Rroxscaffold_4G00326930

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000105
Physical Location & Seq
Forward (+)
59168294 .. 59172358
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326930.1

Sequence Viewer

Length: 1854 bp
ATGGCGTCAACCTCTTCTCGTCGTCAATGGAAATACGATGTCTTTCTGAGTTTCAGGGGGGCAGATACCCGCGATAATATTACCGGTCATCTGTATCATGCACTAAATCGGAAAGGAATTCTCACCTTTATGGATGACCGAGAGCTTGAGAAAGGAAAATACATTAGGCCTGAACTTTTAGCTGCAATTGAGGAGTCTAGATGTGCGATTGTGATTCTCTCATGGAGATATGCTCCTGCTTTGACAGAGGTCGCCAATCTTTCTGGCTGGGATTCCAAGAATTATCCATTCGTAAGAGAACTAATTGAGGAAATTGTTAATCATATACTAAAGAAGTCCGTGTATACATCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGATTCCCGCATTGATGATCTATTAAGCAATTACATATGTCCACAGCTTTGTGGGGGAACAGATTCAATCCAAGGCATGGTAATGGAGTTGACTAAATTACAAGTGGCTCATTGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTAGTCTTCTTCATATTTGTAATGTGGACCTTCCCGAAGGCCTCACTTGTCTTCCTAATTCCTTGAGACTCCTCGAATGGACTGGGTATCCCTTAAGATCTCTCCCACAAAATTTTGAAACAGATGAGCTTATTGAACTTAACTTGTGCCACAGCAACATTGAACAGCTTTGGAAGGGAACAAAGGAAACTGATGTGAATAGTGGGTCTGCAATAGAAATGTCATCTACCCATGATCGCATAAAATATGTGGGAAGTTCAATCTTGCCTTCTGGATGGGTGCAAGAAGTGAATACAGAGCCAACGAGTTTCCGCTTGCCTATATCTGGTCTGTGTAATTTAACATATTTGAACCTGAGTAATTGCAAGCTTGGTGACGGAGCATTTGCCAATGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGAAACAATTTTGTTCGCCTTCCTTCAGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTATACTTGATTTAAGGGCAGATGGTTGTACTTCACTGAAGTACTTGTTTAATGCATCAAATTTGAACAGACTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAATGGCAATCAAGGATGCAATAACGTAGCATTTGAAATGCTGAAGACATTCATGAATCAGGGAATCTCTAATAACAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTCCTGAGTGGTTCAGCCATCGGACTGATGGGCGTTCCTTAGGTGTATCTCTACCTGCACATTGGAATAACAGGCGATTTTTGGGATTTGCTTTGTGTGCTGTTTTTGTACTCCATGAGCACCATCGGGTGGATAAGCTTCATAGAGATGAATTCAAGACTTTTAATGCAACACATCATCTTGTATGTTGCCTGAAGCTCGATGGAAGAGAATTGGAAGTATATGGCAGACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTAAGTCAGATCACCTGTGGCTATTCTATATATCTCGTGATAAATACTTTGGTACAGAGTGGTGGCATAACAGTTGCAGACGGCTTGAGTTCTTATTTAAAATCAGAGGGCCGGGTCTGAAGGTGAAGGAGTGTGGAGTCCGTCTGATATATGAGCAAGATGTGCAAGAGCTGAACCAAACGACCACTCAATCAAGCAGTAGGATGTCTCCTTATGAGGATATATTGAATGGTTTTGACATTCCGGTTGCAGGGAAAAGTGGCATTCCGGAAAACCAGTGGCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

617

Amino Acids

70.53

Weight (kDa)

