Rroxscaffold_7G00198650

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000105
Physical Location & Seq
Forward (+)
44295336 .. 44302222
6887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198650.1

Sequence Viewer

Length: 2781 bp
ATGGGTGGGGTTGGTAAGACAACTCTTTCAAAAGTTGTTTACGAGAGATTCTCTCAGGAGTTTGACTGCAAAATCTTTCTTCCGAATATCAGAGAATTAGCTGTTGCACAAAGGGGTCTACTTGAGTTGCAAAAGCAACTTCTTTCTGGGATTTGGTCGAAAAGCGATGGCGTACTCGATGTTGATGAAGGAGCCGCAATGATAATGAGGTTTTTTCGTCATAAAAGGGTTCTTCTTGTTCTCGATGATGTTAGCGATTTGCGCCAATTGGAATATTTGGCTGGAGCTCAAGATTGGTTCGGATTTGGGAGCAGAATTATGATTACAACTAGAGATGAGGGTTTGTTAATCCAACATGGAGTGGAGAGAAGATTTAAGGTAGAGGAATTAAATGATGATGAAGCTCTTGAACTGTTGAGTTGGCGAGCCTTTAACAAACCAAGCCCCGAACAAAATTATCTTGCTGTCTGTAGTTCTGTTGTGAATTATGCTAAAGGACTTCCACTAGCTCTTAAAGTCATAGGTTCTTCTCTACGTGGAAGAAGTCCAAACGAATGGAACAGTGCTGTAGGAAAAGTGAGAAAAATGGGTAATTCAGACATCTTTGAGATGCTTAGGATAAGTTATGATAATCTAGATGCTGAAGAGAAGGACATTTTCCTGGACATTGCATTTTTTTATAGAGGAACGGACAAAGATCGTGTAGTAGAAATGCTACTGGCTTGTGGTTTCTATGGAGGTATTGGAGTAGATGTCCTTGTTGAGAAATCTCTCATAACTATTTCATGTGGCCGAATAGAGATGCATGATTTGATCAAAGAAATGGCTTGGGAAATTGTCCATCGAGAATTTCCTAATTTGCCAGGAAAGCGAAGCCGGTTGTGGCATCAGGAAGATGTCTCTCATGTCTTGAGTCAAAATACAGGAACAAATGCAATACAATGCATAGAGTCGAACTTGGATCTGGTGACAGTTGCCCATCCTGACGCATTTGTGAAAATGACGAACCTGAGGATGCTCCGCATTGATTCTGGGGTCCACCTCCCTAACGGGCTCACCGGTCTCCCCAATAGTTTACGGTTATTGGAGTGGACAGGATGTCCTCTGAAATCTTTGCCACCAAGTTTCGCACCAAAGAATCTTGTAGAAATTACAATGTGTCGCAGTAAAATTGAAAAGCTTTGGACGGGTGAACAGTTCCCCAATCTGAAATTCATGGATCTCAGTCACTGTGAACAACTTGCTGAGGTCCCAGACCTCAGCCATTCCCCACGTCTTGAGAGTCTGATTCTTGAAGGTTGTGTTCGATTGTATAAGGTTGATCAATCCCTTGGAATGCTTGAAAGACTTACTATTTTGAACTTGAAAGATTGTAAACATTTGGTGCGTTTTCCGAGCAGTGTAAATGGTCTGAAATCTGTCAAAGTTATTAATCTTTCTGGTTGCTCGAAGTTTGATAAACTGCCAGATGACTTGGGTTATGCAGAGAGTTTGGAGGAGCTTGTAGTAAGTGGAACAGCCATAAGAGTGGTACCTTATTCTATTGGAAGGCTTGAAAGACTGACTTTGATGGACTTGAAAAATTGCAAAAACCTTGTGCATCTTCCAAGCAGTGTGGATGGCTTAAAATCCCTCAAAGTTCTTAATCTTGCTGGTTGCTCAAAGCTTGCGAAGCTACCATATGAGCTAGGCTTTGTCGTGTGTTTGGAGGAGCTTGATGTTAGTGGAACTGCAATAAGGGAACCACCTTTCTCCATTGGTCTTTTGAGAAACCTAAAGGGATTATCTTTTCATGGATGCAGGGAACGACCATCATCTATATCGTGGATAACTAGCTCCCTCTTCTCGTCAGTGCTAAAAAGAAGTTCTGATCCCATAGCTCTGTCATTGCCTTCTTTATCTGGTCTGCAGTCTTTAACAAAACTTGATATGAGTGACTGTGATCTTGTAGAAGAAGCGATCCTCAATGATATAGGCAGCCTGACCTCATTAAGAATACTAAATCTAAGCAGAAACCATTTTGTCACCCTTACCGGAAGCATATGCAAATTTCCTGAGCTTAGACTTCTTCGAGTGGAGTATTGCCAGAGGCTTCAAAAATTGGCAGAGCTTCCATGTGGTCTAGAAGTGTGGGCTGACGATTGTATGTCATTGGAAACATTGTCACATTCAATAAAGCCACGCAATATGAGACGATGCGAGTTTCTGTCTTCAGTATATTGTATTAACTGTTTCAAACTGGTGGAGAAGCAAGGCTGCAAGACTGTGGCAGCTACATTGCTGAGACGGTACCTACAGGAAGTTCCTTGTGGAGGAAAGAGATTTGCGTTTGTTATTCCTGGAAATGAAATTCCAGAGTGTTTCAAACATCAAAGTGTGGGATCTTCCGTCAGTGTGGAGTTGGAACCTGGTTGGTCTACTGATGAGTTAATGGGATACGCAGTGTGTACTGTTTTTGCAGTACATGAACACCAGACTTCATTAAAGAGTGATATTTGTTGCCAACTGGAAGTCGATGGAAAAATGTTGTTTCCAGCACCTATTTTTCTCGATATGCCTCGTCGCATGGGTCAAGCTAAGTCAGATCACCTTTGGTTATTCTATGTTCCTCATCACGGAAAACACTCTGTTAATGAATGGCAGGATATCAACAATCAGCTGCAGCTTTCGTTTGAAATTGATGGCCCAGGCTTGGAAGTGAAGAAGTGTGGGATATTTTTGATATACAAGTCACGAGAGAAAATGTTTTCAGGGAGGAAAGTAATTTTGTCCCGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

926

Amino Acids

104.11

Weight (kDa)

6.89

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 147 9.2e-17 NB-ARC domain
WHD_ROQ1 PF23282 215 - 281 1.8e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 380 - 399 1.8e-06 Leucine Rich Repeat
LRR_14 PF23598 384 - 502 9.8e-06 Leucine-rich repeat region
LRR_14 PF23598 629 - 702 4.4e-06 Leucine-rich repeat region
C-JID PF20160 779 - 912 1.8e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1531, 2289
AccB1I GGYRCC 2 cut(s) 1531, 2289
AccI GTMKAC 2 cut(s) 118, 2417
AciI CCGC 2 cut(s) 195, 1021
AclWI GGATC 5 cut(s) 969, 1227, 1865, 1954, 2389
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 4 cut(s) 848, 1211, 2048, 2349
AcuI CTGAAG 2 cut(s) 663, 2196
AfaI GTAC 5 cut(s) 174, 1533, 2291, 2449, 2463
AfiI CCNNNNNNNGG 3 cut(s) 2312, 2615, 2692
AgeI ACCGGT 1 cut(s) 1058
AhdI GACNNNNNGTC 1 cut(s) 1098
AjiI CACGTC 1 cut(s) 1274
AjnI CCWGG 5 cut(s) 660, 862, 2338, 2407, 2686
AjuI GAANNNNNNNTTGG 2 cut(s) 1196, 1228
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 4 cut(s) 904, 1067, 2185, 2278
AlwI GGATC 5 cut(s) 969, 1227, 1865, 1954, 2389
AlwNI CAGNNNCTG 1 cut(s) 1230
AoxI GGCC 2 cut(s) 790, 2683
ApeKI GCWGC 5 cut(s) 1977, 2256, 2270, 2659, 2662
ApoI RAATTY 4 cut(s) 848, 1211, 2048, 2349
AseI ATTAAT 1 cut(s) 1431
AsiGI ACCGGT 1 cut(s) 1058
Asp718I GGTACC 2 cut(s) 1531, 2289
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 1036, 1249, 2684
AsuHPI GGTGA 5 cut(s) 979, 1048, 1202, 2017, 2579
AvaII GGWCC 2 cut(s) 1036, 1249
AxyI CCTNAGG 1 cut(s) 1010
BanI GGYRCC 2 cut(s) 1531, 2289
BanII GRGCYC 2 cut(s) 289, 1056
BauI CACGAG 1 cut(s) 2733
BbsI GAAGAC 1 cut(s) 2202
Bbv12I GWGCWC 1 cut(s) 289
BbvCI CCTCAGC 2 cut(s) 1245, 1259
BbvI GCAGC 5 cut(s) 1989, 2243, 2282, 2646, 2674
BccI CCATC 8 cut(s) 161, 849, 987, 1564, 1613, 1819, 2510, 2675
BciT130I CCWGG 5 cut(s) 662, 864, 2340, 2409, 2688
