Rmu_sc0000804.1_g000001

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000804.1
OG0000105
Physical Location & Seq
Forward (+)
4990 .. 8181
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000804.1_g000001.1.cds

Sequence Viewer

Length: 1230 bp
atgagtttccgcttgcctatatctggtctgtgtaatttaacatatctgaacctaagtaattgcaatcttggtgaaggagcatttgccaatgaatttggttactttccttctttggtgaccttgaatctaagtggaaacaattttgttcatcttccttcaggcattggattgctttctaagcttgagaactttaacttggagaattgcaagagacttcaagagttgtcagacctgccatcaaatagtatactggatttaagggcggatggttgtacttcactgaaatacttgtttgatgcatcaaatttgaacagattaaacaaatcatatttcaatttcatcaattgcttcaatctaaatggcaatcaaggatgcaataacatagcatttgaaatgctgaagacattcatttatcaggcaatctctaataagagggaaacttttcaaattgtaattcctggaagttatattcctgactggttcaaccattggagttttgggtgttcattaagtatatctttacctgcacattggaataacagtcggggatttgctttgtgtgcggtttttgtactccatgagcaccaacgggtggatgagctttatacatatgaatttaagacttttaatgcaacacatcatcttgtatgttgcctgaagctcgatggaagagaattgggtgcatatggcagacagcctgcatttcgctttagtgaaaaattttgccaggttgagtcagatcatctgtggctattctatgtatctcgtgataaatactttggtatagagtggtggcctaacagttccagtcaggttgagttcttatttgaaaccagagggccaggtctgatggtgaaggagtgtggagtccatctgatatatgagcaagatgtgcaagaattgaaccaaacaaccactcaatcaagcagtaggatgtcttcttatgaggatatattgattggttttgacattccagttgcaggggaaatcagttgcactgtaattacattctggagctccattgccaatgtctccaatgagttgcaccaagggggaaccaggggctggtgccaacttggtttcagggacagccccaaaacccttcatctttttgatgttcaagaacccaaatcacaacggtcagcccccatgtcaaagacttcaagaaaaactccttgtgtcttcaacttgcaaaaccatttcgacatcagattcgatgtggcatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

409

Amino Acids

46.74

Weight (kDa)