6.33

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 78 2.6e-20 TIR domain
TIR_2 PF13676 14 - 78 1e-07 TIR domain
LRR_3 PF07725 219 - 237 1.5e-06 Leucine Rich Repeat
C-JID PF20160 428 - 577 2.5e-20 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1360
AccB7I CCANNNNNTGG 2 cut(s) 457, 1426
AccI GTMKAC 2 cut(s) 344, 1075
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 1831
AciI CCGC 3 cut(s) 70, 388, 838
AcsI RAATTY 7 cut(s) 117, 514, 637, 920, 1132, 1448, 1553
AcuI CTGAAG 5 cut(s) 969, 1130, 1247, 1511, 1703
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 1102, 1115, 1407, 1618
AfiI CCNNNNNNNGG 4 cut(s) 457, 851, 1426, 1814
AflII CTTAAG 1 cut(s) 619
AgeI ACCGGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 1285, 1560
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
Alw21I GWGCWC 1 cut(s) 1419
Alw26I GTCTC 4 cut(s) 525, 586, 1033, 1776
Aor13HI TCCGGA 1 cut(s) 1831
AoxI GGCC 3 cut(s) 167, 565, 1673
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 7 cut(s) 117, 514, 637, 920, 1132, 1448, 1553
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 4 cut(s) 382, 442, 1232, 1269
AspS9I GGNCC 2 cut(s) 553, 1673
AsuC2I CCSGG 1 cut(s) 1677
AsuHPI GGTGA 5 cut(s) 115, 911, 955, 1568, 1699
AvaII GGWCC 1 cut(s) 553
AxyI CCTNAGG 1 cut(s) 1336
BauI CACGAG 1 cut(s) 1599
BbsI GAAGAC 3 cut(s) 524, 569, 1235
Bbv12I GWGCWC 1 cut(s) 1419
BbvI GCAGC 1 cut(s) 169
BccI CCATC 7 cut(s) 795, 1072, 1088, 1319, 1323, 1428, 1493
BceAI ACGGC 1 cut(s) 1661
BciT130I CCWGG 2 cut(s) 1287, 1562
BciVI GTATCC 1 cut(s) 624
BcnI CCSGG 1 cut(s) 1677
BcoDI GTCTC 4 cut(s) 525, 586, 1033, 1776
BfaI CTAG 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 619
BfuAI ACCTGC 1 cut(s) 1360
BfuI GTATCC 1 cut(s) 624
BglII AGATCT 1 cut(s) 623
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 1115
Bme1390I CCNGG 3 cut(s) 1287, 1562, 1677
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 553, 1673
BmrFI CCNGG 3 cut(s) 1287, 1562, 1677
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 1136, 1190
BmuI ACTGGG 1 cut(s) 618
BoxI GACNNNNGTC 1 cut(s) 248
BpiI GAAGAC 3 cut(s) 524, 569, 1235
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpuEI CTTGAG 4 cut(s) 167, 610, 1031, 1670
BpuMI CCSGG 1 cut(s) 1677
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 3 cut(s) 83, 1807, 1831
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 851, 1426, 1814
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 613, 1840, 1853
Bse21I CCTNAGG 1 cut(s) 1336
BseAI TCCGGA 1 cut(s) 1831
BseBI CCWGG 2 cut(s) 1287, 1562
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 4 cut(s) 139, 806, 1205, 1773
BseLI CCNNNNNNNGG 4 cut(s) 457, 851, 1426, 1814
BseMII CTCAG 3 cut(s) 38, 872, 1293
BseNI ACTGG 3 cut(s) 613, 1840, 1853
BseRI GAGGAG 2 cut(s) 206, 587
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 1338
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 169, 567, 1675
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 1419
BsiSI CCGG 4 cut(s) 84, 1676, 1808, 1832
BslI CCNNNNNNNGG 4 cut(s) 457, 851, 1426, 1814
BsmAI GTCTC 4 cut(s) 525, 586, 1033, 1776
BsmI GAATGC 1 cut(s) 1827
BsnI GGCC 3 cut(s) 169, 567, 1675
Bsp1286I GDGCHC 1 cut(s) 1419
Bsp13I TCCGGA 1 cut(s) 1831
Bsp143I GATC 4 cut(s) 397, 623, 760, 1573
BspACI CCGC 3 cut(s) 70, 388, 838
BspANI GGCC 3 cut(s) 169, 567, 1675
BspCNI CTCAG 3 cut(s) 39, 873, 1294
BspEI TCCGGA 1 cut(s) 1831
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 1236
BspMI ACCTGC 1 cut(s) 1360
BspTI CTTAAG 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 3 cut(s) 613, 1840, 1853
