Rmu_sc0002634.1_g000017

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002634.1
OG0000105
Physical Location & Seq
Reverse (-)
87667 .. 91440
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002634.1_g000017.1.cds

Sequence Viewer

Length: 3312 bp
atgcttcttcgtcatggtgtttggatgggccaacaattcctccccgtcttctacgacggcgtggttccttctgatgtgcggcacccaaagggaagttttgagctccaagtaagggaaccccaagtacaagtaagggaacacgaagaagtttattggaagaatgaggacagactaaatgcctggagagctgctttgactgaggtcgccaatctttctggctgggattgcaggaataaatctgaatcaactttaattcaggaaattgtttatcatatactaaagaagtccgtgtatacatcttcaagtgttgacaagggcttcataggaatggattcccgcattgatgatatattaagcaatttcatatatccgcagcttggtggggtggtgcgttttatagggatccatggcatgcggggcataggtaagacaacacttgctcgagctatctatgatgaaatttgtcaggatttcgaccaaagctactttctttccaatgttcgagaaatgtctaaaaacaatggcctagtttctctacaagaaaaacttctttccagaatcctgatggcaaaaattgaaaatatagaggatgaatacacaggagctgctatgatacaaaggcggttgcgtagaataaaggtgcttgtggttattgatgatgtggatcagttgacacaattagagaaattggctggaagtcgcaactggtttggtcctgggagtagaattatcataaccaccacagatattcagttattaaaggcgcatgatgttgatgctctatacaaggctaatgtgttaaactatgctgaagcacttcaacttttgagtttgaaggcttttaagagatgtcccccaccagaagattatttgcatctgtgcgaccatattttagagtatgctcaggggcttccgttggctctcgtggtgttaggttcctttctatctggtagaggggctgataaatgggcaagcgcaatagataggctaaggagcacaccagataaagacattattgatgtgcttcggattagttttgatgacctgcataaaaaagagagagaaatattcctacatattgcatgcttttacaagggaaaggataaggatcgtgtgacacaaatactagaatattgccagctagaacctgtcattggtttagatgttcttgttgatagatctctcataactatctccaacaacaaactgtcaatgcatgatttgctacaagaaatgggctgggaaattgttcgtgaacagtctcctaatgagccaggcaaacgtagtagattatggtctcatgaagacatcaacaatgtgctgaagagacataagggaacagattcaatccaaggcattgtaatggagttgactaaattacaagtgactcattggaatccagaagccttttcaaatttatctcaacttattcttctccatattcgtaatgtggaccttcctgaaggcctcacttgtcttccaaattccttgagactcctggaatggactgggtatcccttaagatctctcccacaaaactttgaagcagatgatctcattgaacttaacctgtgccagagcaacattgcatatctttggaatggaacaaagaattttgacaggttgaagttcatcaaactctgccactctcaaaacattgtggagaccccagacctcacaggcgttcggaatcttgagagtttagatcttgaaggatgtgagaatttggtaagaatccataaatcccttggatttctcaaaaatcttattgtcgtgaatcttaaagactgcaaaagtctcaagactctgccaagtagaattgaaatggaatctcttgaaacattagttctttctaactgctcaaaaattaagaagattcccgagtttgttggaaatatggaacgtttgtcggtactttatcttgatgagactgccattgaggaactgcctgtgtcaattgaaaggttgagtggcctggtgtcattgaatctgagcaactgcagaaatcttgctcatcttccgagtaccatcaataaattgaagtctattagaaatcttaatctttctggatgcttgaaacttggcaaacatcaagtaaatgtgtgggagatggactgttttgtggaaaatgatgtgaatagtgggtctgcagtagaaatgtcatctacccatgatctcataaaatatgtgagaggttcagtctttcgtggatgcgaagtagtttggggatctgtaaataagttcttgccttctggattggtgcaaaaagtgaatacagagccaatgagttaccgcttgcctatatttggtctgtgtaatttaacatatctgaacctgagtaattgcaatcttggtgaaggagcatttgccaacgaatttgattactttccctctttggtgaccttgaatctaagtggaaacaattttattcgtcttccttctggcattagattgctttctaagcttgagaatttcaacttggagaattgcaagagacttcaagagttgtcagaccttccatcaaatagtatactagatttaaaggcagatggttgtacttcactgaaatacctgtttgatgcatcaagtttgaacggattaaacaaatcatatttcaatttcatcaattgcttcaagctaaatggcaatcaaggatgcaataacatagcatttgaaatgctgaagacattcatgtatcagggaatctctaataagagggaaacttttcatatggtaattccaggaagtaatattcctgagtggttcagccatcggagtgttgggtgttcattaagtatgggacctgcatgcttagatgaagttttgggatttgctttatgtgctgtttttgtactccatgagcaccatccagtggataagctttatatggatgaattcaagacttttaatgcaacacatcatcttgtatgttgcctgaagttcaatggaatagaattggaagtatatggcacacagcctgcatttcgctttagtgaagaattttgccaggttgaatcagatcacctgtggctattctatgtatctagtgataagtactttggtacagagaggtggcgtaactgttacggtcagtttgagttcttatttgaaaccagagggccgggtctgatggtgagggagtgtggagtccgtctgatatatgaggaagatgtgcaagtgttgaaccaaacaaccactcaatcaagcagcaggatgtctccttatgaggatatattgattggttttgacattccagttgcaggggaaaccagtgctactggtagcagaacttgcacgcttgaagaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1103

Amino Acids

125.48

Weight (kDa)

5.85

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1053, 2812
AccB1I GGYRCC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 2872
AccI GTMKAC 2 cut(s) 293, 2530
AciI CCGC 6 cut(s) 79, 337, 371, 415, 622, 2293
AclI AACGTT 1 cut(s) 1903
AclWI GGATC 5 cut(s) 397, 410, 672, 1116, 2236
AcsI RAATTY 9 cut(s) 459, 1414, 1483, 1612, 1723, 2375, 2470, 2894, 2999
AcuI CTGAAG 5 cut(s) 831, 1343, 1482, 2702, 2957
AfaI GTAC 7 cut(s) 126, 1914, 2026, 2557, 2853, 3056, 3064
AfiI CCNNNNNNNGG 6 cut(s) 112, 377, 1154, 2306, 2872, 3260
AflII CTTAAG 1 cut(s) 1519
AjnI CCWGG 7 cut(s) 179, 715, 1273, 1497, 1974, 2740, 3006
AjuI GAANNNNNNNTTGG 6 cut(s) 471, 503, 1137, 1169, 2462, 2494
Alw21I GWGCWC 3 cut(s) 105, 998, 2865
Alw26I GTCTC 9 cut(s) 1266, 1302, 1321, 1486, 1658, 1802, 1922, 2488, 3222
AlwI GGATC 5 cut(s) 397, 410, 672, 1116, 2236
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 2 cut(s) 441, 1880
AoxI GGCC 5 cut(s) 28, 523, 1465, 1972, 3119
ApeKI GCWGC 4 cut(s) 188, 373, 605, 3207
ApoI RAATTY 9 cut(s) 459, 1414, 1483, 1612, 1723, 2375, 2470, 2894, 2999
Asp700I GAANNNNTTC 7 cut(s) 331, 546, 816, 1248, 1342, 2687, 2724
AspLEI GCGC 2 cut(s) 766, 977
AspS9I GGNCC 5 cut(s) 28, 713, 1453, 2801, 3119
AsuC2I CCSGG 1 cut(s) 3123
AsuHPI GGTGA 4 cut(s) 2366, 2410, 3014, 3145
AvaI CYCGRG 2 cut(s) 441, 1880
AvaII GGWCC 3 cut(s) 713, 1453, 2801
BamHI GGATCC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 923
BbsI GAAGAC 5 cut(s) 40, 1311, 1469, 2426, 2690
Bbv12I GWGCWC 3 cut(s) 105, 998, 2865
BbvI GCAGC 4 cut(s) 175, 385, 592, 3219
BccI CCATC 9 cut(s) 19, 559, 2036, 2104, 2527, 2543, 2778, 2874, 3124
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 7 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008
BciVI GTATCC 1 cut(s) 1524
BcnI CCSGG 1 cut(s) 3123
BcoDI GTCTC 9 cut(s) 1266, 1302, 1321, 1486, 1658, 1802, 1922, 2488, 3222
BfaI CTAG 5 cut(s) 527, 1127, 1142, 2534, 3045
BfmI CTRYAG 2 cut(s) 1999, 2148
BfrI CTTAAG 1 cut(s) 1519
