RLG00000030325

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
59643928 .. 59644533
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030325

Sequence Viewer

Length: 471 bp
ATGGACTGTTTTGAGGAAACTGATGTGAATAGTGGGTCTGCATTAGAAATCTCATCTACCCATGATCGCATAAAATATGTGAGAGGTTCAATCTTTCACGGATGCGAATCAGTTTGGGGATCTTCAAATGAGTTCTTGCCTTCTGGATTGGGGCAAAAAGTGAATACAGAGCCAATGAGTTTCCGCTTGCCTATATCTGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTTCAAGAGCTGTCAAACCTTCCATCAAATAGTATACTAGATTTAAAGGCAGATGGCTGTACTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACGGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAATGGCAATCAAGGATGCAATAACATAGCATTTGAAATGCTGAAGACATTCATGTATCAGGTACTCCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

5.12

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 286
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 2 cut(s) 313, 459
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 7 cut(s) 90, 126, 257, 349, 373, 391, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 2 cut(s) 220, 262
AluI AGCT 2 cut(s) 220, 262
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 446
BccI CCATC 2 cut(s) 283, 299
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 290
BmsI GCATC 4 cut(s) 92, 325, 347, 401
BpiI GAAGAC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 106
BseGI GGATG 2 cut(s) 107, 416
BseJI GATNNNNATC 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 64, 119
BspACI CCGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 127
BssMI GATC 2 cut(s) 64, 119
BssNAI GTATAC 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 107, 416
BstKTI GATC 2 cut(s) 67, 122
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 64, 119
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BstZ17I GTATAC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 107, 416
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 312, 458
CviAII CATG 2 cut(s) 62, 448
CviJI RGCY 4 cut(s) 172, 220, 262, 309
CviKI_1 RGCY 4 cut(s) 172, 220, 262, 309
CviQI GTAC 2 cut(s) 312, 458
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 66, 121
DpnII GATC 2 cut(s) 64, 119
DraI TTTAAA 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 2 cut(s) 65, 451
FaiI YATR 8 cut(s) 63, 71, 78, 194, 287, 367, 422, 449
FatI CATG 2 cut(s) 61, 447
FblI GTMKAC 1 cut(s) 286
FokI GGATG 2 cut(s) 114, 423
FspBI CTAG 1 cut(s) 290
Hin1II CATG 2 cut(s) 65, 451
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 287
Hpy188III TCNNGA 2 cut(s) 144, 257
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 150, 281
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 41, 246, 338, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 65, 451
Kzo9I GATC 2 cut(s) 64, 119
LpnPI CCDG 3 cut(s) 129, 183, 440
LweI GCATC 4 cut(s) 92, 325, 347, 401
MaeI CTAG 1 cut(s) 290
MalI GATC 2 cut(s) 66, 121
MboI GATC 2 cut(s) 64, 119
MboII GAAGA 2 cut(s) 114, 451
MfeI CAATTG 1 cut(s) 382
MflI RGATCY 1 cut(s) 119
MluCI AATT 4 cut(s) 241, 343, 373, 382
MnlI CCTC 2 cut(s) 7, 77
Mph1103I ATGCAT 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 443
MseI TTAA 3 cut(s) 231, 296, 356
MunI CAATTG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 2 cut(s) 64, 119
NlaIII CATG 2 cut(s) 65, 451
NsiI ATGCAT 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 313, 459
RsaNI GTAC 2 cut(s) 312, 458
SaqAI TTAA 3 cut(s) 231, 296, 356
Sau3AI GATC 2 cut(s) 64, 119
SetI ASST 5 cut(s) 88, 222, 264, 273, 459
SfaNI GCATC 4 cut(s) 92, 325, 347, 401
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 241, 343, 373, 382
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 8
TasI AATT 4 cut(s) 241, 343, 373, 382
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 231, 296, 356
Tru9I TTAA 3 cut(s) 231, 296, 356
TscAI CASTG 1 cut(s) 324
TspDTI ATGAA 2 cut(s) 367, 436
TspGWI ACGGA 2 cut(s) 114, 366
TspRI CASTG 1 cut(s) 324
XapI RAATTY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.