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 4 cut(s) 397, 623, 760, 1573
BssNAI GTATAC 2 cut(s) 345, 1076
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1599
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 2 cut(s) 345, 1076
Bst2BI CACGAG 1 cut(s) 1599
Bst2UI CCWGG 2 cut(s) 1287, 1562
Bst4CI ACNGT 1 cut(s) 1637
Bst6I CTCTTC 2 cut(s) 19, 1498
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 619
BstAPI GCANNNNNTGC 1 cut(s) 1726
BstC8I GCNNGC 3 cut(s) 842, 893, 1533
BstDEI CTNAG 7 cut(s) 47, 527, 881, 956, 1005, 1302, 1336
BstEII GGTNACC 1 cut(s) 943
BstF5I GGATG 4 cut(s) 139, 806, 1205, 1773
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 4 cut(s) 400, 626, 763, 1576
BstMAI GTCTC 4 cut(s) 525, 586, 1033, 1776
BstMBI GATC 4 cut(s) 397, 623, 760, 1573
BstMWI GCNNNNNNNGC 3 cut(s) 1006, 1394, 1726
BstNI CCWGG 2 cut(s) 1287, 1562
BstPAI GACNNNNGTC 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 943
BstSCI CCNGG 3 cut(s) 1285, 1560, 1675
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 3 cut(s) 524, 569, 1235
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BstZ17I GTATAC 2 cut(s) 345, 1076
Bsu36I CCTNAGG 1 cut(s) 1336
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 3 cut(s) 169, 567, 1675
BtsCI GGATG 4 cut(s) 139, 806, 1205, 1773
BtsIMutI CAGTG 3 cut(s) 1106, 1846, 1847
BveI ACCTGC 1 cut(s) 1360
Cac8I GCNNGC 3 cut(s) 842, 893, 1533
CciI TCATGA 1 cut(s) 1236
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 553, 1673
Csp6I GTAC 4 cut(s) 1101, 1114, 1406, 1617
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 6 cut(s) 98, 222, 457, 758, 1237, 1412
CviQI GTAC 4 cut(s) 1101, 1114, 1406, 1617
DdeI CTNAG 7 cut(s) 47, 527, 881, 956, 1005, 1302, 1336
DpnI GATC 4 cut(s) 399, 625, 762, 1575
DpnII GATC 4 cut(s) 397, 623, 760, 1573
DraI TTTAAA 1 cut(s) 1663
Eam1104I CTCTTC 2 cut(s) 19, 1498
EarI CTCTTC 2 cut(s) 19, 1498
Eco130I CCWWGG 1 cut(s) 451
Eco147I AGGCCT 2 cut(s) 169, 567
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 5 cut(s) 969, 1130, 1247, 1511, 1703
Eco81I CCTNAGG 1 cut(s) 1336
Eco91I GGTNACC 1 cut(s) 943
EcoO65I GGTNACC 1 cut(s) 943
EcoRI GAATTC 2 cut(s) 117, 1448
EcoRII CCWGG 2 cut(s) 1285, 1560
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 1129
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 6 cut(s) 101, 225, 460, 761, 1240, 1415
FatI CATG 6 cut(s) 97, 221, 456, 757, 1236, 1411
FauI CCCGC 2 cut(s) 77, 395
FauNDI CATATG 1 cut(s) 416
FblI GTMKAC 2 cut(s) 344, 1075
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 4 cut(s) 146, 813, 1212, 1780
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 198
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 3 cut(s) 169, 567, 1675
HapII CCGG 4 cut(s) 84, 1676, 1808, 1832
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 101, 225, 460, 761, 1240, 1415
HincII GTYRAC 3 cut(s) 9, 361, 471
HindII GTYRAC 3 cut(s) 9, 361, 471
HindIII AAGCTT 3 cut(s) 893, 1007, 1433
HpaII CCGG 4 cut(s) 84, 1676, 1808, 1832
HphI GGTGA 5 cut(s) 115, 911, 955, 1568, 1699
Hpy166II GTNNAC 7 cut(s) 9, 345, 361, 422, 471, 553, 1076
Hpy188I TCNGA 8 cut(s) 48, 111, 1057, 1320, 1573, 1670, 1683, 1710
Hpy188III TCNNGA 9 cut(s) 198, 560, 798, 1046, 1237, 1301, 1453, 1601, 1832
Hpy8I GTNNAC 7 cut(s) 9, 345, 361, 422, 471, 553, 1076
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 9 cut(s) 557, 566, 694, 804, 989, 993, 1070, 1678, 1684
HpyCH4III ACNGT 1 cut(s) 1637
HpyCH4IV ACGT 1 cut(s) 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 1006, 1394, 1726
HpyF3I CTNAG 7 cut(s) 47, 527, 881, 956, 1005, 1302, 1336
HpySE526I ACGT 1 cut(s) 1209