BciVI GTATCC 1 cut(s) 2429
BclI TGATCA 2 cut(s) 813, 1321
BcoDI GTCTC 4 cut(s) 904, 1067, 2185, 2278
BfaI CTAG 6 cut(s) 330, 506, 635, 1688, 1833, 2123
BfmI CTRYAG 5 cut(s) 469, 567, 1907, 2294, 2660
BfuI GTATCC 1 cut(s) 2429
BisI GCNGC 6 cut(s) 195, 1978, 2257, 2271, 2660, 2663
BlsI GCNGC 6 cut(s) 196, 1979, 2258, 2272, 2661, 2664
Bme1390I CCNGG 5 cut(s) 662, 864, 2340, 2409, 2688
Bme18I GGWCC 2 cut(s) 1036, 1249
BmeRI GACNNNNNGTC 1 cut(s) 1098
BmgBI CACGTC 1 cut(s) 1274
BmgT120I GGNCC 3 cut(s) 1036, 1249, 2684
BmiI GGNNCC 7 cut(s) 193, 1037, 1251, 1533, 1743, 2291, 2406
BmrFI CCNGG 5 cut(s) 662, 864, 2340, 2409, 2688
BmsI GCATC 8 cut(s) 600, 628, 792, 895, 1005, 1609, 1787, 2186
BpiI GAAGAC 1 cut(s) 2202
BplI GAGNNNNNCTC 4 cut(s) 35, 67, 37, 69
BpmI CTGGAG 1 cut(s) 303
Bpu10I CCTNAGC 4 cut(s) 614, 1245, 1259, 2055
BpuEI CTTGAG 4 cut(s) 143, 273, 931, 1298
BsaAI YACGTR 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 1067
BsaJI CCNNGG 2 cut(s) 1330, 2686
BsaWI WCCGGW 2 cut(s) 1058, 2033
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 3 cut(s) 2312, 2615, 2692
Bse118I RCCGGY 2 cut(s) 876, 1058
Bse1I ACTGG 3 cut(s) 723, 2244, 2511
Bse21I CCTNAGG 1 cut(s) 1010
Bse3DI GCAATG 4 cut(s) 204, 666, 1886, 2276
BseBI CCWGG 5 cut(s) 662, 864, 2340, 2409, 2688
BseDI CCNNGG 2 cut(s) 1330, 2686
BseGI GGATG 5 cut(s) 979, 1020, 1103, 1624, 1802
BseLI CCNNNNNNNGG 3 cut(s) 2312, 2615, 2692
BseMI GCAATG 4 cut(s) 204, 666, 1886, 2276
BseMII CTCAG 7 cut(s) 68, 1001, 1236, 1237, 1273, 2046, 2273
BseNI ACTGG 3 cut(s) 723, 2244, 2511
BseRI GAGGAG 2 cut(s) 1511, 1724
BseXI GCAGC 5 cut(s) 1989, 2243, 2282, 2646, 2674
BshFI GGCC 2 cut(s) 792, 2685
BshNI GGYRCC 2 cut(s) 1531, 2289
BshTI ACCGGT 1 cut(s) 1058
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 3 cut(s) 877, 1059, 2034
BslFI GGGAC 2 cut(s) 1235, 2755
BslI CCNNNNNNNGG 3 cut(s) 2312, 2615, 2692
BsmAI GTCTC 4 cut(s) 904, 1067, 2185, 2278
BsmBI CGTCTC 2 cut(s) 2185, 2278
BsmFI GGGAC 2 cut(s) 1235, 2755
BsmI GAATGC 1 cut(s) 1341
BsnI GGCC 2 cut(s) 792, 2685
Bso31I GGTCTC 1 cut(s) 1067
Bsp1286I GDGCHC 2 cut(s) 289, 1056
BspACI CCGC 2 cut(s) 195, 1021
BspANI GGCC 2 cut(s) 792, 2685
BspCNI CTCAG 7 cut(s) 67, 1002, 1236, 1237, 1272, 2047, 2274
BspLI GGNNCC 7 cut(s) 193, 1037, 1251, 1533, 1743, 2291, 2406
BspMAI CTGCAG 2 cut(s) 1911, 2664
BspPI GGATC 5 cut(s) 969, 1227, 1865, 1954, 2389
BspT107I GGYRCC 2 cut(s) 1531, 2289
BspTNI GGTCTC 1 cut(s) 1067
BsrDI GCAATG 4 cut(s) 204, 666, 1886, 2276