6.06

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 240, 532
AccB1I GGYRCC 1 cut(s) 1068
AccB7I CCANNNNNTGG 2 cut(s) 592, 1065
AccI GTMKAC 1 cut(s) 247
AciI CCGC 3 cut(s) 10, 263, 563
AcsI RAATTY 4 cut(s) 92, 304, 614, 719
AcuI CTGAAG 3 cut(s) 141, 419, 677
AfaI GTAC 2 cut(s) 274, 573
AfiI CCNNNNNNNGG 4 cut(s) 23, 592, 980, 1065
AjnI CCWGG 4 cut(s) 457, 726, 841, 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 181, 601, 661, 1017
AluI AGCT 4 cut(s) 181, 601, 661, 1017
Alw21I GWGCWC 2 cut(s) 585, 1019
Alw26I GTCTC 2 cut(s) 205, 1036
AlwNI CAGNNNCTG 1 cut(s) 1065
AoxI GGCC 2 cut(s) 794, 839
ApoI RAATTY 4 cut(s) 92, 304, 614, 719
ArsI GACNNNNNNTTYG 2 cut(s) 1196, 1228
Asp700I GAANNNNTTC 2 cut(s) 404, 441
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 3 cut(s) 83, 127, 865
BanI GGYRCC 1 cut(s) 1068
BanII GRGCYC 1 cut(s) 1019
BarI GAAGNNNNNNTAC 2 cut(s) 922, 954
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 3 cut(s) 407, 930, 1174
Bbv12I GWGCWC 2 cut(s) 585, 1019
BccI CCATC 5 cut(s) 244, 260, 659, 844, 879
BciT130I CCWGG 4 cut(s) 459, 728, 843, 1060
BcoDI GTCTC 2 cut(s) 205, 1036
BfuAI ACCTGC 2 cut(s) 240, 532
Bme1390I CCNGG 4 cut(s) 459, 728, 843, 1060
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 2 cut(s) 1057, 1070
BmrFI CCNGG 4 cut(s) 459, 728, 843, 1060
BmsI GCATC 3 cut(s) 286, 308, 362
BpiI GAAGAC 3 cut(s) 407, 930, 1174
BpmI CTGGAG 1 cut(s) 1033
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 1048, 1059
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 592, 980, 1065
Bse1I ACTGG 4 cut(s) 255, 482, 807, 974
Bse3DI GCAATG 1 cut(s) 1020
BseBI CCWGG 4 cut(s) 459, 728, 843, 1060
BseDI CCNNGG 2 cut(s) 1048, 1059
BseGI GGATG 4 cut(s) 271, 377, 601, 939
BseLI CCNNNNNNNGG 4 cut(s) 23, 592, 980, 1065
BseMI GCAATG 1 cut(s) 1020
BseNI ACTGG 4 cut(s) 255, 482, 807, 974
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 2 cut(s) 796, 841
BshNI GGYRCC 1 cut(s) 1068
BsiHKAI GWGCWC 2 cut(s) 585, 1019
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 4 cut(s) 23, 592, 980, 1065
BsmAI GTCTC 2 cut(s) 205, 1036
BsmFI GGGAC 1 cut(s) 1100
BsnI GGCC 2 cut(s) 796, 841
Bsp1286I GDGCHC 2 cut(s) 585, 1019
Bsp143I GATC 1 cut(s) 739
BspACI CCGC 3 cut(s) 10, 263, 563
BspANI GGCC 2 cut(s) 796, 841
BspLI GGNNCC 2 cut(s) 1057, 1070
BspMI ACCTGC 2 cut(s) 240, 532
BspT107I GGYRCC 1 cut(s) 1068
BsrDI GCAATG 1 cut(s) 1020
BsrI ACTGG 4 cut(s) 255, 482, 807, 974
BssECI CCNNGG 2 cut(s) 1048, 1059
BssMI GATC 1 cut(s) 739
BssNAI GTATAC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 1 cut(s) 1048
Bst1107I GTATAC 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 4 cut(s) 459, 728, 843, 1060
Bst4CI ACNGT 4 cut(s) 542, 803, 1000, 1140
Bst6I CTCTTC 1 cut(s) 664
BstAPI GCANNNNNTGC 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 14, 699
BstDEI CTNAG 3 cut(s) 53, 128, 177
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 4 cut(s) 271, 377, 601, 939
BstKTI GATC 1 cut(s) 742
BstMAI GTCTC 2 cut(s) 205, 1036
BstMBI GATC 1 cut(s) 739
BstMWI GCNNNNNNNGC 3 cut(s) 178, 560, 892
BstNI CCWGG 4 cut(s) 459, 728, 843, 1060
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 4 cut(s) 457, 726, 841, 1058
BstV2I GAAGAC 3 cut(s) 407, 930, 1174
BstZ17I GTATAC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 796, 841
BtsCI GGATG 4 cut(s) 271, 377, 601, 939
BtsIMutI CAGTG 2 cut(s) 278, 996
BveI ACCTGC 2 cut(s) 240, 532
Cac8I GCNNGC 2 cut(s) 14, 699
CaiI CAGNNNCTG 1 cut(s) 1065
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 273, 572
CviAII CATG 3 cut(s) 578, 1150, 1224
CviQI GTAC 2 cut(s) 273, 572
DdeI CTNAG 3 cut(s) 53, 128, 177
DpnI GATC 1 cut(s) 741
DpnII GATC 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 664