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 101, 225, 460, 761, 1240, 1415
Kpn2I TCCGGA 1 cut(s) 1831
Kzo9I GATC 4 cut(s) 397, 623, 760, 1573
LmnI GCTCC 2 cut(s) 238, 905
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 1136, 1190
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 1209
MaeIII GTNAC 3 cut(s) 899, 926, 943
MalI GATC 4 cut(s) 399, 625, 762, 1575
MboI GATC 4 cut(s) 397, 623, 760, 1573
MboII GAAGA 8 cut(s) 6, 342, 524, 527, 569, 1240, 1515, 1562
MfeI CAATTG 2 cut(s) 186, 1171
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 1419
MlyI GAGTC 3 cut(s) 203, 588, 1710
MnlI CCTC 9 cut(s) 22, 184, 241, 301, 578, 608, 946, 1664, 1774
Mph1103I ATGCAT 1 cut(s) 1129
MroI TCCGGA 1 cut(s) 1831
MroXI GAANNNNTTC 4 cut(s) 382, 442, 1232, 1269
MslI CAYNNNNRTG 4 cut(s) 128, 377, 461, 1443
MspCI CTTAAG 1 cut(s) 619
MspI CCGG 4 cut(s) 84, 1676, 1808, 1832
MspR9I CCNGG 3 cut(s) 1287, 1562, 1677
MunI CAATTG 2 cut(s) 186, 1171
Mva1269I GAATGC 1 cut(s) 1827
MvaI CCWGG 2 cut(s) 1287, 1562
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 1006, 1394, 1726
NciI CCSGG 1 cut(s) 1677
NdeI CATATG 1 cut(s) 416
NdeII GATC 4 cut(s) 397, 623, 760, 1573
NlaIII CATG 6 cut(s) 101, 225, 460, 761, 1240, 1415
NmuCI GTSAC 2 cut(s) 899, 943
NsiI ATGCAT 1 cut(s) 1129
PagI TCATGA 1 cut(s) 1236
PceI AGGCCT 2 cut(s) 169, 567
PctI GAATGC 1 cut(s) 1827
PdmI GAANNNNTTC 4 cut(s) 382, 442, 1232, 1269
PfeI GAWTC 7 cut(s) 214, 272, 383, 443, 952, 1240, 1248
PflMI CCANNNNNTGG 2 cut(s) 457, 1426
PfoI TCCNGGA 1 cut(s) 1285
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 3 cut(s) 202, 588, 1709
PpsI GAGTC 3 cut(s) 202, 588, 1709
PshAI GACNNNNGTC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 1285, 1560
PspEI GGTNACC 1 cut(s) 943
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 1285, 1560
PspPI GGNCC 2 cut(s) 553, 1673
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 4 cut(s) 1102, 1115, 1407, 1618
RsaNI GTAC 4 cut(s) 1101, 1114, 1406, 1617
RseI CAYNNNNRTG 4 cut(s) 128, 377, 461, 1443
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 4 cut(s) 397, 623, 760, 1573
Sau96I GGNCC 2 cut(s) 553, 1673
ScaI AGTACT 1 cut(s) 1115
SchI GAGTC 3 cut(s) 203, 588, 1710
ScrFI CCNGG 3 cut(s) 1287, 1562, 1677
SduI GDGCHC 1 cut(s) 1419
SfaNI GCATC 2 cut(s) 1136, 1190
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 4 cut(s) 128, 377, 461, 1443
SmlI CTYRAG 5 cut(s) 146, 589, 619, 1010, 1649
SmoI CTYRAG 5 cut(s) 146, 589, 619, 1010, 1649
SseBI AGGCCT 2 cut(s) 169, 567
SsiI CCGC 3 cut(s) 70, 388, 838
SspI AATATT 2 cut(s) 79, 1297
SspMI CTAG 1 cut(s) 198
StuI AGGCCT 2 cut(s) 169, 567
StyD4I CCNGG 3 cut(s) 1285, 1560, 1675
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 1637
TaiI ACGT 1 cut(s) 1212
TaqI TCGA 2 cut(s) 600, 1497
TaqII GACCGA 1 cut(s) 153
TatI WGTACW 3 cut(s) 1100, 1113, 1405
TfiI GAWTC 7 cut(s) 214, 272, 383, 443, 952, 1240, 1248
TscAI CASTG 3 cut(s) 1113, 1847, 1853
TseFI GTSAC 2 cut(s) 899, 943
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 2 cut(s) 899, 943
TspDTI ATGAA 8 cut(s) 361, 527, 933, 1156, 1225, 1253, 1427, 1461
TspGWI ACGGA 3 cut(s) 328, 918, 1694
TspRI CASTG 3 cut(s) 1113, 1847, 1853
Van91I CCANNNNNTGG 2 cut(s) 457, 1426
Vha464I CTTAAG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 7 cut(s) 117, 514, 637, 920, 1132, 1448, 1553
XbaI TCTAGA 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 1322
XmiI GTMKAC 2 cut(s) 344, 1075
XmnI GAANNNNTTC 4 cut(s) 382, 442, 1232, 1269
XspI CTAG 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 1115
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.