Rroxscaffold_7G00214100

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000105
Physical Location & Seq
Reverse (-)
64599445 .. 64614291
14847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214100.1

Sequence Viewer

Length: 4413 bp
ATGGAACTCATGGATGTTCCTCCAGACGACAGTGTGACTGATACTGCAGATACATTTCAAGATGTGGAGGAAGCAGAATCCAACGAAGTTGGAGAAGAACCAAATGACTCCGAAAAGAAACCGCGCCTACCCAAGATTAAAAAACCTTCAAGGAGTAGAGAAAAGAAGAGAAAAGACGAGCATTCTGGAATCCGTCAAGTTCTGAATAATGTATTTTGGTCTGATTTACAGGAGGCAGAACAACCTCAAGATGGTGACAACGATGAAGATCAAAATCCAGAACAACATTATGAAGCGGAACAAGAGACAAAGAACACAATATCTGCTCAAGATGAGGGGGAAGGATCTAATCCAGTTAAAGAAGAATCAAATGAGCCTCGCCTACCCAAGATTAAAAAACCTTCAAGGAGTAGAGAAAAGAAGAGAAAAGACGAGCATTCTGGAATCCGTCAAGTTCTGAATAATGTATTTTGGTCTGATTTACAGGAGGCAGAACAACCTCAAGATGGTGACAACGATGAAGATCAAAATCCAGAACAACATTATGAAGCGGAACAAGAGACAAAGAACACAATATCTGCTCAAGATGAGGGGGAAGGATCTAATCCAGTTAAAGAAGAATCAAATGAGCCTCGCCTACCCAAGATTAAAAAACCTTCAAGGAGTAGAGAAAAGAAGAGAAAAGAGGAGCGTTCTAGACTCTGTCAAGTTCTGAATAATGTATTATGGTCTGATTTACAGGAGGCAGAACAACCTCAAGATGGTGACAACGATGAAGATCAAAATCCAGAACAACATTATGAAGCGGAACAAGAGACAAAGAACACAATATCTGCTCAAGATGAGGGGGAAGAATCTAATCCAGTTAAAGAAGAATCAAATGACCGCAGCGACAATCCTCACAGTAACCCAAGTGAGACTAACAATACAGATGCTACTCAAGATGATGCAGCTAAAGAGGATTCAAATGATCCCAAAAGAAGATTGCGGCCCCTTAAAAAGATGGGTACGAGAAGGCGAGATCCGCGATGGAAGTACGATGTGTTTCTAAGTTTCAGAGGGCCAGATACGCGCAAGGGGATTACCTCCGAGCTGAATGATACACTACAACGGAGAGGAATTAAAACCTTTATGGATGACCGCAATCTTGATGTAGGAGATTCCATTAGCCCGTCTCTTGTTTCAGCAATTGAGGAGTCAAGATTTGCCATTGTCATTCTTTCACCCAACTATGCTTCTTCGTCATGGTGCTTGGATGAACTCGTCACGATTATTCAATGCATGAAAGAGAAGGGGCTACGAGTCAAGCCCGTTTTCTACAAAGTGGAGCCTTCTGATGTGCGGCACCAAAGGGGAAGTTTTGAGCTCAAAGGGAAAACCCGACCCCAAGTAGAAGTAAGGGCACATGAAGAAGTTTATGGCAAGAATGAGGACAAATTAAAGGCGTGGAGAGCTGCTTTGACAGAGGTAGCCGATCTTTCTGGGTGGGATTCAAAGAATTTTAGAACCGAGAGAGAACTTGTTGAGGCAATTGTTGGGGATATTGGGAGGAAGGTGGTAAATAAATCTTCAAGTGTTGACAAGGGCTTTGTAGGAATGGATGTCCGTGTTGATGATTTATTACATCATTACATACATCAAGAGTGGGATGAGGTACGAATTATAGGGATACATGGGATGCGAGGAGTTGGTAAGACAGCGCTTGCTCAAGCTTTTTATGATGACTTTGGTGAGGGTTTTGAGAATAGATGCTTTCTTTTCAATGTTAGAGAAAGGTTTAACGGGGATGGCCTAGTTTCTTTACAAAAGAACCTTCTTTCCAGCATTTTGACGGACAAAATTGAATACATAGAGGATGAATATAAAGGAGCTGATGTGATTCAAAGAAGTTTATGTAAAATAAAGGTGCTTGTTGTTATTGATGATGTGGATCGGTTGGAACAATTAGAAAAATTGGCTGGAAGTCGCAACTGGTTCGGTCCAGGGAGCAGAATTATCATAACCACCACAGATTTTCACTTGTTAAAGGAACGTGGTGTTGATGCTACATACAACGTTACCGGGTTAAGTTCTGATGAAGCTCTTGAACTCTTGAGTTTAAAGGCTTTCAAGAAAATGTCCCCACCAGAAAATTATTCGGACCTGTGCGACCAAATTTTAGGGTATGCTCAGGGGCTGCCATTAGCTCTTGTGGTTTTAGGTTCTTTTTTATGTGGTAGAGAGCCCAATGAATGGGCAAGTGCAATTGATAGGCTAAAAAATACACCAAATAGCGGAATTATGGATGTGCTTCAGATTAGTTTTGATGGTCTAGAGGACAAAGACAGAGAAATATTCCTACATATTGCTTGTTTTTACAAGGGGAAAGATAGGGATCGTGTGACACAAATACTAGACTATTGTGAGCTGAACCCTGTCATTGGGTTACGAGTTCTTGCTGATAAATCTCTCATTACTATTTCCAGCAACGAACTGTCAATGCATGATTTGCTACAAGAAATGGGCTGGGAAATAGTTCGTCGAGAGTCTCCTAAAGAGCCAGGCAAACGTAGTAGATTATGGTCTCATGAAGACATCCACAAAATGTTGAAGAAAAATAAGGGAACAGAAGCAATCCAAGGGATGGTAATGGAGTTACCTAAGTTAGAAGTGGCTCATTGGAATCCAGAAGCCTTCTCAAATTTGTCTCAACTTAATCTTCTCCATATTCGTAATGTGGACCTTCCCGAAGGCCTCACTTGTCTTTCTGATTCCTTGAGACTCCTGGAATGGCCTGGGTGTCCGTTAAGATCTCTCCCACAAAAGTTCGAATCAGATGAACTTATTGAACTTAACTTGTGTCACAGCAATATTGAACATCTTTGGGAGGGAACAAAGAATTTTGAGAAGTTGAAGTTCATCAAACTCTGCCATTCTCTAAACATTGTGGATACCCCTGACCTCGTAGGCGTTCAGAATCTTGAGAGTTTAGATCTTGAAGGATGTAAGAGTTTGGTAAGAATCGAACAATCCCTTGGATTTCTCAAAAAGCTTATTGTCCTGAATCTTAAAGACTGCAAAAGTCTTGAGAGTCTGCCAGGTAGAATTGAAATGGAATCTCTTGAAACATTAATTCTTTCTAACTGCTCAAAAATTAAAAGAATTCCCGAGTTTGATGGAAATATGAAGCGTCTGTCTGTGCTTTATCTCGACGAGACTGCCATTGAGGAACTGCCTGTTTCAATTGGACGCCTGAGTGGCCTTCTGTCATTGAATCTAAGTAACTGCACAAATCTTGTTTGTCTTCCAAGCACCATCGATAATTTGAAGTTTGTTAAAAATCTTAATCTTTCTGGATGCATGAAACTTGGCAAACATCAGGAAAGCGTGGGGGAGAGGGAATGTTATGAGGAAAATGATGTGAATAGTGGGTCTGCAATAGAAATGTCAACTACCCATGATCTCATAAAGCATGTGAGAGGTTCATTCTTTCATGGATGCGAAGTGAATACAGAGCTGATGAGTTTCTGCTTGCCTATATCGGGTCTCTATAATTTAACATATCTGAACCTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGCGACCTTGAATCTAAGTGGAAACAATTTTGTACGTCTTCCTTCAGGCATTAGATTGCTTTCTAAGCTTGAGAACTTTAACGTGGAGAATTGCAAGAGACTTGAAGAGTTGTCAGACCTTCCATCAAATAGTATCCTTGATCTAAGGGCAGATGGTTGTACTTCGCTGAAATACTTGTTCGATGCATCAAACTTGAACAGATTAAACAAATCATATTTTAATTTCATCAATTGCGTCAATATAAATGGCAATCAAGGATGCAATAACATAGCATTTGAAATGCTGAAGACAATCATGTATCAGGGAATCTCTGATAAGAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTCCTGAGTGGTTCAGCCGTCGAAGTGTTGTGTGTTCATTAAGTGTGAAGCTGCCTCCAGATTGGGATAGCAGTAGGTTTATGGGATTTGCTGTGTGTGTTGTTTTTGTACTCCATGAGCACCATCGGGTAGATGAGCTTGATATTCATCAATTCAAGAATTTTAACGCTACTCATCATCTTGTATGTTGCCTGAAGCTCAATGGAAGAGAATTAGAAGTATACGACAGACAGCCTGCATTTCGCTTTAGTGAAGAGTTTGGCCAGCTGGCCTCAGATCACCTGTGGCTATTCTATGTATCTCGTGATAAATACTTTGGTACAGAGTGGTGGCATAACAGTTGCAGTCAGCTTGATTTCTTATTTAAAACCAGAGGGCCAGGTCTGGAGGTGAAGGAGTGTGGAGTTCGTCTGATATATGAGAAAGATGTGCAAGAGTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1470

