RchiOBHm_Chr6g0250501

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000105
Physical Location & Seq
Forward (+)
5995742 .. 5996953
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22455

Sequence Viewer

Length: 1047 bp
ATGATAGGGATCCATGGAATGCGGGGAATAGGTAAGACGGCAATTGCCCGAGCTCTTTATGATCAACTTCGTCAAGATTCTGACAGTAGCTGCGAGCCTTCCAATGTTAGAGAAGTGTTTAGCAAAGGTGGTATATATCCTTCACAGTATGAAATTAGTGACTGTTTTGACCATTGCTGCTTTCTTTCCAACGTTAGAGAAATGTCAAAAAAAGATGGTCTAGTTTCTCTTCAAGAAAAACTTCTTTCCAGAGTCTTGAGGGCAACAATTAGGAACATAGAGGATGAATATGCTGGAGCGAATATGATACAAAGACGATTAGGTAAATTAAGGGTGCTGGTTGTTATTGATGATGTGGATCAAGTGGCACAATTAGAATGTTTGGCTGGAAATCATGACTGGTTCGGTCCGGGAAGTAGAATTATCATAACCAGTGCTGATGTTCATTTGTTGAATTGTGTAGATACTCTATACGAGGCTGCTGTGTTAACCCATGATGAAGCTCTTCAACTTTTGAGTTTAAAGGCTTTTAAGAAAAACCCCCCGCCTGAAGATTACTTGGAGCTATGCAACAATATTTTAGGGTATGCTCATGGGCTCCCATTAGTTCTTGTGGTTATAGGTCCATTTCTATGTGGTAGATCGATCAATGAATGGAAGAGTGCAATCGATAGGCTCAGGAATAAACCAGAAATTAGCATCGTTGATGTGCTTCAGATAAGTTTTGATGGGCTAAGGGAAACAGAAAAAGAAATTTTCCTACATGTCGCTTGCTTTTATGTGGGGAAGGATAGGGATCGTGTATCAGAAATACTAGATTATTGTCAGCTTTACCCTCACATTGGTTTAAGTGTTCTTGCTGATAAATCTCTCATTACTATTTCCAACAACAAACTATCCATGCATGCTTTGCTACAAGAAATGGGCTGGGAGATAGTTCGTAGGGAGTCGCCTAAACCAGGCAGGCGTACTAGATTATGGTCTCATGAAGACATCCACAATGTGCTGAAAAAAATAAGGGAACAGAAGCAGTTCAAGGCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

348

Amino Acids

39.57

Weight (kDa)

