Rroxscaffold_4G00327110

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000105
Physical Location & Seq
Forward (+)
59544644 .. 59548011
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327110.1

Sequence Viewer

Length: 1485 bp
ATGGCGTCAACCTCTTCTCGTCGTCAATGGAAATACGATGTCTTTCTAAGTTTCAGGGGGTTAGATACGCGCAGGGGTTTTACCCGTCATCTGTATTCTGCACTAACTCAGAAAGGAATTCTCACCTTTATGGATGACGCAGAGCTTAAGAAAGGAAAATCCATTAGGCCTGAACTTTTAGCTGCAATTGAGGACTCTAGATCTGCGGTTGTCGTTCTCTCATTCAGATATGCTTGTTCGCCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGACATGGGCCAACAAGTCCTCCCCGTCTTCTACAAGGTGGCTCCTTCTGATGTGCGGCACCAAACGGGAAGTTTTGAGCTAAAAAATTTACATGAAGTAGAAGTAAGGGAACATGAAGAAGTTTATGGGAAGAATGATGAGGACAGAATATATGCGTGGAGAGCTGCTTTGACAGAGGTGGCCAATCTTTCTGGCTGGCATTTTACGGGTGGAGTTATCATAACCACCACAGATGTTCAGTTGTTAAAGGCACATGATGTTGATGCTACATACAAGCCTAACGGCTTAAACTGTGATGAAGCACTTCAACTTTTGAGTTTGAAGGCTTTTAAGAAATGTCCCCCACCAGTAGATTATTTGCATCTGTGCTACCATATTTTAGGGTATGCTCAGGGGCTTCCGTTGGCTCTCGTGGTTTTAGGTTCTTTTCTGTTTGGTAGAAGCGCTGATGAATGGGCAAGTGCAATAGATAGGCTAAAGAACACACCACATAAACGAATTATTGAGGTGCTTCGGATTAGTTTTGATGGACTGGATGAAAAAGACAAAGAAATATTCCTACATATTGCTTGCTTTTACAAGGGGAAGGATAAGGATCGTGTGACACAAATACTAGACTATTGCCAGCTAAACCCTGTCATTGGTTTGAGTGTTCTTGCTGATAGATCTCTCATCACGATCTCCGACGACAAAGAACTGTTGATGCATGATTTGCTACAAGAAACAGGCTGGGAAATTGTTCGTGAACAGTCTCCTACAGATCCAGGCAAACGTAGTAGATTATGGTCTCATGAAGACATCAACAATGTGTTGAAGAGAAATAAGGGAACAGATTCAATCCAAGGCATGGTAATGGAGTTGACTGAATTACAAGAGGCTCAATGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTATTCTTCTCCATATTCGTAATGTGGACCTTCCCAATGGCCTCACTTGTCTTTCTAATTCCTTGAGATTCCTCGAATGGACTGGGTATCCCTTAATATCTCTACCACAAAATTTCGAAGCAGGTGAACTTATTGAACTTAACCTGTGCCACAGCAACATTGGACAGCTTTGGAAGGGAACAAAGGTATGGCTATTAGTTAATAGTCTTCTTGTTTATGAGCAAATTTTCTGCTCTGTGGTGGCTCACTATTTCGATTTTATGAGCAGAATTTTGACGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

494

Amino Acids

56.41

Weight (kDa)

