Rmu_sc0007698.1_g000015

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007698.1
OG0000105
Physical Location & Seq
Reverse (-)
56353 .. 62148
5796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007698.1_g000015.1.cds

Sequence Viewer

Length: 4047 bp
atgccaagccaaacggatagtccttcttcttcttcttcctctcttcgatggaggtacgaggtgttcctcagtttcagaggtgaagatacacgcaaaaattttacagaccatctttacaatgctttgacgcagaaagggatattcacattcagagatgaagaagaacttgagagggggaaggcaatcaatccaaagctcttgaaagccattgaagaatcaagatatgtagtagtcgttctttcaaaaaattacgccagttcaagatggtgtttggatgagcttgcaaaagccgtggagtgcatgaaagccatgggacaaacaatcctgccggtgttctacgatgtggatccatctgatgtgcgaaaacaagcgggggatcatttcggaaaggcctttctgaagcacacagaggactttaaaggcaatccagacaaggtgcagaggtggagagatgctctttctcaagtaggcaatctcgctggatgggatttgcgagatggatatgaatcaaaagtaattcgagatatagttggaaagattttcactacattaaatcagctggcaatacccatattaccgtcaacttcttctcctcctcctcctcgatggaaatacgatgtatttgtcagtttccattgggatggtcctcacttggacatagttgatcgtctatatgatgcactagatgagaacggaattgttacctttagagatgacaaattacttgagagaggatcatccatttccccagtagttcttaaggcaatcgaggagtcaagagttgccgtcatcgttgtttcagcaaactatgcttcttcatcgtgctgcttggatgagcttttgaaaatttttcagtgcaaatataacatgaagctagcaatcataccaatcttctactcagtgcatatgcctgaattatgggaactaaggggagatccgattttgaaaccggaagtaagggaacatgaagaagtttatcgggagaatagggacaaacagaagtggagggatgctttgacacagctgtgctgcatgtctgctatgaagtccgagtaccctgagaatatgtcaccgaatatactcgatatggatcttctgtctgcatgggctacggacaccagtgggaataagtcgccgaatataggtcttatatgtgaagaaataaagaaattgattacatcatctgcaaatgtacacaagggcatggtaggaatggaatcccgcgttcatgatttagcacataattatgtatgtccacgttttcttgacgtacgtatcataggaatccatgggatgcggggtataggtaagacaactgttgcgcgagctgtttatcaccatattcgtgatgattttgaaagtagctgctttctttccaatgttagagaaaggtccaaaaaggatggtctagtttctttacaagaagaacttctttccagaatgctgtctacagaaattggaatagaggatgagtatgcaggagctgctctgataaaaaaacggttatgcaggcgaagagtacttgttgtcattgatgatgtggatgatctaacacaattggaaaatttggctggatgtcatgactggtttggcccgaggagtagaattatcataaccaccacagatgttcatttgttgaaggcatatggtgatagtgttgatagtatatatgaggcaactggattactatatggtgaatctcttaaacttttatgtttgaaggcttttaagaagagccaaccgcctgaagattatcggcacctgtgtcaccatattttaaattatgcccgccggctgcctttagctcttcaggtcattggttcctttctatgcggtagaagcatgggagaatgggtaagtgccattgataggctaaagaataaaccggaaagaagtattatcaatgtgcttcagataagttttgatggactaggggaaacagaaaaggaaatattcctacatgttgcatgcttttataaggggaagcccagggatcgtgtaatacaaatactagactattgtcagctttcccctgtcattgggttaagtgttcttgttgacaaatctctcgttactatttccaacgacaaagtatcgatgcatgatttgctacaggaaatgggctgggaaatagttcgccaagagtctcctaataatccaggcaaacgtagtagattatggtctcatgaagacatccacattgtgctgaagaaagataagggaacagaagcagttcaaggcatggtgatggacttgcctaaattagaagttgcccaatggaaaccggaagccttttcaaatttgtctcaacttagtttcctccaaattcgaaatgtggaccttcctaaaggtctcacttgtctctctaattcgttgaaactcctcgaatggattagataccctttaaggtttctcccacaagattttgaatcagatgaactcattgaacttaacttgtgccacagcaacattgaacagctttggcaaggagcaaagaactttgacaagttgaagttcatcaaactctgccattctgaaagcctttgtgagaccccagacttcacaggcgttcaaaatcttgaacgattagatcttgaaggatgtaaaaagttggttagaattcatccatcccttggagttctcaaaaagcttattctattgaatcttaaagattgtgaaagtctcaagagtctgccagagagaattgaaatggaatctctcgaaactctaattctttcaaactgctcaagtcttaagaagatccctgagtttgttggaaatatggaacgtttgttggtgcttactcttgacaagactgccattgaaacgctgcctaattcaattgagcgcttaagtggccttgtttccttggatttaagcaactgcaaaaatcttgtttctcctcctcacactattaatggattgaagtccttccaaaatctaagtctttccggatgcttgaaacttggcgaacatcagggtagtgtaagggagacggagtatatggagggaaatggtgcaagtagaactgctgtagcagagttgccatcatggaaagatagtttaagccattgttttgaagtggtccgggagcatttcccatggtccttcccttctagatcaatgcaaagagtcaatacagaaccaatgagtatgcagttgcatttatctggtctctgtaatttaacagacctaaacataagcaattgcaatctcggtgatggagcatttcccaacaactttggctgctttccctcattggtggcattgaatctgagtggaaatgattttgttaagcttccttcaagcatcaaatcgtttcttaagcttgaaaaccttaacttggagaattgcaagagacttaaagagttgtcagagcttccatcaaatagtaaattggatgtaagggcagatggctgttcatcactggacatgctgtttgatgcatccaatttcaatagattggagaaatcatatttcactttcatcaattgcttcagactaaatgacaatcaaggctgcagtaacatagcatttgaaatgctgaagacattcattcctcaggttatctcgaatgcaagggaaacttttcaaattgtaattcctggaagtaaaattcctgagtggttcgatcatcaaagtgttgggagttcattaagtgtacagttacctccattttggagtaacagtaagtttatggggtttgctttttgtgctgtttttgtactcgatgagcaccgtggagttgatgtacttggccagcatcaattcaagactttcaatgctacacaccatcttaatggtgggatagcagttgcagtcagcttgggttcttatttaaaaccagagggccaggtattccatcacaaaggcgtttattgttgcattatcatgacatttacttctatgttggattgcatttacctgttctctggccaatattgttatgctcctggatttcctatttgtcctcacaatgaaatgaaagatccaaatatttcccatttgatatcggaaagcggaggtacaccggaaagaagaacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

1348

Amino Acids

152.58

Weight (kDa)

6.3

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1977
AccB1I GGYRCC 1 cut(s) 1758
AccB7I CCANNNNNTGG 1 cut(s) 2633
AccI GTMKAC 1 cut(s) 1448
AccII CGCG 2 cut(s) 1224, 1324
AccIII TCCGGA 1 cut(s) 2951
AciI CCGC 7 cut(s) 371, 1222, 1297, 1742, 1789, 1833, 4020
AclI AACGTT 1 cut(s) 2788
AclWI GGATC 9 cut(s) 341, 354, 384, 742, 929, 1098, 2001, 2755, 3983
AcoI YGGCCR 2 cut(s) 3757, 3934
AcsI RAATTY 7 cut(s) 97, 846, 1564, 2299, 2325, 2619, 3615
