lsp1109I GCAGC 3 cut(s) 162, 1454, 1478
LweI GCATC 5 cut(s) 454, 754, 1076, 1198, 1359
MaeI CTAG 2 cut(s) 1133, 1436
MaeII ACGT 4 cut(s) 38, 68, 100, 1302
MaeIII GTNAC 5 cut(s) 64, 96, 427, 445, 1427
MalI GATC 7 cut(s) 178, 292, 566, 728, 755, 861, 1056
MboI GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 4 cut(s) 176, 290, 753, 859
MhlI GDGCHC 3 cut(s) 266, 878, 1036
MlsI TGGCCA 1 cut(s) 1383
MluNI TGGCCA 1 cut(s) 1383
MlyI GAGTC 1 cut(s) 1410
MmeI TCCRAC 2 cut(s) 848, 1082
Mox20I TGGCCA 1 cut(s) 1383
Mph1103I ATGCAT 2 cut(s) 1262, 1374
MroXI GAANNNNTTC 2 cut(s) 755, 806
MscI TGGCCA 1 cut(s) 1383
MseI TTAA 6 cut(s) 161, 330, 383, 1314, 1509, 1581
MslI CAYNNNNRTG 1 cut(s) 1583
Msp20I TGGCCA 1 cut(s) 1383
MspA1I CMGCKG 2 cut(s) 1340, 1445
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 2 cut(s) 91, 121
MspR9I CCNGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 768
Mva1269I GAATGC 1 cut(s) 183
MvnI CGCG 1 cut(s) 23
NciI CCSGG 1 cut(s) 91
NcoI CCATGG 1 cut(s) 351
NdeII GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
NlaIV GGNNCC 3 cut(s) 178, 292, 876
NmuCI GTSAC 5 cut(s) 64, 96, 427, 445, 1427
NsiI ATGCAT 2 cut(s) 1262, 1374
NspI RCATGY 5 cut(s) 61, 1029, 1151, 1206, 1325
PaeI GCATGC 1 cut(s) 1029
PagI TCATGA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 1440
PciI ACATGT 1 cut(s) 1202
PctI GAATGC 1 cut(s) 183
PdmI GAANNNNTTC 2 cut(s) 755, 806
PfeI GAWTC 4 cut(s) 310, 802, 986, 1387
PkrI GCNGC 8 cut(s) 7, 10, 22, 52, 152, 1444, 1468, 1616
PleI GAGTC 1 cut(s) 1409
PmaCI CACGTG 3 cut(s) 39, 69, 101
PmlI CACGTG 3 cut(s) 39, 69, 101
PpsI GAGTC 1 cut(s) 1409
Ppu21I YACGTR 3 cut(s) 39, 69, 101
PscI ACATGT 1 cut(s) 1202
PshBI ATTAAT 2 cut(s) 1314, 1509
PspCI CACGTG 3 cut(s) 39, 69, 101
PspEI GGTNACC 2 cut(s) 445, 1427
PspN4I GGNNCC 3 cut(s) 178, 292, 876
PspOMI GGGCCC 1 cut(s) 874
PspPI GGNCC 4 cut(s) 190, 874, 875, 1556
PstNI CAGNNNCTG 2 cut(s) 156, 193
PsuI RGATCY 4 cut(s) 176, 290, 753, 859
PvuII CAGCTG 2 cut(s) 1340, 1445
RsaI GTAC 2 cut(s) 233, 1473
RsaNI GTAC 2 cut(s) 232, 1472
RseI CAYNNNNRTG 1 cut(s) 1583
SaqAI TTAA 6 cut(s) 161, 330, 383, 1314, 1509, 1581
SatI GCNGC 8 cut(s) 6, 9, 21, 51, 151, 1443, 1467, 1615
Sau3AI GATC 7 cut(s) 176, 290, 564, 726, 753, 859, 1054
Sau96I GGNCC 4 cut(s) 190, 874, 875, 1556
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 1410
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 3 cut(s) 266, 878, 1036
SfaNI GCATC 5 cut(s) 454, 754, 1076, 1198, 1359
SfcI CTRYAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 1583
SmlI CTYRAG 2 cut(s) 160, 491
SmoI CTYRAG 2 cut(s) 160, 491
SphI GCATGC 1 cut(s) 1029
SsiI CCGC 6 cut(s) 9, 21, 51, 87, 174, 1614
SspI AATATT 1 cut(s) 1507
SspMI CTAG 2 cut(s) 1133, 1436
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 3 cut(s) 351, 660, 1076
TaaI ACNGT 1 cut(s) 1052
TaiI ACGT 4 cut(s) 41, 71, 103, 1305
TaqI TCGA 2 cut(s) 313, 1455
TaqII GACCGA 1 cut(s) 52
TatI WGTACW 2 cut(s) 231, 1471
TauI GCSGC 4 cut(s) 11, 23, 53, 1617
TfiI GAWTC 4 cut(s) 310, 802, 986, 1387
Tru1I TTAA 6 cut(s) 161, 330, 383, 1314, 1509, 1581
Tru9I TTAA 6 cut(s) 161, 330, 383, 1314, 1509, 1581
TscAI CASTG 2 cut(s) 586, 1057
TseFI GTSAC 5 cut(s) 64, 96, 427, 445, 1427
TseI GCWGC 4 cut(s) 5, 150, 1442, 1466
Tsp45I GTSAC 5 cut(s) 64, 96, 427, 445, 1427
TspDTI ATGAA 6 cut(s) 616, 764, 777, 815, 1487, 1556
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 2 cut(s) 586, 1057
Vha464I CTTAAG 1 cut(s) 160
VspI ATTAAT 2 cut(s) 1314, 1509
XapI RAATTY 2 cut(s) 623, 928
XbaI TCTAGA 1 cut(s) 1132
XceI RCATGY 5 cut(s) 61, 1029, 1151, 1206, 1325
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmnI GAANNNNTTC 2 cut(s) 755, 806
XspI CTAG 2 cut(s) 1133, 1436
ZraI GACGTC 1 cut(s) 1303
ZrmI AGTACT 1 cut(s) 233
Zsp2I ATGCAT 2 cut(s) 1262, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.