6.6

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 49 - 180 1.8e-09 NB-ARC domain
WHD_ROQ1 PF23282 247 - 317 1e-20 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 545
AclI AACGTT 1 cut(s) 192
AclWI GGATC 4 cut(s) 4, 17, 366, 804
AcsI RAATTY 1 cut(s) 753
AcuI CTGAAG 2 cut(s) 570, 698
AdeI CACNNNGTG 1 cut(s) 1003
AfaI GTAC 1 cut(s) 970
AfiI CCNNNNNNNGG 2 cut(s) 842, 959
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 4 cut(s) 233, 454, 509, 1036
AjnI CCWGG 1 cut(s) 958
AluBI AGCT 5 cut(s) 53, 90, 503, 565, 829
AluI AGCT 5 cut(s) 53, 90, 503, 565, 829
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 4 cut(s) 4, 17, 366, 804
AlwNI CAGNNNCTG 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 90, 177, 479
ApoI RAATTY 1 cut(s) 753
Asp700I GAANNNNTTC 3 cut(s) 240, 504, 1031
AspS9I GGNCC 2 cut(s) 407, 623
AsuC2I CCSGG 1 cut(s) 411
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 2 cut(s) 407, 623
BamHI GGATCC 1 cut(s) 9
BanII GRGCYC 2 cut(s) 55, 600
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 3 cut(s) 77, 164, 466
BccI CCATC 2 cut(s) 209, 722
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 3 cut(s) 221, 815, 972
BisI GCNGC 3 cut(s) 91, 178, 480
BlsI GCNGC 3 cut(s) 92, 179, 481
Bme1390I CCNGG 2 cut(s) 411, 960
Bme18I GGWCC 2 cut(s) 407, 623
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 407, 623
BmiI GGNNCC 2 cut(s) 11, 599
BmrFI CCNGG 2 cut(s) 411, 960
BmsI GCATC 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 996
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 2 cut(s) 677, 734
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 411
Bsa29I ATCGAT 2 cut(s) 644, 669
BsaBI GATNNNNATC 3 cut(s) 8, 357, 795
BsaI GGTCTC 1 cut(s) 987
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 842, 959
Bse1I ACTGG 2 cut(s) 404, 432
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 3 cut(s) 8, 357, 795
BseBI CCWGG 1 cut(s) 960
BseCI ATCGAT 2 cut(s) 644, 669
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 289, 993
BseJI GATNNNNATC 3 cut(s) 8, 357, 795
BseLI CCNNNNNNNGG 2 cut(s) 842, 959
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 691
BseNI ACTGG 2 cut(s) 404, 432
BseXI GCAGC 3 cut(s) 77, 164, 466
BseYI CCCAGC 1 cut(s) 927
BshVI ATCGAT 2 cut(s) 644, 669
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 842, 959
BsmAI GTCTC 1 cut(s) 987
BsmI GAATGC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 987
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 55, 600
Bsp143I GATC 6 cut(s) 9, 61, 358, 641, 645, 796
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 2 cut(s) 22, 545
BspCNI CTCAG 1 cut(s) 690
BspDI ATCGAT 2 cut(s) 644, 669
BspHI TCATGA 2 cut(s) 394, 985
BspLI GGNNCC 2 cut(s) 11, 599
BspPI GGATC 4 cut(s) 4, 17, 366, 804
BspQI GCTCTTC 1 cut(s) 510
BspTNI GGTCTC 1 cut(s) 987
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 404, 432
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 6 cut(s) 9, 61, 358, 641, 645, 796
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 3 cut(s) 86, 147, 164
Bst6I CTCTTC 3 cut(s) 234, 510, 653
BstAPI GCANNNNNTGC 1 cut(s) 910
BstC8I GCNNGC 4 cut(s) 95, 772, 906, 965
BstDEI CTNAG 2 cut(s) 677, 734
BstDSI CCRYGG 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 957
BstF5I GGATG 2 cut(s) 289, 993
BstKTI GATC 6 cut(s) 12, 64, 361, 644, 648, 799
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 6 cut(s) 9, 61, 358, 641, 645, 796
BstMWI GCNNNNNNNGC 1 cut(s) 910
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 2 cut(s) 767, 908
BstSCI CCNGG 2 cut(s) 409, 958
BstV1I GCAGC 3 cut(s) 77, 164, 466
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
Bsu15I ATCGAT 2 cut(s) 644, 669
BsuTUI ATCGAT 2 cut(s) 644, 669
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 289, 993
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 4 cut(s) 95, 772, 906, 965
CaiI CAGNNNCTG 1 cut(s) 90
CciI TCATGA 2 cut(s) 394, 985
Cfr13I GGNCC 2 cut(s) 407, 623
ClaI ATCGAT 2 cut(s) 644, 669
CpoI CGGWCCG 1 cut(s) 407
Csp6I GTAC 1 cut(s) 969
CspI CGGWCCG 1 cut(s) 407
CviAII CATG 9 cut(s) 14, 395, 494, 593, 764, 901, 905, 986, 1041
CviQI GTAC 1 cut(s) 969
DdeI CTNAG 2 cut(s) 677, 734
DpnI GATC 6 cut(s) 11, 63, 360, 643, 647, 798
DpnII GATC 6 cut(s) 9, 61, 358, 641, 645, 796
DraI TTTAAA 1 cut(s) 522
DraIII CACNNNGTG 1 cut(s) 1003
Eam1104I CTCTTC 3 cut(s) 234, 510, 653
EarI CTCTTC 3 cut(s) 234, 510, 653
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 55, 600
Eco31I GGTCTC 1 cut(s) 987
Eco47I GGWCC 2 cut(s) 407, 623
Eco53kI GAGCTC 1 cut(s) 53
Eco57I CTGAAG 2 cut(s) 570, 698
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 958
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 906
EcoT38I GRGCYC 2 cut(s) 55, 600
