RchiOBHm_Chr1g0322961

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000105
Physical Location & Seq
Reverse (-)
10548163 .. 10554925
6763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55292

Sequence Viewer

Length: 3600 bp
ATGGCGTCAACCTCTTCTCATCGTCAATCGAAATACAATGTCTTTCTAAGTTTCAGGGAGGATACGCGCCTAAGTTTTACCGATCATCTGTATTCTGCACTACGTCAGAGAGGAATTCACACCTATATGGATGACGCAGAGCTTGGGAAAGGAAAATCCATGAGGCCTGAACTTTTAGCTACAATTGAGCAGTGTAGATCTGCTATTGTCATTCTCTCACCCAGCTATGCTCGTTCCTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAAAGATGGGCCAACAAGTCCTCCCCGTCTTCTTCTGGGTGAATCTGTCTCATGTGCGGGACCAAACGGGAAGTTTTGAGCTCAAATGGGAACCCCAAGTAGAAGTAAGGGAACATGAAGAAGTTTATGTGAAGAATGAGGACAGACTAAATGCCTGGAGAGCTGCTTTGACTGATGTCGCCAATATTTCTGGCTGGCATCCCAAGAATTATGTATATCAAACACAACTAATTGAGGAAATTGTTAATCATATACTACCGAAGTCCTCGTATACATCTTCGCATGTTGACAAGGGCTTGATAGGAATGGATTCCCGCATTCATGATTTATTAAGCAATTACATATGTCCACAGCTTGTTGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAGGTAAGACAACACTTGCTCAAGTTATCCATGAAGAAATTTGTCAGGATTTTGACCAAACCTGCTTTCTTTCCAATGTTAGAGAAATGTCTAAATACAATGGCCTAGTTTCTCTACAAAAACAACTTCTTTCCAGAATCCTGATGGCAAAAATTGATTATATAGAGGATGAATACACAGGAGCTGCTATGATAGAAAGGCGGTTGTGTAGAAAAAAGGTGCTTGTTGTTATTGATGATGTGGATCAGTTGACACAATTAGAGAAATTGGCTGGAAGTCGCAACTGGTTTGGTGCAGGGAGTAGAATTATCATAACCACCACAGATATTCAGTTGTTAAATGCATATGATGTTGATGCTACATACAAGGCTAACGGGTTAAATTCCGATGAAGCACTTCAACTTTTGAGTTTGAAGGCTTTTAAGAAATTTAACCCACCAGAAGATTATTTGCGTCTGTGCTACCATATTTTAGGGTATGCTCAGGGGCTTCCATTGGCTCTCGTGGTTTTAGGTTCTTTTCTCTTTCGTAGAAGCGCTGATGAATGGGCAAGTGCAATAGATAGGCTAAAACAGACACCAGATAAACGCATTTTTGAGGTGCTTCGGATTAGTTTTGATGGACTGGATGAAAAAGACAAAGAAATATTCCTACATATTGCTTGCTTTTACAGGGGAAAGGATAAGGATCGTGTGACGCAAATACTAGACTATTGCGAGCTGAACCCTGTCATTGGTTTGAGTGTTCTTGCTGATAGATCTCTCATAACTATCTCCAACAACAAACTGTCAATGAATGATTTGCTACAAGAAATGGGCTGGGAAATTGTTCGTGAACGGTCTCCTAATGAGCCAGGCAAACATAGTAGATTATGGTCTCATGAAGACATCAACTATGTGCTGGAGAGAAATAAGGGAACAGATTCAATCCAAGGCATGGTAATGGAGTTGACTGAATTACAAGTGGCTCATTGGAATCCAGAAGCCTTTGCAAATTTGTCTCAACTTAGACTTCTCCATATTCGTAATGTGGACCTTCCCAAAGGCCTCACTTGTCTTCCTAATTCCTTGGGACTCCTCGAATGGACGGGGTGTCCCTTAAGATCTCTCCCAAAAAAATTTAAAGCAGATGAACTTATTGAACTTAACTTGTGCCACAGCAACATTGAACAGCTTTGGAAGGGAACAAAGAATTTTGACAAGTTGAAGTTCATCAAACTCTGCCATTCTCAAAAAATTGTGGAGACCCCAGACCTCACAGGTGTTCAGAATCTTGAGACTTTAGATCTTGAAGGATGTTCTCATTTGGTAAGAATCCATCAATCCCTTGGATTTCTCAAAAGGCTTATTGTCCTGAATCTTAAAGACTGCAAAAGTCTTGAGAGTCTGCCAAGTAGAATTGAAATGGAATCTCTTGAAACATTAATTCTTTCTAACTGCTCAAAAGTTAAGAAGATTCCTGAGTTTGTTGGAAATATGGAACGTTTGTTGGTGCTTTGTCTTGATGAGACTGCCATTGAGGAACTGCCAGTGTCAATTGAACGGCTGAGTAGCCTTGTGTCATTAAATCTGAGCAATTGCAGAAATCTTGTCTGTCTTCCGAGTACCATCAATAAATTGAAATCTATTAAAGATCTTAATCTTTCTGGATGCTTGAAACTCGGCAAACATCAGGTAAATGTGAGGGTGATGGACTGTTTTGAGGAAACTGATGTGAATAGTGGGTCTGCAATAGAAATGTCGTCTACCCATGATCGCAAGAAAAAAGGGAGAGGTCCACTTTGGCGATCTTTAAAAAAGCTCTGGCCTTCTGGATTGGTGCAAAAAGTGAATACAGAGCCAAAGAGTTTCCACTTGCCTATATCACAAAAAGTGAATACAGAGCCAATGAGTTTCTCCTTGCCTATATCAGGTCTGTGTAATTTAACATATCTGAACCTGAGTAATTCCAATCTTGGTGAAGCAGCATTTGCCAATGAATTTGGTTACTTTCCTTCTTTGGTGACCTTGAATCTAAGTGGAAGCAATTTTGTTCGCCTTCCTTCAGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTAGACTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACAGATTAAACAGATCATATTTCAATTTCATCAATTGTTTCAATCTAAATGGCAATCAAGGATGCAACAACATAGCATTTGAAATGCTGAAGACATTCATGTATCAGGGAATCTCTAGTAAGAGGGAAACTTTTCAAATTGTAATTCCTGGAAATAATATTCCTGAGTGGTTCAGCTGTTGGAATGTTGGATGTTCACTAAGTGTACCTGTACCTGCAGACTGGAATAACAGTCGGTTTTTGGGATTTGCTTTGTGTGCTGTTTTTGCACTCGATGAGCACCATCCAGTCGATGAGCTTTATATGGATGAATTCAAGACTTTCAATGCAACACATCATCTTGTATGTTGCCTGAAGCTCGATGGAAGAGAATTGGAAGTATATGGCAGACAACCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTGAGTCAGATCACCTATGGCTATTCTATGTATCTTGTGATAAATACTTTGGTACAGAGTGGTGGCATAACATTTGCAGTCAGGTTGAGTTCTTATTTAAAACCAGAGGGCCGGGTCTGTATGTGAAGCGGTGTGGAGTCCGTCTGATACATGAGCAAGATGTGCAAGAGTTGAACCAAACAACCACTCAATCAAGCAGAAGCATGTCTCCTTATGAGGATATATTGATTGGTTCTGACATTCCAATTGCAGGGGAAACCAGTGGCACTGGTAGCAGAACTTGCACGCTTGAAGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1199