AcuI CTGAAG 7 cut(s) 419, 1767, 1793, 1895, 2228, 3481, 3566
AdeI CACNNNGTG 1 cut(s) 2203
AfaI GTAC 9 cut(s) 56, 1055, 1194, 1272, 1521, 3663, 3726, 3753, 4027
AfeI AGCGCT 1 cut(s) 2849
AfiI CCNNNNNNNGG 5 cut(s) 1142, 1869, 2039, 2633, 3343
AflII CTTAAG 4 cut(s) 758, 2753, 2851, 3323
AflIII ACRYGT 1 cut(s) 1960
AjnI CCWGG 5 cut(s) 1988, 2158, 3604, 3852, 3952
AleI CACNNNNGTG 1 cut(s) 1024
Alw21I GWGCWC 1 cut(s) 3738
AlwI GGATC 9 cut(s) 341, 354, 384, 742, 929, 1098, 2001, 2755, 3983
AlwNI CAGNNNCTG 1 cut(s) 1484
Ama87I CYCGRG 1 cut(s) 1594
Aor13HI TCCGGA 1 cut(s) 2951
Aor51HI AGCGCT 1 cut(s) 2849
AoxI GGCC 6 cut(s) 390, 1591, 2857, 3757, 3850, 3934
ApeKI GCWGC 8 cut(s) 825, 1029, 1365, 1484, 1795, 2830, 3246, 3519
ApoI RAATTY 7 cut(s) 97, 846, 1564, 2299, 2325, 2619, 3615
ArsI GACNNNNNNTTYG 5 cut(s) 36, 2929, 2961, 3422, 3454
AseI ATTAAT 1 cut(s) 2916
Asp700I GAANNNNTTC 6 cut(s) 1428, 2133, 2232, 2930, 3551, 3588
AspLEI GCGC 2 cut(s) 1324, 2850
AspS9I GGNCC 7 cut(s) 644, 1392, 1592, 2338, 3085, 3105, 3850
AsuC2I CCSGG 1 cut(s) 3089
AsuHPI GGTGA 8 cut(s) 92, 1062, 1328, 1661, 1706, 1760, 2257, 3230
AsuII TTCGAA 1 cut(s) 2329
AsuNHI GCTAGC 1 cut(s) 874
AvaI CYCGRG 1 cut(s) 1594
AvaII GGWCC 5 cut(s) 644, 1392, 2338, 3085, 3105
AxyI CCTNAGG 1 cut(s) 3561
BaeI ACNNNNGTAYC 2 cut(s) 1258, 1291
BalI TGGCCA 2 cut(s) 3759, 3936
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 1758
BarI GAAGNNNNNNTAC 2 cut(s) 1037, 1069
BbsI GAAGAC 2 cut(s) 2196, 3554
Bbv12I GWGCWC 1 cut(s) 3738
BbvI GCAGC 8 cut(s) 812, 1016, 1352, 1471, 1782, 2817, 3233, 3506
BceAI ACGGC 2 cut(s) 275, 770
BciT130I CCWGG 5 cut(s) 1990, 2160, 3606, 3854, 3954
BcnI CCSGG 1 cut(s) 3089
BfaI CTAG 6 cut(s) 683, 875, 1409, 1931, 2012, 3117
BfmI CTRYAG 4 cut(s) 1449, 2111, 3033, 3520
BfoI RGCGCY 1 cut(s) 2851
BfrI CTTAAG 4 cut(s) 758, 2753, 2851, 3323
BglII AGATCT 1 cut(s) 2590
BisI GCNGC 8 cut(s) 826, 1030, 1366, 1485, 1796, 2831, 3247, 3520
BlsI GCNGC 8 cut(s) 827, 1031, 1367, 1486, 1797, 2832, 3248, 3521
BmcAI AGTACT 1 cut(s) 1521
Bme1390I CCNGG 6 cut(s) 1990, 2160, 3089, 3606, 3854, 3954
Bme18I GGWCC 5 cut(s) 644, 1392, 2338, 3085, 3105
BmeT110I CYCGRG 1 cut(s) 1594
BmgT120I GGNCC 7 cut(s) 644, 1392, 1592, 2338, 3085, 3105, 3850
BmiI GGNNCC 3 cut(s) 348, 1760, 1822
BmrFI CCNGG 6 cut(s) 1990, 2160, 3089, 3606, 3854, 3954
BmrI ACTGGG 1 cut(s) 743
BmtI GCTAGC 1 cut(s) 878
BmuI ACTGGG 1 cut(s) 743
BoxI GACNNNNGTC 1 cut(s) 2019