BsrFI RCCGGY 2 cut(s) 876, 1058
BsrI ACTGG 3 cut(s) 723, 2244, 2511
BssAI RCCGGY 2 cut(s) 876, 1058
BssECI CCNNGG 2 cut(s) 1330, 2686
BssSI CACGAG 1 cut(s) 2733
BssT1I CCWWGG 1 cut(s) 1330
Bst2BI CACGAG 1 cut(s) 2733
Bst2UI CCWGG 5 cut(s) 662, 864, 2340, 2409, 2688
Bst6I CTCTTC 2 cut(s) 639, 1847
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 426, 1668
BstENI CCTNNNNNAGG 1 cut(s) 2310
BstF5I GGATG 5 cut(s) 979, 1020, 1103, 1624, 1802
BstHHI GCGC 1 cut(s) 264
BstMAI GTCTC 4 cut(s) 904, 1067, 2185, 2278
BstMWI GCNNNNNNNGC 3 cut(s) 261, 868, 1672
BstNI CCWGG 5 cut(s) 662, 864, 2340, 2409, 2688
BstSCI CCNGG 5 cut(s) 660, 862, 2338, 2407, 2686
BstSFI CTRYAG 5 cut(s) 469, 567, 1907, 2294, 2660
BstV1I GCAGC 5 cut(s) 1989, 2243, 2282, 2646, 2674
BstV2I GAAGAC 1 cut(s) 2202
BstX2I RGATCY 3 cut(s) 961, 1219, 2381
BstXI CCANNNNNNTGG 2 cut(s) 555, 1528
BstYI RGATCY 3 cut(s) 961, 1219, 2381
Bsu36I CCTNAGG 1 cut(s) 1010
BsuI GTATCC 1 cut(s) 2429
BsuRI GGCC 2 cut(s) 792, 2685
BtgZI GCGATG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 1274
BtsCI GGATG 5 cut(s) 979, 1020, 1103, 1624, 1802
BtsI GCAGTG 3 cut(s) 1405, 1618, 2448
BtsIMutI CAGTG 7 cut(s) 568, 1228, 1405, 1618, 1857, 2398, 2448
Cac8I GCNNGC 2 cut(s) 426, 1668
CaiI CAGNNNCTG 1 cut(s) 1230
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 2 cut(s) 876, 1058
Cfr13I GGNCC 3 cut(s) 1036, 1249, 2684
CseI GACGC 1 cut(s) 995
CsiI ACCWGGT 1 cut(s) 2407
Csp6I GTAC 5 cut(s) 173, 1532, 2290, 2448, 2462
CspAI ACCGGT 1 cut(s) 1058
CspCI CAANNNNNGTGG 2 cut(s) 1596, 1631
CviAII CATG 9 cut(s) 356, 786, 806, 905, 1216, 1793, 2115, 2465, 2566
CviQI GTAC 5 cut(s) 173, 1532, 2290, 2448, 2462
DriI GACNNNNNGTC 1 cut(s) 1098
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 2 cut(s) 639, 1847
Eam1105I GACNNNNNGTC 1 cut(s) 1098
EarI CTCTTC 2 cut(s) 639, 1847
Ecl136II GAGCTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 1330
Eco24I GRGCYC 2 cut(s) 289, 1056
Eco31I GGTCTC 1 cut(s) 1067
Eco32I GATATC 1 cut(s) 2647
Eco47I GGWCC 2 cut(s) 1036, 1249
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 663, 2196
Eco81I CCTNAGG 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 2310
EcoO109I RGGNCCY 1 cut(s) 1249
EcoRII CCWGG 5 cut(s) 660, 862, 2338, 2407, 2686
EcoRV GATATC 1 cut(s) 2647
EcoT14I CCWWGG 1 cut(s) 1330
EcoT22I ATGCAT 2 cut(s) 807, 947
EcoT38I GRGCYC 2 cut(s) 289, 1056
ErhI CCWWGG 1 cut(s) 1330
Esp3I CGTCTC 2 cut(s) 2185, 2278
FaeI CATG 9 cut(s) 359, 789, 809, 908, 1219, 1796, 2118, 2468, 2569