EciI GGCGGA 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 1017
Eco130I CCWWGG 1 cut(s) 1048
Eco24I GRGCYC 1 cut(s) 1019
Eco53kI GAGCTC 1 cut(s) 1017
Eco57I CTGAAG 3 cut(s) 141, 419, 677
Eco91I GGTNACC 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 1017
EcoO65I GGTNACC 1 cut(s) 115
EcoRII CCWGG 4 cut(s) 457, 726, 841, 1058
EcoT14I CCWWGG 1 cut(s) 1048
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 1019
ErhI CCWWGG 1 cut(s) 1048
FaeI CATG 3 cut(s) 581, 1153, 1227
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 1 cut(s) 1100
FatI CATG 3 cut(s) 577, 1149, 1223
FauNDI CATATG 2 cut(s) 610, 685
FblI GTMKAC 1 cut(s) 247
FokI GGATG 4 cut(s) 278, 384, 608, 946
FriOI GRGCYC 1 cut(s) 1019
GsuI CTGGAG 1 cut(s) 1033
HaeIII GGCC 2 cut(s) 796, 841
Hin1II CATG 3 cut(s) 581, 1153, 1227
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 4 cut(s) 124, 734, 867, 1212
HphI GGTGA 3 cut(s) 83, 127, 865
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 6 cut(s) 48, 229, 739, 849, 876, 1211
Hpy188III TCNNGA 6 cut(s) 218, 473, 767, 1012, 1121, 1164
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 5 cut(s) 68, 117, 165, 850, 1112
HpyCH4III ACNGT 4 cut(s) 542, 803, 1000, 1140
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 560, 892
HpyF3I CTNAG 3 cut(s) 53, 128, 177
Hsp92II CATG 3 cut(s) 581, 1153, 1227
Kzo9I GATC 1 cut(s) 739
LmnI GCTCC 3 cut(s) 77, 1014, 1022
LweI GCATC 3 cut(s) 286, 308, 362
MaeIII GTNAC 2 cut(s) 98, 115
MalI GATC 1 cut(s) 741
MboI GATC 1 cut(s) 739
MboII GAAGA 5 cut(s) 143, 412, 681, 930, 1174
MfeI CAATTG 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 585, 1019
MlyI GAGTC 2 cut(s) 743, 876
MnlI CCTC 3 cut(s) 426, 830, 940
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 2 cut(s) 404, 441
MseI TTAA 7 cut(s) 38, 192, 257, 317, 509, 618, 627
MspR9I CCNGG 4 cut(s) 459, 728, 843, 1060
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 4 cut(s) 459, 728, 843, 1060
MwoI GCNNNNNNNGC 3 cut(s) 178, 560, 892
NdeI CATATG 2 cut(s) 610, 685
NdeII GATC 1 cut(s) 739
NlaIII CATG 3 cut(s) 581, 1153, 1227
NlaIV GGNNCC 2 cut(s) 1057, 1070
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 301
PdmI GAANNNNTTC 2 cut(s) 404, 441
PfeI GAWTC 2 cut(s) 124, 1212
PflMI CCANNNNNTGG 2 cut(s) 592, 1065
PfoI TCCNGGA 1 cut(s) 457
PleI GAGTC 2 cut(s) 742, 875
PpsI GAGTC 2 cut(s) 742, 875
Psp124BI GAGCTC 1 cut(s) 1019
Psp6I CCWGG 4 cut(s) 457, 726, 841, 1058
PspEI GGTNACC 1 cut(s) 115
PspGI CCWGG 4 cut(s) 457, 726, 841, 1058
PspN4I GGNNCC 2 cut(s) 1057, 1070
PspPI GGNCC 1 cut(s) 839
PstNI CAGNNNCTG 1 cut(s) 1065
RsaI GTAC 2 cut(s) 274, 573
RsaNI GTAC 2 cut(s) 273, 572
SacI GAGCTC 1 cut(s) 1019
SaqAI TTAA 7 cut(s) 38, 192, 257, 317, 509, 618, 627
Sau3AI GATC 1 cut(s) 739
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 2 cut(s) 743, 876
ScrFI CCNGG 4 cut(s) 459, 728, 843, 1060
SduI GDGCHC 2 cut(s) 585, 1019
SfaNI GCATC 3 cut(s) 286, 308, 362
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SsiI CCGC 3 cut(s) 10, 263, 563
SstI GAGCTC 1 cut(s) 1019
StyD4I CCNGG 4 cut(s) 457, 726, 841, 1058
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 4 cut(s) 542, 803, 1000, 1140
TaqI TCGA 3 cut(s) 663, 1203, 1215
TatI WGTACW 2 cut(s) 272, 571
TfiI GAWTC 2 cut(s) 124, 1212
Tru1I TTAA 7 cut(s) 38, 192, 257, 317, 509, 618, 627
Tru9I TTAA 7 cut(s) 38, 192, 257, 317, 509, 618, 627
TscAI CASTG 2 cut(s) 285, 1003
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 7 cut(s) 105, 137, 328, 397, 495, 627, 1094
TspRI CASTG 2 cut(s) 285, 1003
Van91I CCANNNNNTGG 2 cut(s) 592, 1065
XapI RAATTY 4 cut(s) 92, 304, 614, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 2 cut(s) 404, 441
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.