6.04

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 163 1.3e-45 TIR domain
TIR_2 PF13676 14 - 131 2.8e-14 TIR domain
WHD_ROQ1 PF23282 274 - 346 4.4e-22 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1313
Acc36I ACCTGC 1 cut(s) 1313
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 1132
AccII CGCG 1 cut(s) 70
AciI CCGC 2 cut(s) 206, 340
AclWI GGATC 2 cut(s) 888, 1040
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 6 cut(s) 117, 370, 1189, 1312, 1425, 1470
AcyI GRCGYC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 730
AfiI CCNNNNNNNGG 2 cut(s) 926, 1132
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 7 cut(s) 275, 593, 607, 1099, 1122, 1188, 1337
AjnI CCWGG 1 cut(s) 1048
AluBI AGCT 6 cut(s) 145, 182, 364, 449, 913, 1369
AluI AGCT 6 cut(s) 145, 182, 364, 449, 913, 1369
Alw26I GTCTC 3 cut(s) 1041, 1077, 1200
AlwI GGATC 2 cut(s) 888, 1040
Aor51HI AGCGCT 1 cut(s) 730
AoxI GGCC 4 cut(s) 167, 292, 465, 1240
ApeKI GCWGC 2 cut(s) 182, 449
ApoI RAATTY 6 cut(s) 117, 370, 1189, 1312, 1425, 1470
Asp700I GAANNNNTTC 3 cut(s) 588, 1023, 1117
AspLEI GCGC 2 cut(s) 72, 731
AspS9I GGNCC 2 cut(s) 292, 1228
AsuHPI GGTGA 2 cut(s) 115, 1337
AsuII TTCGAA 1 cut(s) 1317
AvaII GGWCC 1 cut(s) 1228
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 342
BauI CACGAG 1 cut(s) 695
BbsI GAAGAC 3 cut(s) 304, 1086, 1400
BbvI GCAGC 2 cut(s) 169, 436
BccI CCATC 1 cut(s) 806
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 1 cut(s) 1050
BciVI GTATCC 1 cut(s) 1299
BcoDI GTCTC 3 cut(s) 1041, 1077, 1200
BfaI CTAG 2 cut(s) 198, 899
BfmI CTRYAG 1 cut(s) 1041
BfoI RGCGCY 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 1313
BfuI GTATCC 1 cut(s) 1299
BglII AGATCT 2 cut(s) 200, 950
BisI GCNGC 3 cut(s) 183, 341, 450
BlsI GCNGC 3 cut(s) 184, 342, 451
Bme1390I CCNGG 1 cut(s) 1050
Bme18I GGWCC 1 cut(s) 1228
BmgT120I GGNCC 2 cut(s) 292, 1228
BmiI GGNNCC 2 cut(s) 327, 344
BmrFI CCNGG 1 cut(s) 1050
BmrI ACTGGG 1 cut(s) 1293
BmsI GCATC 3 cut(s) 538, 655, 978
BmuI ACTGGG 1 cut(s) 1293
BpiI GAAGAC 3 cut(s) 304, 1086, 1400
Bpu10I CCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 1317
BpuEI CTTGAG 1 cut(s) 1285
BsaBI GATNNNNATC 1 cut(s) 879
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1077
BsaJI CCNNGG 2 cut(s) 242, 1126
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 1132
Bse1I ACTGG 3 cut(s) 632, 822, 1288
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 1050
BseDI CCNNGG 2 cut(s) 242, 1126
BseGI GGATG 3 cut(s) 139, 259, 826
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 2 cut(s) 926, 1132
BseMII CTCAG 2 cut(s) 122, 689
BseNI ACTGG 3 cut(s) 632, 822, 1288
BseXI GCAGC 2 cut(s) 169, 436
BseYI CCCAGC 1 cut(s) 1014
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 169, 294, 467, 1242
BshNI GGYRCC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 926, 1132
BsmAI GTCTC 3 cut(s) 1041, 1077, 1200
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 4 cut(s) 169, 294, 467, 1242
Bso31I GGTCTC 1 cut(s) 1077
Bsp119I TTCGAA 1 cut(s) 1317
Bsp143I GATC 5 cut(s) 200, 880, 950, 963, 1045
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 2 cut(s) 206, 340
BspANI GGCC 4 cut(s) 169, 294, 467, 1242
BspCNI CTCAG 2 cut(s) 121, 688
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 2 cut(s) 327, 344
BspMI ACCTGC 1 cut(s) 1313
BspPI GGATC 2 cut(s) 888, 1040
BspT104I TTCGAA 1 cut(s) 1317