FalI AAGNNNNNCTT 2 cut(s) 1549, 1581
FaqI GGGAC 2 cut(s) 1235, 2755
FatI CATG 9 cut(s) 355, 785, 805, 904, 1215, 1792, 2114, 2464, 2565
FauNDI CATATG 2 cut(s) 1681, 2042
FbaI TGATCA 2 cut(s) 813, 1321
FblI GTMKAC 2 cut(s) 118, 2417
Fnu4HI GCNGC 6 cut(s) 195, 1978, 2257, 2271, 2660, 2663
FokI GGATG 5 cut(s) 966, 1027, 1110, 1631, 1809
FriOI GRGCYC 2 cut(s) 289, 1056
Fsp4HI GCNGC 6 cut(s) 195, 1978, 2257, 2271, 2660, 2663
FspBI CTAG 6 cut(s) 330, 506, 635, 1688, 1833, 2123
GlaI GCGC 1 cut(s) 263
GluI GCNGC 6 cut(s) 195, 1978, 2257, 2271, 2660, 2663
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 792, 2685
HapII CCGG 3 cut(s) 877, 1059, 2034
HgaI GACGC 1 cut(s) 995
HhaI GCGC 1 cut(s) 264
Hin1II CATG 9 cut(s) 359, 789, 809, 908, 1219, 1796, 2118, 2468, 2569
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 1178, 1664
HinfI GANTC 7 cut(s) 48, 913, 950, 1028, 1138, 1282, 1288
HpaII CCGG 3 cut(s) 877, 1059, 2034
HphI GGTGA 5 cut(s) 979, 1048, 1202, 2017, 2579
Hpy99I CGWCG 1 cut(s) 2565
HpyAV CCTTC 5 cut(s) 182, 643, 1289, 1542, 1902
HpyCH4IV ACGT 2 cut(s) 535, 1273
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 868, 1672
HpySE526I ACGT 2 cut(s) 535, 1273
Hsp92II CATG 9 cut(s) 359, 789, 809, 908, 1219, 1796, 2118, 2468, 2569
HspAI GCGC 1 cut(s) 262
KpnI GGTACC 2 cut(s) 1535, 2293
Ksp22I TGATCA 2 cut(s) 813, 1321
LmnI GCTCC 7 cut(s) 191, 284, 309, 1023, 1498, 1711, 1841
Lsp1109I GCAGC 5 cut(s) 1989, 2243, 2282, 2646, 2674
LweI GCATC 8 cut(s) 600, 628, 792, 895, 1005, 1609, 1787, 2186
MabI ACCWGGT 1 cut(s) 2407
MaeI CTAG 6 cut(s) 330, 506, 635, 1688, 1833, 2123
MaeII ACGT 2 cut(s) 535, 1273
MaeIII GTNAC 6 cut(s) 967, 1226, 1934, 2023, 2163, 2730
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 3 cut(s) 961, 1219, 2381
MhlI GDGCHC 2 cut(s) 289, 1056
MlyI GAGTC 3 cut(s) 922, 959, 1291
MmeI TCCRAC 2 cut(s) 376, 2382
Mph1103I ATGCAT 2 cut(s) 807, 947
MslI CAYNNNNRTG 2 cut(s) 1526, 2373
MspA1I CMGCKG 1 cut(s) 2659
MspI CCGG 3 cut(s) 877, 1059, 2034
MspR9I CCNGG 5 cut(s) 662, 864, 2340, 2409, 2688
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 1341
MvaI CCWGG 5 cut(s) 662, 864, 2340, 2409, 2688
MwoI GCNNNNNNNGC 3 cut(s) 261, 868, 1672
NdeI CATATG 2 cut(s) 1681, 2042
NlaIII CATG 9 cut(s) 359, 789, 809, 908, 1219, 1796, 2118, 2468, 2569
NlaIV GGNNCC 7 cut(s) 193, 1037, 1251, 1533, 1743, 2291, 2406
NmuCI GTSAC 6 cut(s) 967, 1226, 1934, 2023, 2163, 2730
NsiI ATGCAT 2 cut(s) 807, 947
PctI GAATGC 1 cut(s) 1341