BpiI GAAGAC 2 cut(s) 2196, 3554
BplI GAGNNNNNCTC 2 cut(s) 439, 471
Bpu14I TTCGAA 1 cut(s) 2329
BpuEI CTTGAG 5 cut(s) 188, 447, 746, 2669, 2731
BpuMI CCSGG 1 cut(s) 3089
Bsa29I ATCGAT 1 cut(s) 2096
BsaAI YACGTR 1 cut(s) 1274
BsaBI GATNNNNATC 3 cut(s) 345, 505, 1089
BsaI GGTCTC 4 cut(s) 2187, 2357, 2543, 3179
BsaWI WCCGGW 5 cut(s) 949, 1885, 2284, 2951, 4030
Bsc4I CCNNNNNNNGG 5 cut(s) 1142, 1869, 2039, 2633, 3343
Bse118I RCCGGY 2 cut(s) 328, 1791
Bse1I ACTGG 6 cut(s) 255, 749, 1119, 1589, 1684, 3432
Bse21I CCTNAGG 1 cut(s) 3561
Bse8I GATNNNNATC 3 cut(s) 345, 505, 1089
BseAI TCCGGA 1 cut(s) 2951
BseBI CCWGG 5 cut(s) 1990, 2160, 3606, 3854, 3954
BseCI ATCGAT 1 cut(s) 2096
BseJI GATNNNNATC 3 cut(s) 345, 505, 1089
BseLI CCNNNNNNNGG 5 cut(s) 1142, 1869, 2039, 2633, 3343
BseMII CTCAG 7 cut(s) 82, 912, 1050, 2757, 3266, 3575, 3612
BseNI ACTGG 6 cut(s) 255, 749, 1119, 1589, 1684, 3432
BseRI GAGGAG 9 cut(s) 582, 585, 588, 591, 785, 1612, 2372, 2892, 2895
BseXI GCAGC 8 cut(s) 812, 1016, 1352, 1471, 1782, 2817, 3233, 3506
BseYI CCCAGC 1 cut(s) 2124
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 2 cut(s) 1224, 1324
BshFI GGCC 6 cut(s) 392, 1593, 2859, 3759, 3852, 3936
BshNI GGYRCC 1 cut(s) 1758
BshVI ATCGAT 1 cut(s) 2096
BsiHKAI GWGCWC 1 cut(s) 3738
BsiHKCI CYCGRG 1 cut(s) 1594
BsiSI CCGG 8 cut(s) 329, 950, 1792, 1886, 2285, 2952, 3088, 4031
BsiWI CGTACG 1 cut(s) 1270
BslFI GGGAC 2 cut(s) 327, 1004
BslI CCNNNNNNNGG 5 cut(s) 1142, 1869, 2039, 2633, 3343
BsmBI CGTCTC 1 cut(s) 2987
BsmFI GGGAC 2 cut(s) 327, 1004
BsmI GAATGC 2 cut(s) 1446, 3580
BsnI GGCC 6 cut(s) 392, 1593, 2859, 3759, 3852, 3936
Bso31I GGTCTC 4 cut(s) 2187, 2357, 2543, 3179
BsoBI CYCGRG 1 cut(s) 1594
Bsp119I TTCGAA 1 cut(s) 2329
Bsp1286I GDGCHC 1 cut(s) 3738
Bsp13I TCCGGA 1 cut(s) 2951
Bsp1407I TGTACA 2 cut(s) 1192, 3661
Bsp19I CCATGG 3 cut(s) 309, 1288, 3101
BspACI CCGC 7 cut(s) 371, 1222, 1297, 1742, 1789, 1833, 4020
BspANI GGCC 6 cut(s) 392, 1593, 2859, 3759, 3852, 3936
BspCNI CTCAG 7 cut(s) 81, 911, 1051, 2758, 3267, 3574, 3613
BspDI ATCGAT 1 cut(s) 2096
BspEI TCCGGA 1 cut(s) 2951
BspFNI CGCG 2 cut(s) 1224, 1324
BspHI TCATGA 4 cut(s) 1228, 1579, 2185, 3891
BspLI GGNNCC 3 cut(s) 348, 1760, 1822
BspMAI CTGCAG 1 cut(s) 3524
BspOI GCTAGC 1 cut(s) 878
BspPI GGATC 9 cut(s) 341, 354, 384, 742, 929, 1098, 2001, 2755, 3983
BspQI GCTCTTC 2 cut(s) 1727, 1812
BspT104I TTCGAA 1 cut(s) 2329
BspT107I GGYRCC 1 cut(s) 1758
BspTI CTTAAG 4 cut(s) 758, 2753, 2851, 3323