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 1077
BsrI ACTGG 3 cut(s) 632, 822, 1288
BssECI CCNNGG 2 cut(s) 242, 1126
BssMI GATC 5 cut(s) 200, 880, 950, 963, 1045
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 695
BssT1I CCWWGG 2 cut(s) 242, 1126
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 1 cut(s) 1050
Bst4CI ACNGT 3 cut(s) 578, 984, 1035
Bst6I CTCTTC 2 cut(s) 19, 1094
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 997
BstBI TTCGAA 1 cut(s) 1317
BstC8I GCNNGC 3 cut(s) 482, 856, 911
BstDEI CTNAG 3 cut(s) 47, 108, 675
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 139, 259, 826
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 732
BstHHI GCGC 2 cut(s) 72, 731
BstKTI GATC 5 cut(s) 203, 883, 953, 966, 1048
BstMAI GTCTC 3 cut(s) 1041, 1077, 1200
BstMBI GATC 5 cut(s) 200, 880, 950, 963, 1045
BstMWI GCNNNNNNNGC 2 cut(s) 446, 997
BstNI CCWGG 1 cut(s) 1050
BstSCI CCNGG 1 cut(s) 1048
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 169, 436
BstV2I GAAGAC 3 cut(s) 304, 1086, 1400
BstX2I RGATCY 3 cut(s) 200, 950, 1045
BstYI RGATCY 3 cut(s) 200, 950, 1045
BsuI GTATCC 1 cut(s) 1299
BsuRI GGCC 4 cut(s) 169, 294, 467, 1242
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 3 cut(s) 139, 259, 826
BveI ACCTGC 1 cut(s) 1313
Cac8I GCNNGC 3 cut(s) 482, 856, 911
CciI TCATGA 1 cut(s) 1075
CfoI GCGC 2 cut(s) 72, 731
Cfr13I GGNCC 2 cut(s) 292, 1228
CseI GACGC 1 cut(s) 146
CviAII CATG 9 cut(s) 243, 280, 289, 377, 398, 539, 992, 1076, 1132
DdeI CTNAG 3 cut(s) 47, 108, 675
DpnI GATC 5 cut(s) 202, 882, 952, 965, 1047
DpnII GATC 5 cut(s) 200, 880, 950, 963, 1045
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 19, 1094
EarI CTCTTC 2 cut(s) 19, 1094
Eco130I CCWWGG 2 cut(s) 242, 1126
Eco147I AGGCCT 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 1077
Eco47I GGWCC 1 cut(s) 1228
Eco47III AGCGCT 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 1048
EcoT14I CCWWGG 2 cut(s) 242, 1126
EcoT22I ATGCAT 2 cut(s) 281, 993
ErhI CCWWGG 2 cut(s) 242, 1126
FaeI CATG 9 cut(s) 246, 283, 292, 380, 401, 542, 995, 1079, 1135
FaqI GGGAC 1 cut(s) 609
FatI CATG 9 cut(s) 242, 279, 288, 376, 397, 538, 991, 1075, 1131
Fnu4HI GCNGC 3 cut(s) 183, 341, 450
FokI GGATG 3 cut(s) 146, 266, 833
Fsp4HI GCNGC 3 cut(s) 183, 341, 450
FspBI CTAG 2 cut(s) 198, 899
GlaI GCGC 2 cut(s) 71, 730
GluI GCNGC 3 cut(s) 183, 341, 450
GsaI CCCAGC 1 cut(s) 1018
HaeII RGCGCY 1 cut(s) 732
HaeIII GGCC 4 cut(s) 169, 294, 467, 1242
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 72, 731
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 9 cut(s) 246, 283, 292, 380, 401, 542, 995, 1079, 1135
Hin6I GCGC 2 cut(s) 70, 729
HinP1I GCGC 2 cut(s) 70, 729
HincII GTYRAC 2 cut(s) 9, 1146
HindII GTYRAC 2 cut(s) 9, 1146
HinfI GANTC 3 cut(s) 194, 1118, 1269
HphI GGTGA 2 cut(s) 115, 1337
Hpy166II GTNNAC 5 cut(s) 9, 1031, 1146, 1228, 1328
Hpy188I TCNGA 5 cut(s) 111, 227, 334, 801, 970
Hpy188III TCNNGA 5 cut(s) 198, 265, 961, 1028, 1076
Hpy8I GTNNAC 5 cut(s) 9, 1031, 1146, 1228, 1328
Hpy99I CGWCG 2 cut(s) 24, 974
HpyAV CCTTC 5 cut(s) 339, 601, 865, 1241, 1369
HpyCH4III ACNGT 3 cut(s) 578, 984, 1035
HpyCH4IV ACGT 1 cut(s) 1057
HpyCH4V TGCA 6 cut(s) 101, 185, 279, 646, 749, 991
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 997
HpyF3I CTNAG 3 cut(s) 47, 108, 675
HpySE526I ACGT 1 cut(s) 1057