Amino Acids

167.7

Weight (kDa)

5.14

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 345 - 525 3.4e-50 TIR domain
TIR_2 PF13676 348 - 445 1.4e-16 TIR domain
NB-ARC PF00931 549 - 705 3e-16 NB-ARC domain
WHD_ROQ1 PF23282 772 - 843 8.8e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 941 - 959 8.1e-06 Leucine Rich Repeat
LRR_13 PF23286 1032 - 1117 2.7e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 1043 - 1112 3.2e-07 Leucine-rich repeat region
C-JID PF20160 1318 - 1467 1.5e-17 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1344
AccB7I CCANNNNNTGG 2 cut(s) 2232, 2623
AccI GTMKAC 1 cut(s) 4188
AccII CGCG 3 cut(s) 124, 1027, 1072
AclI AACGTT 1 cut(s) 2055
AclWI GGATC 6 cut(s) 352, 607, 965, 1016, 1938, 2382
AcoI YGGCCR 1 cut(s) 4228
AcsI RAATTY 7 cut(s) 1498, 2154, 2680, 2878, 3141, 3590, 4126
AcuI CTGAAG 4 cut(s) 2276, 3639, 3917, 4181
AcyI GRCGYC 1 cut(s) 3229
AfaI GTAC 7 cut(s) 1009, 1037, 1656, 3645, 3772, 4077, 4288
AfeI AGCGCT 1 cut(s) 1701
AfiI CCNNNNNNNGG 8 cut(s) 251, 506, 761, 2232, 2273, 2420, 2623, 3521
AjnI CCWGG 7 cut(s) 1981, 2539, 2763, 2773, 3076, 3955, 4345
AjuI GAANNNNNNNTTGG 2 cut(s) 2997, 3029
AloI GAACNNNNNNTCC 2 cut(s) 1802, 1834
Alw21I GWGCWC 2 cut(s) 1368, 4089
AlwI GGATC 6 cut(s) 352, 607, 965, 1016, 1938, 2382
AlwNI CAGNNNCTG 1 cut(s) 2176
Ama87I CYCGRG 1 cut(s) 3146
Aor51HI AGCGCT 1 cut(s) 1701
AoxI GGCC 9 cut(s) 989, 1061, 1789, 2731, 2771, 3238, 4228, 4236, 4343
ApeKI GCWGC 5 cut(s) 888, 950, 1454, 2176, 4018
ApoI RAATTY 7 cut(s) 1498, 2154, 2680, 2878, 3141, 3590, 4126
ArsI GACNNNNNNTTYG 2 cut(s) 1571, 1603
AseI ATTAAT 1 cut(s) 3110
Asp700I GAANNNNTTC 2 cut(s) 2514, 3939
AspLEI GCGC 3 cut(s) 126, 1074, 1702
AspS9I GGNCC 6 cut(s) 990, 1061, 1979, 2140, 2719, 4343
AsuC2I CCSGG 1 cut(s) 2062
AsuHPI GGTGA 8 cut(s) 266, 521, 776, 1215, 1742, 3581, 4238, 4369
AsuII TTCGAA 1 cut(s) 2808
AvaI CYCGRG 1 cut(s) 3146
AvaII GGWCC 3 cut(s) 1979, 2140, 2719
BaeGI GKGCMC 1 cut(s) 1405