BspTNI GGTCTC 4 cut(s) 2187, 2357, 2543, 3179
BsrFI RCCGGY 2 cut(s) 328, 1791
BsrGI TGTACA 2 cut(s) 1192, 3661
BsrI ACTGG 6 cut(s) 255, 749, 1119, 1589, 1684, 3432
BssAI RCCGGY 2 cut(s) 328, 1791
BssT1I CCWWGG 5 cut(s) 309, 1288, 2632, 2868, 3101
Bst2UI CCWGG 5 cut(s) 1990, 2160, 3606, 3854, 3954
Bst4CI ACNGT 6 cut(s) 579, 1318, 1503, 3666, 3689, 3740
Bst6I CTCTTC 4 cut(s) 48, 1510, 1727, 1812
BstAFI CTTAAG 4 cut(s) 758, 2753, 2851, 3323
BstAPI GCANNNNNTGC 3 cut(s) 809, 1484, 2107
BstAUI TGTACA 2 cut(s) 1192, 3661
BstBAI YACGTR 1 cut(s) 1274
BstBI TTCGAA 1 cut(s) 2329
BstC8I GCNNGC 9 cut(s) 282, 561, 876, 1326, 1511, 1789, 1793, 1969, 3761
BstDSI CCRYGG 5 cut(s) 291, 309, 1288, 3101, 3739
BstFNI CGCG 2 cut(s) 1224, 1324
BstH2I RGCGCY 1 cut(s) 2851
BstHHI GCGC 2 cut(s) 1324, 2850
BstMWI GCNNNNNNNGC 6 cut(s) 809, 1484, 1839, 2107, 2856, 3713
BstNI CCWGG 5 cut(s) 1990, 2160, 3606, 3854, 3954
BstNSI RCATGY 4 cut(s) 1036, 1964, 1971, 3436
BstPAI GACNNNNGTC 1 cut(s) 2019
BstSCI CCNGG 6 cut(s) 1988, 2158, 3087, 3604, 3852, 3952
BstSFI CTRYAG 4 cut(s) 1449, 2111, 3033, 3520
BstSNI TACGTA 1 cut(s) 1274
BstUI CGCG 2 cut(s) 1224, 1324
BstV1I GCAGC 8 cut(s) 812, 1016, 1352, 1471, 1782, 2817, 3233, 3506
BstV2I GAAGAC 2 cut(s) 2196, 3554
BstX2I RGATCY 6 cut(s) 346, 934, 1090, 2590, 2760, 3988
BstXI CCANNNNNNTGG 2 cut(s) 641, 3800
BstYI RGATCY 6 cut(s) 346, 934, 1090, 2590, 2760, 3988
Bsu15I ATCGAT 1 cut(s) 2096
Bsu36I CCTNAGG 1 cut(s) 3561
BsuRI GGCC 6 cut(s) 392, 1593, 2859, 3759, 3852, 3936
BsuTUI ATCGAT 1 cut(s) 2096
BtgI CCRYGG 5 cut(s) 291, 309, 1288, 3101, 3739
BtsIMutI CAGTG 4 cut(s) 860, 906, 1126, 3425
Cac8I GCNNGC 9 cut(s) 282, 561, 876, 1326, 1511, 1789, 1793, 1969, 3761
CaiI CAGNNNCTG 1 cut(s) 1484
CciI TCATGA 4 cut(s) 1228, 1579, 2185, 3891
CfoI GCGC 2 cut(s) 1324, 2850
Cfr10I RCCGGY 2 cut(s) 328, 1791
Cfr13I GGNCC 7 cut(s) 644, 1392, 1592, 2338, 3085, 3105, 3850
ClaI ATCGAT 1 cut(s) 2096
CseI GACGC 1 cut(s) 136
Csp6I GTAC 9 cut(s) 55, 1054, 1193, 1271, 1520, 3662, 3725, 3752, 4026
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviQI GTAC 9 cut(s) 55, 1054, 1193, 1271, 1520, 3662, 3725, 3752, 4026
DraI TTTAAA 3 cut(s) 418, 1779, 3840
DraIII CACNNNGTG 1 cut(s) 2203
EaeI YGGCCR 2 cut(s) 3757, 3934
Eam1104I CTCTTC 4 cut(s) 48, 1510, 1727, 1812
EarI CTCTTC 4 cut(s) 48, 1510, 1727, 1812
Eco105I TACGTA 1 cut(s) 1274
Eco130I CCWWGG 5 cut(s) 309, 1288, 2632, 2868, 3101