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 9 cut(s) 246, 283, 292, 380, 401, 542, 995, 1079, 1135
HspAI GCGC 2 cut(s) 70, 729
Kzo9I GATC 5 cut(s) 200, 880, 950, 963, 1045
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 2 cut(s) 169, 436
LweI GCATC 3 cut(s) 538, 655, 978
MaeI CTAG 2 cut(s) 198, 899
MaeII ACGT 1 cut(s) 1057
MaeIII GTNAC 1 cut(s) 886
MalI GATC 5 cut(s) 202, 882, 952, 965, 1047
MboI GATC 5 cut(s) 200, 880, 950, 963, 1045
MboII GAAGA 8 cut(s) 6, 304, 413, 427, 1091, 1111, 1199, 1400
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 3 cut(s) 200, 950, 1045
MlsI TGGCCA 1 cut(s) 467
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 993
MnlI CCTC 9 cut(s) 22, 184, 314, 418, 454, 784, 1153, 1253, 1283
Mox20I TGGCCA 1 cut(s) 467
Mph1103I ATGCAT 2 cut(s) 281, 993
MroXI GAANNNNTTC 3 cut(s) 588, 1023, 1117
MscI TGGCCA 1 cut(s) 467
MseI TTAA 7 cut(s) 147, 530, 572, 615, 1295, 1341, 1401
MslI CAYNNNNRTG 2 cut(s) 128, 1136
Msp20I TGGCCA 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 1050
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 1050
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 446, 997
NcoI CCATGG 1 cut(s) 242
NdeII GATC 5 cut(s) 200, 880, 950, 963, 1045
NlaIII CATG 9 cut(s) 246, 283, 292, 380, 401, 542, 995, 1079, 1135
NlaIV GGNNCC 2 cut(s) 327, 344
NmuCI GTSAC 1 cut(s) 886
NsiI ATGCAT 2 cut(s) 281, 993
NspV TTCGAA 1 cut(s) 1317
PagI TCATGA 1 cut(s) 1075
PaqCI CACCTGC 1 cut(s) 1313
PceI AGGCCT 1 cut(s) 169
PdmI GAANNNNTTC 3 cut(s) 588, 1023, 1117
PfeI GAWTC 2 cut(s) 1118, 1269
PflMI CCANNNNNTGG 1 cut(s) 1132
PkrI GCNGC 3 cut(s) 184, 342, 451
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 1048
PspFI CCCAGC 1 cut(s) 1014
PspGI CCWGG 1 cut(s) 1048
PspN4I GGNNCC 2 cut(s) 327, 344
PspPI GGNCC 2 cut(s) 292, 1228
PsuI RGATCY 3 cut(s) 200, 950, 1045
RseI CAYNNNNRTG 2 cut(s) 128, 1136
SaqAI TTAA 7 cut(s) 147, 530, 572, 615, 1295, 1341, 1401
SatI GCNGC 3 cut(s) 183, 341, 450
Sau3AI GATC 5 cut(s) 200, 880, 950, 963, 1045
Sau96I GGNCC 2 cut(s) 292, 1228
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 1050
SfaNI GCATC 3 cut(s) 538, 655, 978
SfcI CTRYAG 1 cut(s) 1041
SfuI TTCGAA 1 cut(s) 1317
SinI GGWCC 1 cut(s) 1228
SmiMI CAYNNNNRTG 2 cut(s) 128, 1136
SmlI CTYRAG 2 cut(s) 146, 1264
SmoI CTYRAG 2 cut(s) 146, 1264
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 2 cut(s) 206, 340
SspI AATATT 1 cut(s) 840
SspMI CTAG 2 cut(s) 198, 899
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 1048
StyI CCWWGG 2 cut(s) 242, 1126
TaaI ACNGT 3 cut(s) 578, 984, 1035
TaiI ACGT 1 cut(s) 1060
TaqI TCGA 3 cut(s) 1275, 1317, 1455
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 2 cut(s) 1118, 1269
Tru1I TTAA 7 cut(s) 147, 530, 572, 615, 1295, 1341, 1401
Tru9I TTAA 7 cut(s) 147, 530, 572, 615, 1295, 1341, 1401
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 2 cut(s) 182, 449
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 8 cut(s) 270, 296, 393, 414, 597, 750, 837, 1092
TspGWI ACGGA 1 cut(s) 675
Van91I CCANNNNNTGG 1 cut(s) 1132
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 1228
XapI RAATTY 6 cut(s) 117, 370, 1189, 1312, 1425, 1470
XbaI TCTAGA 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 1358
XmnI GAANNNNTTC 3 cut(s) 588, 1023, 1117
XspI CTAG 2 cut(s) 198, 899
Zsp2I ATGCAT 2 cut(s) 281, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.