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 9 cut(s) 17, 398, 497, 596, 767, 904, 908, 989, 1044
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 9 cut(s) 13, 394, 493, 592, 763, 900, 904, 985, 1040
FauI CCCGC 2 cut(s) 15, 552
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 91, 178, 480
FokI GGATG 2 cut(s) 296, 980
FriOI GRGCYC 2 cut(s) 55, 600
Fsp4HI GCNGC 3 cut(s) 91, 178, 480
FspBI CTAG 3 cut(s) 221, 815, 972
GluI GCNGC 3 cut(s) 91, 178, 480
GsaI CCCAGC 1 cut(s) 931
GsuI CTGGAG 1 cut(s) 315
HapII CCGG 1 cut(s) 410
Hin1II CATG 9 cut(s) 17, 398, 497, 596, 767, 904, 908, 989, 1044
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 3 cut(s) 77, 252, 947
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 3 cut(s) 82, 717, 808
Hpy188III TCNNGA 7 cut(s) 74, 233, 249, 256, 395, 679, 986
Hpy8I GTNNAC 1 cut(s) 489
HpyAV CCTTC 3 cut(s) 108, 150, 781
HpyCH4III ACNGT 3 cut(s) 86, 147, 164
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 570, 665, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 910
HpyF3I CTNAG 2 cut(s) 677, 734
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 9 cut(s) 17, 398, 497, 596, 767, 904, 908, 989, 1044
Ksp22I TGATCA 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 6 cut(s) 9, 61, 358, 641, 645, 796
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 3 cut(s) 296, 562, 603
Lsp1109I GCAGC 3 cut(s) 77, 164, 466
LweI GCATC 1 cut(s) 708
MaeI CTAG 3 cut(s) 221, 815, 972
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 158
MalI GATC 6 cut(s) 11, 63, 360, 643, 647, 798
MboI GATC 6 cut(s) 9, 61, 358, 641, 645, 796
MboII GAAGA 5 cut(s) 221, 497, 563, 670, 1001
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 2 cut(s) 55, 600
MluCI AATT 9 cut(s) 42, 153, 267, 326, 371, 420, 454, 693, 753
MlyI GAGTC 2 cut(s) 261, 956
MmeI TCCRAC 2 cut(s) 213, 909
MnlI CCTC 4 cut(s) 252, 274, 469, 846
Mph1103I ATGCAT 1 cut(s) 906
MroXI GAANNNNTTC 3 cut(s) 240, 504, 1031
MseI TTAA 5 cut(s) 329, 488, 521, 531, 848
MslI CAYNNNNRTG 1 cut(s) 631
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 2 cut(s) 411, 960
MunI CAATTG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 1 cut(s) 960
MwoI GCNNNNNNNGC 1 cut(s) 910
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 13
NdeII GATC 6 cut(s) 9, 61, 358, 641, 645, 796
NlaIII CATG 9 cut(s) 17, 398, 497, 596, 767, 904, 908, 989, 1044
NlaIV GGNNCC 2 cut(s) 11, 599
NmuCI GTSAC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 906
NspI RCATGY 2 cut(s) 767, 908
PaeI GCATGC 1 cut(s) 908
PagI TCATGA 2 cut(s) 394, 985
PciI ACATGT 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 510
PctI GAATGC 1 cut(s) 24
PdmI GAANNNNTTC 3 cut(s) 240, 504, 1031
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 3 cut(s) 92, 179, 481
PleI GAGTC 2 cut(s) 260, 955
PpsI GAGTC 2 cut(s) 260, 955
PscI ACATGT 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 55
Psp1406I AACGTT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 958
PspFI CCCAGC 1 cut(s) 927
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 2 cut(s) 11, 599
PspPI GGNCC 2 cut(s) 407, 623
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 1 cut(s) 970
RsaNI GTAC 1 cut(s) 969
RseI CAYNNNNRTG 1 cut(s) 631
Rsr2I CGGWCCG 1 cut(s) 407
RsrII CGGWCCG 1 cut(s) 407
SacI GAGCTC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 5 cut(s) 329, 488, 521, 531, 848
SatI GCNGC 3 cut(s) 91, 178, 480
Sau3AI GATC 6 cut(s) 9, 61, 358, 641, 645, 796
Sau96I GGNCC 2 cut(s) 407, 623
SchI GAGTC 2 cut(s) 261, 956
ScrFI CCNGG 2 cut(s) 411, 960
SduI GDGCHC 2 cut(s) 55, 600
SfaNI GCATC 1 cut(s) 708
SinI GGWCC 2 cut(s) 407, 623
SmiMI CAYNNNNRTG 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
SphI GCATGC 1 cut(s) 908
Sse9I AATT 9 cut(s) 42, 153, 267, 326, 371, 420, 454, 693, 753
SsiI CCGC 2 cut(s) 22, 545
SspI AATATT 1 cut(s) 577
SspMI CTAG 3 cut(s) 221, 815, 972
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 409, 958
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 86, 147, 164
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 644, 669
TaqII GACCGA 1 cut(s) 395
TasI AATT 9 cut(s) 42, 153, 267, 326, 371, 420, 454, 693, 753
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 5 cut(s) 329, 488, 521, 531, 848
Tru9I TTAA 5 cut(s) 329, 488, 521, 531, 848
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 3 cut(s) 90, 177, 479
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 6 cut(s) 165, 300, 434, 513, 666, 1002
TspRI CASTG 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 407, 623
XagI CCTNNNNNAGG 1 cut(s) 957
XapI RAATTY 1 cut(s) 753
XceI RCATGY 2 cut(s) 767, 908
XmnI GAANNNNTTC 3 cut(s) 240, 504, 1031
XspI CTAG 3 cut(s) 221, 815, 972
Zsp2I ATGCAT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.