BfuAI ACCTGC 2 cut(s) 1053, 2812
BfuI GTATCC 1 cut(s) 1524
BglII AGATCT 3 cut(s) 1178, 1523, 1705
BisI GCNGC 5 cut(s) 80, 189, 374, 606, 3208
BlsI GCNGC 5 cut(s) 81, 190, 375, 607, 3209
BmcAI AGTACT 1 cut(s) 3056
Bme1390I CCNGG 8 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008, 3123
Bme18I GGWCC 3 cut(s) 713, 1453, 2801
BmeT110I CYCGRG 2 cut(s) 441, 1880
BmgT120I GGNCC 5 cut(s) 28, 713, 1453, 2801, 3119
BmiI GGNNCC 6 cut(s) 66, 83, 117, 404, 937, 2802
BmrFI CCNGG 8 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008, 3123
BmrI ACTGGG 1 cut(s) 1518
BmsI GCATC 7 cut(s) 766, 883, 2060, 2201, 2569, 2591, 2645
BmuI ACTGGG 1 cut(s) 1518
BoxI GACNNNNGTC 1 cut(s) 200
BpiI GAAGAC 5 cut(s) 40, 1311, 1469, 2426, 2690
BpmI CTGGAG 1 cut(s) 202
Bpu10I CCTNAGC 2 cut(s) 903, 989
BpuEI CTTGAG 4 cut(s) 1510, 1715, 1784, 2486
BpuMI CCSGG 1 cut(s) 3123
BsaBI GATNNNNATC 2 cut(s) 663, 1107
BsaI GGTCTC 2 cut(s) 1302, 1658
BsaJI CCNNGG 4 cut(s) 406, 716, 1351, 1747
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 377, 1154, 2306, 2872, 3260
Bse1I ACTGG 6 cut(s) 710, 1513, 2870, 3254, 3270, 3283
Bse3DI GCAATG 1 cut(s) 1584
Bse8I GATNNNNATC 2 cut(s) 663, 1107
BseBI CCWGG 7 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008
BseDI CCNNGG 4 cut(s) 406, 716, 1351, 1747
BseGI GGATG 9 cut(s) 30, 595, 1721, 2075, 2216, 2660, 2866, 2896, 3219
BseJI GATNNNNATC 2 cut(s) 663, 1107
BseLI CCNNNNNNNGG 6 cut(s) 112, 377, 1154, 2306, 2872, 3260
BseMI GCAATG 1 cut(s) 1584
BseMII CTCAG 5 cut(s) 189, 917, 1982, 2327, 2748
BseNI ACTGG 6 cut(s) 710, 1513, 2870, 3254, 3270, 3283
BseXI GCAGC 4 cut(s) 175, 385, 592, 3219
BseYI CCCAGC 2 cut(s) 219, 1239
BshFI GGCC 5 cut(s) 30, 525, 1467, 1974, 3121
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 3 cut(s) 105, 998, 2865
BsiHKCI CYCGRG 2 cut(s) 441, 1880
BsiSI CCGG 1 cut(s) 3122
BslFI GGGAC 2 cut(s) 837, 2814
BslI CCNNNNNNNGG 6 cut(s) 112, 377, 1154, 2306, 2872, 3260
BsmAI GTCTC 9 cut(s) 1266, 1302, 1321, 1486, 1658, 1802, 1922, 2488, 3222
BsmFI GGGAC 2 cut(s) 837, 2814
BsnI GGCC 5 cut(s) 30, 525, 1467, 1974, 3121
Bso31I GGTCTC 2 cut(s) 1302, 1658
BsoBI CYCGRG 2 cut(s) 441, 1880
Bsp1286I GDGCHC 3 cut(s) 105, 998, 2865
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 6 cut(s) 79, 337, 371, 415, 622, 2293
BspANI GGCC 5 cut(s) 30, 525, 1467, 1974, 3121
BspCNI CTCAG 5 cut(s) 190, 916, 1983, 2328, 2749
BspHI TCATGA 1 cut(s) 1300
BspLI GGNNCC 6 cut(s) 66, 83, 117, 404, 937, 2802
BspMAI CTGCAG 2 cut(s) 2003, 2152
BspMI ACCTGC 2 cut(s) 1053, 2812
BspPI GGATC 5 cut(s) 397, 410, 672, 1116, 2236
BspT107I GGYRCC 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 1519
BspTNI GGTCTC 2 cut(s) 1302, 1658
BsrDI GCAATG 1 cut(s) 1584
BsrI ACTGG 6 cut(s) 710, 1513, 2870, 3254, 3270, 3283
BssECI CCNNGG 4 cut(s) 406, 716, 1351, 1747
BssNAI GTATAC 2 cut(s) 294, 2531