BalI TGGCCA 1 cut(s) 4230
BanI GGYRCC 1 cut(s) 1344
BanII GRGCYC 2 cut(s) 1368, 2226
BauI CACGAG 1 cut(s) 4269
BbsI GAAGAC 4 cut(s) 2577, 3275, 3641, 3905
Bbv12I GWGCWC 2 cut(s) 1368, 4089
BbvI GCAGC 5 cut(s) 900, 962, 1441, 2163, 4005
BceAI ACGGC 1 cut(s) 3969
BcgI CGANNNNNNTGC 4 cut(s) 1957, 1991, 3179, 3213
BciT130I CCWGG 7 cut(s) 1983, 2541, 2765, 2775, 3078, 3957, 4347
BciVI GTATCC 3 cut(s) 1662, 2923, 3755
BcnI CCSGG 1 cut(s) 2062
BfaI CTAG 4 cut(s) 696, 1793, 2312, 2393
BfmI CTRYAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 1703
BfuI GTATCC 3 cut(s) 1662, 2923, 3755
BglI GCCNNNNNGGC 1 cut(s) 3237
BglII AGATCT 2 cut(s) 2789, 2971
BisI GCNGC 7 cut(s) 889, 951, 989, 1343, 1455, 2177, 4019
BlsI GCNGC 7 cut(s) 890, 952, 990, 1344, 1456, 2178, 4020
Bme1390I CCNGG 8 cut(s) 1983, 2062, 2541, 2765, 2775, 3078, 3957, 4347
Bme18I GGWCC 3 cut(s) 1979, 2140, 2719
BmeT110I CYCGRG 1 cut(s) 3146
BmgT120I GGNCC 6 cut(s) 990, 1061, 1979, 2140, 2719, 4343
BmiI GGNNCC 3 cut(s) 992, 1329, 1346
BmrFI CCNGG 8 cut(s) 1983, 2062, 2541, 2765, 2775, 3078, 3957, 4347
BpiI GAAGAC 4 cut(s) 2577, 3275, 3641, 3905
BpmI CTGGAG 3 cut(s) 6, 4008, 4373
Bpu10I CCTNAGC 1 cut(s) 2169
Bpu14I TTCGAA 1 cut(s) 2808
BpuMI CCSGG 1 cut(s) 2062
Bsa29I ATCGAT 1 cut(s) 3297
BsaBI GATNNNNATC 9 cut(s) 267, 273, 522, 528, 777, 783, 1929, 2373, 4113
BsaHI GRCGYC 1 cut(s) 3229
BsaI GGTCTC 2 cut(s) 2568, 3530
BsaJI CCNNGG 4 cut(s) 1982, 2617, 2774, 3013
BsaXI ACNNNNNCTCC 2 cut(s) 1860, 1890
Bsc4I CCNNNNNNNGG 8 cut(s) 251, 506, 761, 2232, 2273, 2420, 2623, 3521
Bse1I ACTGG 4 cut(s) 353, 608, 863, 1976
Bse8I GATNNNNATC 9 cut(s) 267, 273, 522, 528, 777, 783, 1929, 2373, 4113
BseBI CCWGG 7 cut(s) 1983, 2541, 2765, 2775, 3078, 3957, 4347
BseCI ATCGAT 1 cut(s) 3297
BseDI CCNNGG 4 cut(s) 1982, 2617, 2774, 3013
BseJI GATNNNNATC 9 cut(s) 267, 273, 522, 528, 777, 783, 1929, 2373, 4113
BseLI CCNNNNNNNGG 8 cut(s) 251, 506, 761, 2232, 2273, 2420, 2623, 3521
BseMII CTCAG 5 cut(s) 2183, 3224, 3542, 3963, 4254
BseNI ACTGG 4 cut(s) 353, 608, 863, 1976
BseRI GAGGAG 3 cut(s) 701, 1208, 1698
BseSI GKGCMC 1 cut(s) 1405
BseXI GCAGC 5 cut(s) 900, 962, 1441, 2163, 4005
BseYI CCCAGC 1 cut(s) 2505
BsgI GTGCAG 1 cut(s) 3250