Eco147I AGGCCT 1 cut(s) 392
Eco31I GGTCTC 4 cut(s) 2187, 2357, 2543, 3179
Eco32I GATATC 1 cut(s) 4011
Eco47I GGWCC 5 cut(s) 644, 1392, 2338, 3085, 3105
Eco47III AGCGCT 1 cut(s) 2849
Eco57I CTGAAG 7 cut(s) 419, 1767, 1793, 1895, 2228, 3481, 3566
Eco81I CCTNAGG 1 cut(s) 3561
Eco88I CYCGRG 1 cut(s) 1594
EcoRI GAATTC 1 cut(s) 2619
EcoRII CCWGG 5 cut(s) 1988, 2158, 3604, 3852, 3952
EcoRV GATATC 1 cut(s) 4011
EcoT14I CCWWGG 5 cut(s) 309, 1288, 2632, 2868, 3101
EcoT22I ATGCAT 2 cut(s) 2103, 3448
ErhI CCWWGG 5 cut(s) 309, 1288, 2632, 2868, 3101
Esp3I CGTCTC 1 cut(s) 2987
FalI AAGNNNNNCTT 8 cut(s) 150, 182, 1413, 1445, 1416, 1448, 3571, 3603
FaqI GGGAC 2 cut(s) 327, 1004
FauI CCCGC 4 cut(s) 364, 1229, 1290, 1796
FauNDI CATATG 2 cut(s) 906, 1645
FblI GTMKAC 1 cut(s) 1448
Fnu4HI GCNGC 8 cut(s) 826, 1030, 1366, 1485, 1796, 2831, 3247, 3520
Fsp4HI GCNGC 8 cut(s) 826, 1030, 1366, 1485, 1796, 2831, 3247, 3520
FspBI CTAG 6 cut(s) 683, 875, 1409, 1931, 2012, 3117
GlaI GCGC 2 cut(s) 1323, 2849
GluI GCNGC 8 cut(s) 826, 1030, 1366, 1485, 1796, 2831, 3247, 3520
GsaI CCCAGC 1 cut(s) 2128
HaeII RGCGCY 1 cut(s) 2851
HaeIII GGCC 6 cut(s) 392, 1593, 2859, 3759, 3852, 3936
HapII CCGG 8 cut(s) 329, 950, 1792, 1886, 2285, 2952, 3088, 4031
HgaI GACGC 1 cut(s) 136
HhaI GCGC 2 cut(s) 1324, 2850
Hin6I GCGC 2 cut(s) 1322, 2848
HinP1I GCGC 2 cut(s) 1322, 2848
HincII GTYRAC 2 cut(s) 582, 2059
HindII GTYRAC 2 cut(s) 582, 2059
HindIII AAGCTT 3 cut(s) 2648, 3296, 3326
HpaII CCGG 8 cut(s) 329, 950, 1792, 1886, 2285, 2952, 3088, 4031
HphI GGTGA 8 cut(s) 92, 1062, 1328, 1661, 1706, 1760, 2257, 3230
Hpy166II GTNNAC 8 cut(s) 582, 1195, 1256, 1449, 2059, 2338, 3662, 4028
Hpy8I GTNNAC 8 cut(s) 582, 1195, 1256, 1449, 2059, 2338, 3662, 4028
HpyCH4III ACNGT 6 cut(s) 579, 1318, 1503, 3666, 3689, 3740
HpyCH4IV ACGT 5 cut(s) 1258, 1269, 1273, 2167, 2788
HpyF10VI GCNNNNNNNGC 6 cut(s) 809, 1484, 1839, 2107, 2856, 3713
HpySE526I ACGT 5 cut(s) 1258, 1269, 1273, 2167, 2788
HspAI GCGC 2 cut(s) 1322, 2848
Kpn2I TCCGGA 1 cut(s) 2951
KroI GCCGGC 1 cut(s) 1791
KroNI GCCGGC 1 cut(s) 1793
LguI GCTCTTC 2 cut(s) 1727, 1812
LmnI GCTCC 5 cut(s) 1481, 2489, 3091, 3224, 3955
Lsp1109I GCAGC 8 cut(s) 812, 1016, 1352, 1471, 1782, 2817, 3233, 3506
MaeI CTAG 6 cut(s) 683, 875, 1409, 1931, 2012, 3117
MaeII ACGT 5 cut(s) 1258, 1269, 1273, 2167, 2788
MaeIII GTNAC 7 cut(s) 700, 1068, 1766, 2071, 3524, 3666, 3683
MfeI CAATTG 4 cut(s) 1556, 2841, 3205, 3490