BssSI CACGAG 1 cut(s) 923
BssT1I CCWWGG 3 cut(s) 406, 1351, 1747
Bst1107I GTATAC 2 cut(s) 294, 2531
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 7 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008
Bst4CI ACNGT 5 cut(s) 1209, 1260, 2117, 3083, 3089
Bst6I CTCTTC 1 cut(s) 1319
BstAFI CTTAAG 1 cut(s) 1519
BstAPI GCANNNNNTGC 2 cut(s) 1222, 3291
BstC8I GCNNGC 8 cut(s) 413, 973, 1084, 1139, 2297, 2809, 2979, 3296
BstDEI CTNAG 9 cut(s) 198, 903, 989, 1991, 2336, 2411, 2460, 2757, 2812
BstDSI CCRYGG 1 cut(s) 406
BstEII GGTNACC 1 cut(s) 2398
BstF5I GGATG 9 cut(s) 30, 595, 1721, 2075, 2216, 2660, 2866, 2896, 3219
BstHHI GCGC 2 cut(s) 766, 977
BstMAI GTCTC 9 cut(s) 1266, 1302, 1321, 1486, 1658, 1802, 1922, 2488, 3222
BstMWI GCNNNNNNNGC 7 cut(s) 185, 225, 417, 1222, 2461, 2840, 3291
BstNI CCWGG 7 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008
BstNSI RCATGY 3 cut(s) 415, 1086, 2811
BstPAI GACNNNNGTC 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 2398
BstSCI CCNGG 8 cut(s) 179, 715, 1273, 1497, 1974, 2740, 3006, 3121
BstSFI CTRYAG 2 cut(s) 1999, 2148
BstV1I GCAGC 4 cut(s) 175, 385, 592, 3219
BstV2I GAAGAC 5 cut(s) 40, 1311, 1469, 2426, 2690
BstX2I RGATCY 5 cut(s) 402, 1178, 1523, 1705, 2228
BstYI RGATCY 5 cut(s) 402, 1178, 1523, 1705, 2228
BstZ17I GTATAC 2 cut(s) 294, 2531
BsuI GTATCC 1 cut(s) 1524
BsuRI GGCC 5 cut(s) 30, 525, 1467, 1974, 3121
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 9 cut(s) 30, 595, 1721, 2075, 2216, 2660, 2866, 2896, 3219
BtsIMutI CAGTG 3 cut(s) 2561, 2877, 3277
BveI ACCTGC 2 cut(s) 1053, 2812
Cac8I GCNNGC 8 cut(s) 413, 973, 1084, 1139, 2297, 2809, 2979, 3296
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 1300
CfoI GCGC 2 cut(s) 766, 977
Cfr13I GGNCC 5 cut(s) 28, 713, 1453, 2801, 3119
Csp6I GTAC 7 cut(s) 125, 1913, 2025, 2556, 2852, 3055, 3063
CviQI GTAC 7 cut(s) 125, 1913, 2025, 2556, 2852, 3055, 3063
DdeI CTNAG 9 cut(s) 198, 903, 989, 1991, 2336, 2411, 2460, 2757, 2812
DraI TTTAAA 1 cut(s) 2541
Eam1104I CTCTTC 1 cut(s) 1319
EarI CTCTTC 1 cut(s) 1319
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 406, 1351, 1747
Eco147I AGGCCT 1 cut(s) 1467
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 1302, 1658
Eco47I GGWCC 3 cut(s) 713, 1453, 2801
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 5 cut(s) 831, 1343, 1482, 2702, 2957
Eco88I CYCGRG 2 cut(s) 441, 1880
Eco91I GGTNACC 1 cut(s) 2398
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 2801
EcoO65I GGTNACC 1 cut(s) 2398
EcoRI GAATTC 1 cut(s) 2894
EcoRII CCWGG 7 cut(s) 179, 715, 1273, 1497, 1974, 2740, 3006
EcoT14I CCWWGG 3 cut(s) 406, 1351, 1747
EcoT22I ATGCAT 2 cut(s) 1218, 2584
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 3 cut(s) 406, 1351, 1747
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 2 cut(s) 837, 2814