Bsh1236I CGCG 3 cut(s) 124, 1027, 1072
BshFI GGCC 9 cut(s) 991, 1063, 1791, 2733, 2773, 3240, 4230, 4238, 4345
BshNI GGYRCC 1 cut(s) 1344
BshVI ATCGAT 1 cut(s) 3297
BsiHKAI GWGCWC 2 cut(s) 1368, 4089
BsiHKCI CYCGRG 1 cut(s) 3146
BsiSI CCGG 1 cut(s) 2061
BslFI GGGAC 1 cut(s) 2104
BslI CCNNNNNNNGG 8 cut(s) 251, 506, 761, 2232, 2273, 2420, 2623, 3521
BsmBI CGTCTC 1 cut(s) 1179
BsmFI GGGAC 1 cut(s) 2104
BsmI GAATGC 2 cut(s) 181, 436
BsnI GGCC 9 cut(s) 991, 1063, 1791, 2733, 2773, 3240, 4230, 4238, 4345
Bso31I GGTCTC 2 cut(s) 2568, 3530
BsoBI CYCGRG 1 cut(s) 3146
Bsp119I TTCGAA 1 cut(s) 2808
Bsp1286I GDGCHC 4 cut(s) 1368, 1405, 2226, 4089
BspANI GGCC 9 cut(s) 991, 1063, 1791, 2733, 2773, 3240, 4230, 4238, 4345
BspCNI CTCAG 5 cut(s) 2182, 3225, 3543, 3964, 4253
BspDI ATCGAT 1 cut(s) 3297
BspFNI CGCG 3 cut(s) 124, 1027, 1072
BspHI TCATGA 1 cut(s) 2566
BspLI GGNNCC 3 cut(s) 992, 1329, 1346
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 6 cut(s) 352, 607, 965, 1016, 1938, 2382
BspT104I TTCGAA 1 cut(s) 2808
BspT107I GGYRCC 1 cut(s) 1344
BspTNI GGTCTC 2 cut(s) 2568, 3530
BsrI ACTGG 4 cut(s) 353, 608, 863, 1976
BssECI CCNNGG 4 cut(s) 1982, 2617, 2774, 3013
BssNAI GTATAC 1 cut(s) 4189
BssNI GRCGYC 1 cut(s) 3229
BssSI CACGAG 1 cut(s) 4269
BssT1I CCWWGG 2 cut(s) 2617, 3013
Bst1107I GTATAC 1 cut(s) 4189
Bst2BI CACGAG 1 cut(s) 4269
Bst2UI CCWGG 7 cut(s) 1983, 2541, 2765, 2775, 3078, 3957, 4347
Bst4CI ACNGT 4 cut(s) 32, 905, 2475, 4307
Bst6I CTCTTC 6 cut(s) 161, 416, 671, 3711, 4168, 4215
BstACI GRCGYC 1 cut(s) 3229
BstAPI GCANNNNNTGC 1 cut(s) 2488
BstBI TTCGAA 1 cut(s) 2808
BstC8I GCNNGC 5 cut(s) 1704, 3512, 4203, 4232, 4236
BstFNI CGCG 3 cut(s) 124, 1027, 1072
BstH2I RGCGCY 1 cut(s) 1703
BstHHI GCGC 3 cut(s) 126, 1074, 1702
BstMWI GCNNNNNNNGC 6 cut(s) 1024, 1069, 1451, 2488, 3237, 3676
BstNI CCWGG 7 cut(s) 1983, 2541, 2765, 2775, 3078, 3957, 4347
BstNSI RCATGY 1 cut(s) 3455
BstSCI CCNGG 8 cut(s) 1981, 2060, 2539, 2763, 2773, 3076, 3955, 4345
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 1405
BstUI CGCG 3 cut(s) 124, 1027, 1072
BstV1I GCAGC 5 cut(s) 900, 962, 1441, 2163, 4005
BstV2I GAAGAC 4 cut(s) 2577, 3275, 3641, 3905
BstX2I RGATCY 5 cut(s) 344, 599, 1021, 2789, 2971
BstYI RGATCY 5 cut(s) 344, 599, 1021, 2789, 2971
BstZ17I GTATAC 1 cut(s) 4189
Bsu15I ATCGAT 1 cut(s) 3297
BsuI GTATCC 3 cut(s) 1662, 2923, 3755
BsuRI GGCC 9 cut(s) 991, 1063, 1791, 2733, 2773, 3240, 4230, 4238, 4345
BsuTUI ATCGAT 1 cut(s) 3297
BtgZI GCGATG 1 cut(s) 1042
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 5 cut(s) 1704, 3512, 4203, 4232, 4236
CaiI CAGNNNCTG 1 cut(s) 2176
CciI TCATGA 1 cut(s) 2566
CfoI GCGC 3 cut(s) 126, 1074, 1702
Cfr13I GGNCC 6 cut(s) 990, 1061, 1979, 2140, 2719, 4343
ClaI ATCGAT 1 cut(s) 3297
CseI GACGC 3 cut(s) 3158, 3237, 3835
Csp6I GTAC 7 cut(s) 1008, 1036, 1655, 3644, 3771, 4076, 4287
CviQI GTAC 7 cut(s) 1008, 1036, 1655, 3644, 3771, 4076, 4287
DraI TTTAAA 2 cut(s) 2100, 4333
EaeI YGGCCR 1 cut(s) 4228
Eam1104I CTCTTC 6 cut(s) 161, 416, 671, 3711, 4168, 4215
EarI CTCTTC 6 cut(s) 161, 416, 671, 3711, 4168, 4215
Ecl136II GAGCTC 1 cut(s) 1366
Eco130I CCWWGG 2 cut(s) 2617, 3013
Eco147I AGGCCT 1 cut(s) 2733
Eco24I GRGCYC 2 cut(s) 1368, 2226
Eco31I GGTCTC 2 cut(s) 2568, 3530
Eco47I GGWCC 3 cut(s) 1979, 2140, 2719
Eco47III AGCGCT 1 cut(s) 1701
Eco53kI GAGCTC 1 cut(s) 1366
Eco57I CTGAAG 4 cut(s) 2276, 3639, 3917, 4181
Eco88I CYCGRG 1 cut(s) 3146
EcoICRI GAGCTC 1 cut(s) 1366
EcoRI GAATTC 1 cut(s) 3141
EcoRII CCWGG 7 cut(s) 1981, 2539, 2763, 2773, 3076, 3955, 4345
EcoT14I CCWWGG 2 cut(s) 2617, 3013
EcoT22I ATGCAT 4 cut(s) 1283, 2484, 3341, 3799
EcoT38I GRGCYC 2 cut(s) 1368, 2226
ErhI CCWWGG 2 cut(s) 2617, 3013
Esp3I CGTCTC 1 cut(s) 1179
FaqI GGGAC 1 cut(s) 2104
FblI GTMKAC 1 cut(s) 4188
Fnu4HI GCNGC 7 cut(s) 889, 951, 989, 1343, 1455, 2177, 4019
FriOI GRGCYC 2 cut(s) 1368, 2226
Fsp4HI GCNGC 7 cut(s) 889, 951, 989, 1343, 1455, 2177, 4019
FspBI CTAG 4 cut(s) 696, 1793, 2312, 2393
GlaI GCGC 3 cut(s) 125, 1073, 1701
GluI GCNGC 7 cut(s) 889, 951, 989, 1343, 1455, 2177, 4019
GsaI CCCAGC 1 cut(s) 2509
GsuI CTGGAG 3 cut(s) 6, 4008, 4373
HaeII RGCGCY 1 cut(s) 1703
HaeIII GGCC 9 cut(s) 991, 1063, 1791, 2733, 2773, 3240, 4230, 4238, 4345
HapII CCGG 1 cut(s) 2061
HgaI GACGC 3 cut(s) 3158, 3237, 3835
HhaI GCGC 3 cut(s) 126, 1074, 1702
Hin1I GRCGYC 1 cut(s) 3229
Hin6I GCGC 3 cut(s) 124, 1072, 1700
HinP1I GCGC 3 cut(s) 124, 1072, 1700
HincII GTYRAC 2 cut(s) 1579, 3429
HindII GTYRAC 2 cut(s) 1579, 3429