Amino Acids

136.59

Weight (kDa)

6.37

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 190 2.6e-44 TIR domain
TIR_2 PF13676 14 - 105 3.5e-14 TIR domain
NB-ARC PF00931 214 - 368 4.4e-20 NB-ARC domain
NACHT PF05729 218 - 314 9.8e-07 NACHT domain
WHD_ROQ1 PF23282 435 - 506 1.3e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 604 - 622 3.3e-06 Leucine Rich Repeat
LRR_14 PF23598 635 - 728 5.2e-06 Leucine-rich repeat region
LRR_13 PF23286 695 - 780 8e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 706 - 774 4.3e-08 Leucine-rich repeat region
C-JID PF20160 1006 - 1155 5.5e-14 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 746, 3094, 3274
AccB7I CCANNNNNTGG 1 cut(s) 1612
AccI GTMKAC 3 cut(s) 551, 2420, 2809
AccII CGCG 1 cut(s) 67
AciI CCGC 5 cut(s) 337, 595, 670, 877, 3427
AclI AACGTT 1 cut(s) 2158
AclWI GGATC 4 cut(s) 652, 665, 927, 1371
AcuI CTGAAG 3 cut(s) 2703, 2981, 3245
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 3074
AfaI GTAC 5 cut(s) 2281, 2836, 3078, 3084, 3352
AfeI AGCGCT 1 cut(s) 1213
AfiI CCNNNNNNNGG 4 cut(s) 1409, 1612, 2585, 3548
AflII CTTAAG 1 cut(s) 1774
AhdI GACNNNNNGTC 1 cut(s) 1767
AjnI CCWGG 4 cut(s) 434, 1528, 3019, 3294
AjuI GAANNNNNNNTTGG 4 cut(s) 726, 758, 2741, 2773
Alw21I GWGCWC 2 cut(s) 363, 3153
Alw26I GTCTC 9 cut(s) 333, 1521, 1557, 1680, 1913, 1946, 2177, 2767, 3510
AlwI GGATC 4 cut(s) 652, 665, 927, 1371
AlwNI CAGNNNCTG 1 cut(s) 860
Aor51HI AGCGCT 1 cut(s) 1213
AoxI GGCC 6 cut(s) 164, 289, 778, 1720, 2480, 3407
ApeKI GCWGC 3 cut(s) 443, 860, 2639
AseI ATTAAT 1 cut(s) 2099
Asp700I GAANNNNTTC 6 cut(s) 589, 1071, 1503, 1597, 2966, 3003
AspLEI GCGC 2 cut(s) 69, 1214
AspS9I GGNCC 5 cut(s) 289, 340, 1708, 2450, 3407
AsuC2I CCSGG 1 cut(s) 3411
AsuHPI GGTGA 6 cut(s) 210, 331, 2374, 2645, 2689, 3302
AvaII GGWCC 3 cut(s) 340, 1708, 2450
BamHI GGATCC 1 cut(s) 657
BanII GRGCYC 1 cut(s) 363
BauI CACGAG 1 cut(s) 1178
BbsI GAAGAC 5 cut(s) 301, 1566, 1724, 2264, 2969
Bbv12I GWGCWC 2 cut(s) 363, 3153
BbvI GCAGC 3 cut(s) 430, 847, 2651
BceAI ACGGC 1 cut(s) 2234
BciT130I CCWGG 4 cut(s) 436, 1530, 3021, 3296
BciVI GTATCC 1 cut(s) 55
BcnI CCSGG 1 cut(s) 3411
BcoDI GTCTC 9 cut(s) 333, 1521, 1557, 1680, 1913, 1946, 2177, 2767, 3510
BfaI CTAG 4 cut(s) 782, 1382, 2813, 2988
BfmI CTRYAG 1 cut(s) 3087
BfoI RGCGCY 1 cut(s) 1215
BfrI CTTAAG 1 cut(s) 1774
BfuAI ACCTGC 3 cut(s) 746, 3094, 3274
BfuI GTATCC 1 cut(s) 55
BglII AGATCT 5 cut(s) 197, 1433, 1778, 1960, 2308
BisI GCNGC 3 cut(s) 444, 861, 2640
BlsI GCNGC 3 cut(s) 445, 862, 2641
Bme1390I CCNGG 5 cut(s) 436, 1530, 3021, 3296, 3411
Bme18I GGWCC 3 cut(s) 340, 1708, 2450
BmeRI GACNNNNNGTC 1 cut(s) 1767
BmgT120I GGNCC 5 cut(s) 289, 340, 1708, 2450, 3407
BmiI GGNNCC 3 cut(s) 341, 372, 659
BmrFI CCNGG 5 cut(s) 436, 1530, 3021, 3296, 3411
BmsI GCATC 6 cut(s) 487, 1021, 2315, 2848, 2870, 2924
BoxI GACNNNNGTC 1 cut(s) 455
BpiI GAAGAC 5 cut(s) 301, 1566, 1724, 2264, 2969
BpmI CTGGAG 2 cut(s) 457, 1598
Bpu10I CCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 4 cut(s) 681, 1970, 2075, 2765
BpuMI CCSGG 1 cut(s) 3411
BsaBI GATNNNNATC 3 cut(s) 918, 1362, 2313
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 3 cut(s) 1521, 1557, 1913
BsaJI CCNNGG 4 cut(s) 661, 1606, 1743, 2002
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 4 cut(s) 1409, 1612, 2585, 3548
Bse1I ACTGG 7 cut(s) 965, 1305, 2204, 3098, 3158, 3558, 3571
Bse8I GATNNNNATC 3 cut(s) 918, 1362, 2313
BseBI CCWGG 4 cut(s) 436, 1530, 3021, 3296