FauI CCCGC 2 cut(s) 344, 408
FauNDI CATATG 1 cut(s) 2730
FblI GTMKAC 2 cut(s) 293, 2530
Fnu4HI GCNGC 5 cut(s) 80, 189, 374, 606, 3208
FokI GGATG 9 cut(s) 37, 602, 1728, 2082, 2223, 2667, 2853, 2903, 3226
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 80, 189, 374, 606, 3208
FspBI CTAG 5 cut(s) 527, 1127, 1142, 2534, 3045
GlaI GCGC 2 cut(s) 765, 976
GluI GCNGC 5 cut(s) 80, 189, 374, 606, 3208
GsaI CCCAGC 2 cut(s) 223, 1243
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 5 cut(s) 30, 525, 1467, 1974, 3121
HapII CCGG 1 cut(s) 3122
HhaI GCGC 2 cut(s) 766, 977
Hin6I GCGC 2 cut(s) 764, 975
HinP1I GCGC 2 cut(s) 764, 975
HincII GTYRAC 3 cut(s) 310, 672, 1371
HindII GTYRAC 3 cut(s) 310, 672, 1371
HindIII AAGCTT 2 cut(s) 2462, 2879
HpaII CCGG 1 cut(s) 3122
HphI GGTGA 4 cut(s) 2366, 2410, 3014, 3145
Hpy166II GTNNAC 7 cut(s) 294, 310, 672, 1256, 1371, 1453, 2531
Hpy8I GTNNAC 7 cut(s) 294, 310, 672, 1256, 1371, 1453, 2531
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 9 cut(s) 78, 829, 1457, 1466, 1706, 2259, 2351, 2448, 2525
HpyCH4III ACNGT 5 cut(s) 1209, 1260, 2117, 3083, 3089
HpyCH4IV ACGT 2 cut(s) 1282, 1903
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 225, 417, 1222, 2461, 2840, 3291
HpyF3I CTNAG 9 cut(s) 198, 903, 989, 1991, 2336, 2411, 2460, 2757, 2812
HpySE526I ACGT 2 cut(s) 1282, 1903
HspAI GCGC 2 cut(s) 764, 975
LmnI GCTCC 4 cut(s) 108, 602, 993, 2360
Lsp1109I GCAGC 4 cut(s) 175, 385, 592, 3219
LweI GCATC 7 cut(s) 766, 883, 2060, 2201, 2569, 2591, 2645
MaeI CTAG 5 cut(s) 527, 1127, 1142, 2534, 3045
MaeII ACGT 2 cut(s) 1282, 1903
MaeIII GTNAC 6 cut(s) 1114, 1384, 2288, 2398, 3077, 3083
MfeI CAATTG 2 cut(s) 1956, 2626
MflI RGATCY 5 cut(s) 402, 1178, 1523, 1705, 2228
MhlI GDGCHC 3 cut(s) 105, 998, 2865
MlyI GAGTC 4 cut(s) 1381, 1488, 1798, 3156
MmeI TCCRAC 2 cut(s) 1221, 1870
Mph1103I ATGCAT 2 cut(s) 1218, 2584
MroXI GAANNNNTTC 7 cut(s) 331, 546, 816, 1248, 1342, 2687, 2724
MslI CAYNNNNRTG 3 cut(s) 326, 1361, 2775
MspCI CTTAAG 1 cut(s) 1519
MspI CCGG 1 cut(s) 3122
MspR9I CCNGG 8 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008, 3123
MunI CAATTG 2 cut(s) 1956, 2626
MvaI CCWGG 7 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008
MwoI GCNNNNNNNGC 7 cut(s) 185, 225, 417, 1222, 2461, 2840, 3291
NciI CCSGG 1 cut(s) 3123
NcoI CCATGG 1 cut(s) 406
NdeI CATATG 1 cut(s) 2730
NlaIV GGNNCC 6 cut(s) 66, 83, 117, 404, 937, 2802
NmuCI GTSAC 3 cut(s) 1114, 1384, 2398
NsiI ATGCAT 2 cut(s) 1218, 2584
NspI RCATGY 3 cut(s) 415, 1086, 2811
PaeI GCATGC 3 cut(s) 415, 1086, 2811
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 1300
PceI AGGCCT 1 cut(s) 1467
PdmI GAANNNNTTC 7 cut(s) 331, 546, 816, 1248, 1342, 2687, 2724
PflMI CCANNNNNTGG 1 cut(s) 2872
PfoI TCCNGGA 2 cut(s) 1497, 2740
PkrI GCNGC 5 cut(s) 81, 190, 375, 607, 3209
PleI GAGTC 4 cut(s) 1381, 1488, 1798, 3155