MflI RGATCY 6 cut(s) 346, 934, 1090, 2590, 2760, 3988
MhlI GDGCHC 1 cut(s) 3738
MlsI TGGCCA 2 cut(s) 3759, 3936
MluNI TGGCCA 2 cut(s) 3759, 3936
MlyI GAGTC 4 cut(s) 782, 2153, 2698, 3141
MmeI TCCRAC 4 cut(s) 511, 2106, 2755, 3891
Mox20I TGGCCA 2 cut(s) 3759, 3936
Mph1103I ATGCAT 2 cut(s) 2103, 3448
MroI TCCGGA 1 cut(s) 2951
MroNI GCCGGC 1 cut(s) 1791
MroXI GAANNNNTTC 6 cut(s) 1428, 2133, 2232, 2930, 3551, 3588
MscI TGGCCA 2 cut(s) 3759, 3936
MslI CAYNNNNRTG 8 cut(s) 639, 1024, 1245, 1344, 2246, 3639, 3798, 3890
Msp20I TGGCCA 2 cut(s) 3759, 3936
MspA1I CMGCKG 2 cut(s) 559, 1024
MspCI CTTAAG 4 cut(s) 758, 2753, 2851, 3323
MspI CCGG 8 cut(s) 329, 950, 1792, 1886, 2285, 2952, 3088, 4031
MspR9I CCNGG 6 cut(s) 1990, 2160, 3089, 3606, 3854, 3954
MunI CAATTG 4 cut(s) 1556, 2841, 3205, 3490
Mva1269I GAATGC 2 cut(s) 1446, 3580
MvaI CCWGG 5 cut(s) 1990, 2160, 3606, 3854, 3954
MvnI CGCG 2 cut(s) 1224, 1324
MwoI GCNNNNNNNGC 6 cut(s) 809, 1484, 1839, 2107, 2856, 3713
NaeI GCCGGC 1 cut(s) 1793
NciI CCSGG 1 cut(s) 3089
NcoI CCATGG 3 cut(s) 309, 1288, 3101
NdeI CATATG 2 cut(s) 906, 1645
NgoMIV GCCGGC 1 cut(s) 1791
NheI GCTAGC 1 cut(s) 874
NlaIV GGNNCC 3 cut(s) 348, 1760, 1822
NmuCI GTSAC 2 cut(s) 1068, 1766
NsiI ATGCAT 2 cut(s) 2103, 3448
NspI RCATGY 4 cut(s) 1036, 1964, 1971, 3436
NspV TTCGAA 1 cut(s) 2329
OliI CACNNNNGTG 1 cut(s) 1024
PaeI GCATGC 1 cut(s) 1971
PagI TCATGA 4 cut(s) 1228, 1579, 2185, 3891
PasI CCCWGGG 1 cut(s) 1989
PceI AGGCCT 1 cut(s) 392
PciI ACATGT 1 cut(s) 1960
PciSI GCTCTTC 2 cut(s) 1727, 1812
PctI GAATGC 2 cut(s) 1446, 3580
PdiI GCCGGC 1 cut(s) 1793
PdmI GAANNNNTTC 6 cut(s) 1428, 2133, 2232, 2930, 3551, 3588
PfeI GAWTC 9 cut(s) 215, 506, 1217, 1284, 1697, 2429, 2662, 2714, 3271
Pfl23II CGTACG 1 cut(s) 1270
PflMI CCANNNNNTGG 1 cut(s) 2633
PfoI TCCNGGA 3 cut(s) 3087, 3604, 3952
PkrI GCNGC 8 cut(s) 827, 1031, 1367, 1486, 1797, 2832, 3248, 3521
PleI GAGTC 4 cut(s) 781, 2152, 2697, 3140
PpsI GAGTC 4 cut(s) 781, 2152, 2697, 3140
Ppu21I YACGTR 1 cut(s) 1274
PscI ACATGT 1 cut(s) 1960
PshAI GACNNNNGTC 1 cut(s) 2019
PshBI ATTAAT 1 cut(s) 2916
PsiI TTATAA 1 cut(s) 1977
Psp1406I AACGTT 1 cut(s) 2788
Psp6I CCWGG 5 cut(s) 1988, 2158, 3604, 3852, 3952
PspFI CCCAGC 1 cut(s) 2124
PspGI CCWGG 5 cut(s) 1988, 2158, 3604, 3852, 3952
PspLI CGTACG 1 cut(s) 1270
PspN4I GGNNCC 3 cut(s) 348, 1760, 1822
PspPI GGNCC 7 cut(s) 644, 1392, 1592, 2338, 3085, 3105, 3850
PsrI GAACNNNNNNTAC 4 cut(s) 47, 79, 219, 251