HindIII AAGCTT 3 cut(s) 1710, 3029, 3677
HpaII CCGG 1 cut(s) 2061
HphI GGTGA 8 cut(s) 266, 521, 776, 1215, 1742, 3581, 4238, 4369
Hpy166II GTNNAC 4 cut(s) 1579, 2719, 3429, 4189
Hpy8I GTNNAC 4 cut(s) 1579, 2719, 3429, 4189
Hpy99I CGWCG 3 cut(s) 2523, 3194, 3990
HpyCH4III ACNGT 4 cut(s) 32, 905, 2475, 4307
HpyCH4IV ACGT 5 cut(s) 2032, 2055, 2548, 3646, 3693
HpyF10VI GCNNNNNNNGC 6 cut(s) 1024, 1069, 1451, 2488, 3237, 3676
HpySE526I ACGT 5 cut(s) 2032, 2055, 2548, 3646, 3693
Hsp92I GRCGYC 1 cut(s) 3229
HspAI GCGC 3 cut(s) 124, 1072, 1700
LmnI GCTCC 5 cut(s) 688, 1327, 1868, 1986, 3575
Lsp1109I GCAGC 5 cut(s) 900, 962, 1441, 2163, 4005
MaeI CTAG 4 cut(s) 696, 1793, 2312, 2393
MaeII ACGT 5 cut(s) 2032, 2055, 2548, 3646, 3693
MfeI CAATTG 5 cut(s) 1188, 1530, 2244, 3222, 3841
MflI RGATCY 5 cut(s) 344, 599, 1021, 2789, 2971
MhlI GDGCHC 4 cut(s) 1368, 1405, 2226, 4089
MlsI TGGCCA 1 cut(s) 4230
MluNI TGGCCA 1 cut(s) 4230
MlyI GAGTC 7 cut(s) 101, 693, 1205, 1311, 2534, 2754, 3079
MmeI TCCRAC 3 cut(s) 70, 105, 1917
Mox20I TGGCCA 1 cut(s) 4230
Mph1103I ATGCAT 4 cut(s) 1283, 2484, 3341, 3799
MroXI GAANNNNTTC 2 cut(s) 2514, 3939
MscI TGGCCA 1 cut(s) 4230
Msp20I TGGCCA 1 cut(s) 4230
MspA1I CMGCKG 1 cut(s) 4234
MspI CCGG 1 cut(s) 2061
MspR9I CCNGG 8 cut(s) 1983, 2062, 2541, 2765, 2775, 3078, 3957, 4347
MunI CAATTG 5 cut(s) 1188, 1530, 2244, 3222, 3841
Mva1269I GAATGC 2 cut(s) 181, 436
MvaI CCWGG 7 cut(s) 1983, 2541, 2765, 2775, 3078, 3957, 4347
MvnI CGCG 3 cut(s) 124, 1027, 1072
MwoI GCNNNNNNNGC 6 cut(s) 1024, 1069, 1451, 2488, 3237, 3676
NciI CCSGG 1 cut(s) 2062
NlaIV GGNNCC 3 cut(s) 992, 1329, 1346
NmuCI GTSAC 7 cut(s) 34, 254, 509, 764, 1264, 2380, 2840
NsiI ATGCAT 4 cut(s) 1283, 2484, 3341, 3799
NspI RCATGY 1 cut(s) 3455
NspV TTCGAA 1 cut(s) 2808
PagI TCATGA 1 cut(s) 2566
PceI AGGCCT 1 cut(s) 2733
PctI GAATGC 2 cut(s) 181, 436
PdmI GAANNNNTTC 2 cut(s) 2514, 3939
PflFI GACNNNGTC 1 cut(s) 702
PflMI CCANNNNNTGG 2 cut(s) 2232, 2623
PfoI TCCNGGA 2 cut(s) 2763, 3955
PkrI GCNGC 7 cut(s) 890, 952, 990, 1344, 1456, 2178, 4020
PleI GAGTC 7 cut(s) 101, 693, 1204, 1310, 2533, 2754, 3078
PpsI GAGTC 7 cut(s) 101, 693, 1204, 1310, 2533, 2754, 3078
PshBI ATTAAT 1 cut(s) 3110
Psp124BI GAGCTC 1 cut(s) 1368