PpsI GAGTC 4 cut(s) 1381, 1488, 1798, 3155
PpuMI RGGWCCY 1 cut(s) 2801
PshAI GACNNNNGTC 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 1903
Psp5II RGGWCCY 1 cut(s) 2801
Psp6I CCWGG 7 cut(s) 179, 715, 1273, 1497, 1974, 2740, 3006
PspEI GGTNACC 1 cut(s) 2398
PspFI CCCAGC 2 cut(s) 219, 1239
PspGI CCWGG 7 cut(s) 179, 715, 1273, 1497, 1974, 2740, 3006
PspN4I GGNNCC 6 cut(s) 66, 83, 117, 404, 937, 2802
PspPI GGNCC 5 cut(s) 28, 713, 1453, 2801, 3119
PspPPI RGGWCCY 1 cut(s) 2801
PspXI VCTCGAGB 1 cut(s) 441
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
PstI CTGCAG 2 cut(s) 2003, 2152
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 5 cut(s) 402, 1178, 1523, 1705, 2228
RsaI GTAC 7 cut(s) 126, 1914, 2026, 2557, 2853, 3056, 3064
RsaNI GTAC 7 cut(s) 125, 1913, 2025, 2556, 2852, 3055, 3063
RseI CAYNNNNRTG 3 cut(s) 326, 1361, 2775
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 5 cut(s) 80, 189, 374, 606, 3208
Sau96I GGNCC 5 cut(s) 28, 713, 1453, 2801, 3119
ScaI AGTACT 1 cut(s) 3056
SchI GAGTC 4 cut(s) 1381, 1488, 1798, 3156
ScrFI CCNGG 8 cut(s) 181, 717, 1275, 1499, 1976, 2742, 3008, 3123
SduI GDGCHC 3 cut(s) 105, 998, 2865
SfaNI GCATC 7 cut(s) 766, 883, 2060, 2201, 2569, 2591, 2645
SfcI CTRYAG 2 cut(s) 1999, 2148
Sfr274I CTCGAG 1 cut(s) 441
SinI GGWCC 3 cut(s) 713, 1453, 2801
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 3 cut(s) 326, 1361, 2775
SmlI CTYRAG 6 cut(s) 441, 1489, 1519, 1694, 1799, 2465
SmoI CTYRAG 6 cut(s) 441, 1489, 1519, 1694, 1799, 2465
SphI GCATGC 3 cut(s) 415, 1086, 2811
SseBI AGGCCT 1 cut(s) 1467
SsiI CCGC 6 cut(s) 79, 337, 371, 415, 622, 2293
SspI AATATT 3 cut(s) 1068, 1133, 2752
SspMI CTAG 5 cut(s) 527, 1127, 1142, 2534, 3045
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 1467
StyD4I CCNGG 8 cut(s) 179, 715, 1273, 1497, 1974, 2740, 3006, 3121
StyI CCWWGG 3 cut(s) 406, 1351, 1747
TaaI ACNGT 5 cut(s) 1209, 1260, 2117, 3083, 3089
TaiI ACGT 2 cut(s) 1285, 1906
TaqI TCGA 3 cut(s) 442, 474, 502
TatI WGTACW 4 cut(s) 124, 2555, 2851, 3054
TauI GCSGC 1 cut(s) 82
TscAI CASTG 3 cut(s) 2568, 2877, 3277
TseFI GTSAC 3 cut(s) 1114, 1384, 2398
TseI GCWGC 4 cut(s) 188, 373, 605, 3207
Tsp45I GTSAC 3 cut(s) 1114, 1384, 2398
TspGWI ACGGA 4 cut(s) 277, 903, 2610, 3140
TspRI CASTG 3 cut(s) 2568, 2877, 3277
Van91I CCANNNNNTGG 1 cut(s) 2872
Vha464I CTTAAG 1 cut(s) 1519
VpaK11BI GGWCC 3 cut(s) 713, 1453, 2801
XapI RAATTY 9 cut(s) 459, 1414, 1483, 1612, 1723, 2375, 2470, 2894, 2999
XceI RCATGY 3 cut(s) 415, 1086, 2811
XcmI CCANNNNNNNNNTGG 3 cut(s) 562, 1745, 2777
XhoI CTCGAG 1 cut(s) 441
XmiI GTMKAC 2 cut(s) 293, 2530
XmnI GAANNNNTTC 7 cut(s) 331, 546, 816, 1248, 1342, 2687, 2724
XspI CTAG 5 cut(s) 527, 1127, 1142, 2534, 3045
ZrmI AGTACT 1 cut(s) 3056
Zsp2I ATGCAT 2 cut(s) 1218, 2584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.