PstI CTGCAG 1 cut(s) 3524
PstNI CAGNNNCTG 1 cut(s) 1484
PsuI RGATCY 6 cut(s) 346, 934, 1090, 2590, 2760, 3988
PvuII CAGCTG 2 cut(s) 559, 1024
RsaI GTAC 9 cut(s) 56, 1055, 1194, 1272, 1521, 3663, 3726, 3753, 4027
RsaNI GTAC 9 cut(s) 55, 1054, 1193, 1271, 1520, 3662, 3725, 3752, 4026
RseI CAYNNNNRTG 8 cut(s) 639, 1024, 1245, 1344, 2246, 3639, 3798, 3890
SapI GCTCTTC 2 cut(s) 1727, 1812
SatI GCNGC 8 cut(s) 826, 1030, 1366, 1485, 1796, 2831, 3247, 3520
Sau96I GGNCC 7 cut(s) 644, 1392, 1592, 2338, 3085, 3105, 3850
ScaI AGTACT 1 cut(s) 1521
SchI GAGTC 4 cut(s) 782, 2153, 2698, 3141
ScrFI CCNGG 6 cut(s) 1990, 2160, 3089, 3606, 3854, 3954
SduI GDGCHC 1 cut(s) 3738
SfcI CTRYAG 4 cut(s) 1449, 2111, 3033, 3520
SfuI TTCGAA 1 cut(s) 2329
SinI GGWCC 5 cut(s) 644, 1392, 2338, 3085, 3105
SmiMI CAYNNNNRTG 8 cut(s) 639, 1024, 1245, 1344, 2246, 3639, 3798, 3890
SmlI CTYRAG 9 cut(s) 167, 462, 725, 758, 2684, 2746, 2753, 2851, 3323
SmoI CTYRAG 9 cut(s) 167, 462, 725, 758, 2684, 2746, 2753, 2851, 3323
SnaBI TACGTA 1 cut(s) 1274
SphI GCATGC 1 cut(s) 1971
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 7 cut(s) 371, 1222, 1297, 1742, 1789, 1833, 4020
SspI AATATT 3 cut(s) 1953, 3941, 3997
SspMI CTAG 6 cut(s) 683, 875, 1409, 1931, 2012, 3117
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 6 cut(s) 1988, 2158, 3087, 3604, 3852, 3952
StyI CCWWGG 5 cut(s) 309, 1288, 2632, 2868, 3101
TaaI ACNGT 6 cut(s) 579, 1318, 1503, 3666, 3689, 3740
TaiI ACGT 5 cut(s) 1261, 1272, 1276, 2170, 2791
TatI WGTACW 5 cut(s) 1192, 1519, 3661, 3724, 3751
TfiI GAWTC 9 cut(s) 215, 506, 1217, 1284, 1697, 2429, 2662, 2714, 3271
TscAI CASTG 4 cut(s) 860, 906, 1126, 3432
TseFI GTSAC 2 cut(s) 1068, 1766
TseI GCWGC 8 cut(s) 825, 1029, 1365, 1484, 1795, 2830, 3246, 3519
Tsp45I GTSAC 2 cut(s) 1068, 1766
TspGWI ACGGA 4 cut(s) 29, 708, 1127, 3011
TspRI CASTG 4 cut(s) 860, 906, 1126, 3432
Van91I CCANNNNNTGG 1 cut(s) 2633
Vha464I CTTAAG 4 cut(s) 758, 2753, 2851, 3323
VpaK11BI GGWCC 5 cut(s) 644, 1392, 2338, 3085, 3105
VspI ATTAAT 1 cut(s) 2916
XapI RAATTY 7 cut(s) 97, 846, 1564, 2299, 2325, 2619, 3615
XbaI TCTAGA 1 cut(s) 3116
XceI RCATGY 4 cut(s) 1036, 1964, 1971, 3436
XcmI CCANNNNNNNNNTGG 1 cut(s) 3800
XmiI GTMKAC 1 cut(s) 1448
XmnI GAANNNNTTC 6 cut(s) 1428, 2133, 2232, 2930, 3551, 3588
XspI CTAG 6 cut(s) 683, 875, 1409, 1931, 2012, 3117
ZrmI AGTACT 1 cut(s) 1521
Zsp2I ATGCAT 2 cut(s) 2103, 3448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.