Psp1406I AACGTT 1 cut(s) 2055
Psp6I CCWGG 7 cut(s) 1981, 2539, 2763, 2773, 3076, 3955, 4345
PspFI CCCAGC 1 cut(s) 2505
PspGI CCWGG 7 cut(s) 1981, 2539, 2763, 2773, 3076, 3955, 4345
PspN4I GGNNCC 3 cut(s) 992, 1329, 1346
PspPI GGNCC 6 cut(s) 990, 1061, 1979, 2140, 2719, 4343
PstI CTGCAG 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 2176
PsuI RGATCY 5 cut(s) 344, 599, 1021, 2789, 2971
PsyI GACNNNGTC 1 cut(s) 702
PvuII CAGCTG 1 cut(s) 4234
RsaI GTAC 7 cut(s) 1009, 1037, 1656, 3645, 3772, 4077, 4288
RsaNI GTAC 7 cut(s) 1008, 1036, 1655, 3644, 3771, 4076, 4287
SacI GAGCTC 1 cut(s) 1368
SatI GCNGC 7 cut(s) 889, 951, 989, 1343, 1455, 2177, 4019
Sau96I GGNCC 6 cut(s) 990, 1061, 1979, 2140, 2719, 4343
SchI GAGTC 7 cut(s) 101, 693, 1205, 1311, 2534, 2754, 3079
ScrFI CCNGG 8 cut(s) 1983, 2062, 2541, 2765, 2775, 3078, 3957, 4347
SduI GDGCHC 4 cut(s) 1368, 1405, 2226, 4089
SfcI CTRYAG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 2808
SinI GGWCC 3 cut(s) 1979, 2140, 2719
SseBI AGGCCT 1 cut(s) 2733
SspI AATATT 3 cut(s) 2334, 2851, 3967
SspMI CTAG 4 cut(s) 696, 1793, 2312, 2393
SstI GAGCTC 1 cut(s) 1368
StuI AGGCCT 1 cut(s) 2733
StyD4I CCNGG 8 cut(s) 1981, 2060, 2539, 2763, 2773, 3076, 3955, 4345
StyI CCWWGG 2 cut(s) 2617, 3013
TaaI ACNGT 4 cut(s) 32, 905, 2475, 4307
TaiI ACGT 5 cut(s) 2035, 2058, 2551, 3649, 3696
TaqI TCGA 7 cut(s) 2521, 2808, 3003, 3189, 3297, 3792, 3988
TaqII GACCGA 1 cut(s) 1967
TatI WGTACW 2 cut(s) 3770, 4075
TauI GCSGC 2 cut(s) 991, 1345
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 7 cut(s) 34, 254, 509, 764, 1264, 2380, 2840
TseI GCWGC 5 cut(s) 888, 950, 1454, 2176, 4018
Tsp45I GTSAC 7 cut(s) 34, 254, 509, 764, 1264, 2380, 2840
TspGWI ACGGA 6 cut(s) 182, 437, 1126, 1595, 1847, 2772
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 702
Van91I CCANNNNNTGG 2 cut(s) 2232, 2623
VpaK11BI GGWCC 3 cut(s) 1979, 2140, 2719
VspI ATTAAT 1 cut(s) 3110
XapI RAATTY 7 cut(s) 1498, 2154, 2680, 2878, 3141, 3590, 4126
XbaI TCTAGA 2 cut(s) 695, 2311
XceI RCATGY 1 cut(s) 3455
XmiI GTMKAC 1 cut(s) 4188
XmnI GAANNNNTTC 2 cut(s) 2514, 3939
XspI CTAG 4 cut(s) 696, 1793, 2312, 2393
Zsp2I ATGCAT 4 cut(s) 1283, 2484, 3341, 3799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.