PfeI GAWTC 4 cut(s) 48, 1028, 1138, 1288
PfoI TCCNGGA 2 cut(s) 660, 2338
PinAI ACCGGT 1 cut(s) 1058
PkrI GCNGC 6 cut(s) 196, 1979, 2258, 2272, 2661, 2664
PleI GAGTC 3 cut(s) 921, 958, 1290
PpsI GAGTC 3 cut(s) 921, 958, 1290
Ppu21I YACGTR 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 1249
PshBI ATTAAT 1 cut(s) 1431
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 1249
Psp6I CCWGG 5 cut(s) 660, 862, 2338, 2407, 2686
PspGI CCWGG 5 cut(s) 660, 862, 2338, 2407, 2686
PspN4I GGNNCC 7 cut(s) 193, 1037, 1251, 1533, 1743, 2291, 2406
PspPI GGNCC 3 cut(s) 1036, 1249, 2684
PspPPI RGGWCCY 1 cut(s) 1249
PstI CTGCAG 2 cut(s) 1911, 2664
PstNI CAGNNNCTG 1 cut(s) 1230
PsuI RGATCY 3 cut(s) 961, 1219, 2381
PvuII CAGCTG 1 cut(s) 2659
RsaI GTAC 5 cut(s) 174, 1533, 2291, 2449, 2463
RsaNI GTAC 5 cut(s) 173, 1532, 2290, 2448, 2462
RseI CAYNNNNRTG 2 cut(s) 1526, 2373
SacI GAGCTC 1 cut(s) 289
SatI GCNGC 6 cut(s) 195, 1978, 2257, 2271, 2660, 2663
Sau96I GGNCC 3 cut(s) 1036, 1249, 2684
SchI GAGTC 3 cut(s) 922, 959, 1291
ScrFI CCNGG 5 cut(s) 662, 864, 2340, 2409, 2688
SduI GDGCHC 2 cut(s) 289, 1056
SexAI ACCWGGT 1 cut(s) 2407
SfaNI GCATC 8 cut(s) 600, 628, 792, 895, 1005, 1609, 1787, 2186
SfcI CTRYAG 5 cut(s) 469, 567, 1907, 2294, 2660
SinI GGWCC 2 cut(s) 1036, 1249
SmiMI CAYNNNNRTG 2 cut(s) 1526, 2373
SmlI CTYRAG 4 cut(s) 122, 288, 910, 1277
SmoI CTYRAG 4 cut(s) 122, 288, 910, 1277
SsiI CCGC 2 cut(s) 195, 1021
SspI AATATT 1 cut(s) 275
SspMI CTAG 6 cut(s) 330, 506, 635, 1688, 1833, 2123
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 5 cut(s) 660, 862, 2338, 2407, 2686
StyI CCWWGG 1 cut(s) 1330
TaiI ACGT 2 cut(s) 538, 1276
TatI WGTACW 2 cut(s) 2447, 2461
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 4 cut(s) 48, 1028, 1138, 1288
TscAI CASTG 7 cut(s) 568, 1235, 1405, 1618, 1857, 2398, 2448
TseFI GTSAC 6 cut(s) 967, 1226, 1934, 2023, 2163, 2730
TseI GCWGC 5 cut(s) 1977, 2256, 2270, 2659, 2662
Tsp45I GTSAC 6 cut(s) 967, 1226, 1934, 2023, 2163, 2730
TspDTI ATGAA 9 cut(s) 201, 414, 774, 1204, 1781, 2361, 2469, 2481, 2649
TspGWI ACGGA 3 cut(s) 704, 2377, 2631
TspRI CASTG 7 cut(s) 568, 1235, 1405, 1618, 1857, 2398, 2448
VpaK11BI GGWCC 2 cut(s) 1036, 1249
VspI ATTAAT 1 cut(s) 1431
XagI CCTNNNNNAGG 1 cut(s) 2310
XapI RAATTY 4 cut(s) 848, 1211, 2048, 2349
XbaI TCTAGA 2 cut(s) 634, 2122
XmiI GTMKAC 2 cut(s) 118, 2417
XspI CTAG 6 cut(s) 330, 506, 635, 1688, 1833, 2123
Zsp2I ATGCAT 2 cut(s) 807, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.