BseDI CCNNGG 4 cut(s) 661, 1606, 1743, 2002
BseJI GATNNNNATC 3 cut(s) 918, 1362, 2313
BseLI CCNNNNNNNGG 4 cut(s) 1409, 1612, 2585, 3548
BseMII CTCAG 6 cut(s) 1172, 2127, 2213, 2237, 2606, 3027
BseNI ACTGG 7 cut(s) 965, 1305, 2204, 3098, 3158, 3558, 3571
BseRI GAGGAG 1 cut(s) 1742
BseXI GCAGC 3 cut(s) 430, 847, 2651
BseYI CCCAGC 2 cut(s) 221, 1494
BsgI GTGCAG 2 cut(s) 81, 990
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 6 cut(s) 166, 291, 780, 1722, 2482, 3409
BsiHKAI GWGCWC 2 cut(s) 363, 3153
BsiSI CCGG 1 cut(s) 3410
BslFI GGGAC 3 cut(s) 353, 1755, 1761
BslI CCNNNNNNNGG 4 cut(s) 1409, 1612, 2585, 3548
BsmAI GTCTC 9 cut(s) 333, 1521, 1557, 1680, 1913, 1946, 2177, 2767, 3510
BsmFI GGGAC 3 cut(s) 353, 1755, 1761
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 6 cut(s) 166, 291, 780, 1722, 2482, 3409
Bso31I GGTCTC 3 cut(s) 1521, 1557, 1913
Bsp1286I GDGCHC 2 cut(s) 363, 3153
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 5 cut(s) 337, 595, 670, 877, 3427
BspANI GGCC 6 cut(s) 166, 291, 780, 1722, 2482, 3409
BspCNI CTCAG 6 cut(s) 1171, 2128, 2214, 2238, 2607, 3028
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 2 cut(s) 601, 1555
BspLI GGNNCC 3 cut(s) 341, 372, 659
BspMAI CTGCAG 1 cut(s) 3091
BspMI ACCTGC 3 cut(s) 746, 3094, 3274
BspPI GGATC 4 cut(s) 652, 665, 927, 1371
BspTI CTTAAG 1 cut(s) 1774
BspTNI GGTCTC 3 cut(s) 1521, 1557, 1913
BsrI ACTGG 7 cut(s) 965, 1305, 2204, 3098, 3158, 3558, 3571
BssECI CCNNGG 4 cut(s) 661, 1606, 1743, 2002
BssNAI GTATAC 1 cut(s) 552
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1178
BssT1I CCWWGG 4 cut(s) 661, 1606, 1743, 2002
Bst1107I GTATAC 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 1178
Bst2UI CCWGG 4 cut(s) 436, 1530, 3021, 3296
Bst4CI ACNGT 4 cut(s) 1464, 1515, 2372, 3104
Bst6I CTCTTC 2 cut(s) 19, 3232
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1774
BstAPI GCANNNNNTGC 3 cut(s) 2645, 3460, 3579
BstC8I GCNNGC 5 cut(s) 476, 668, 1339, 1394, 3584
BstDSI CCRYGG 1 cut(s) 661
BstEII GGTNACC 1 cut(s) 2677
BstENI CCTNNNNNAGG 1 cut(s) 2583
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 1215
BstHHI GCGC 2 cut(s) 69, 1214
BstMAI GTCTC 9 cut(s) 333, 1521, 1557, 1680, 1913, 1946, 2177, 2767, 3510
BstMWI GCNNNNNNNGC 9 cut(s) 440, 672, 2645, 2740, 3128, 3137, 3460, 3570, 3579
BstNI CCWGG 4 cut(s) 436, 1530, 3021, 3296
BstNSI RCATGY 3 cut(s) 566, 670, 3505
BstPAI GACNNNNGTC 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 2677
BstSCI CCNGG 5 cut(s) 434, 1528, 3019, 3294, 3409
BstSFI CTRYAG 1 cut(s) 3087
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 430, 847, 2651
BstV2I GAAGAC 5 cut(s) 301, 1566, 1724, 2264, 2969
BstX2I RGATCY 6 cut(s) 197, 657, 1433, 1778, 1960, 2308
BstYI RGATCY 6 cut(s) 197, 657, 1433, 1778, 1960, 2308
BstZ17I GTATAC 1 cut(s) 552
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 6 cut(s) 166, 291, 780, 1722, 2482, 3409
BtgI CCRYGG 1 cut(s) 661
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 5 cut(s) 197, 2211, 2840, 3564, 3565
BveI ACCTGC 3 cut(s) 746, 3094, 3274
Cac8I GCNNGC 5 cut(s) 476, 668, 1339, 1394, 3584
CaiI CAGNNNCTG 1 cut(s) 860
CciI TCATGA 2 cut(s) 601, 1555
CfoI GCGC 2 cut(s) 69, 1214
Cfr13I GGNCC 5 cut(s) 289, 340, 1708, 2450, 3407
CseI GACGC 3 cut(s) 143, 1118, 1381
Csp6I GTAC 5 cut(s) 2280, 2835, 3077, 3083, 3351
CviQI GTAC 5 cut(s) 2280, 2835, 3077, 3083, 3351
DraI TTTAAA 3 cut(s) 1798, 2469, 3397
DraIII CACNNNGTG 1 cut(s) 3074
DriI GACNNNNNGTC 1 cut(s) 1767
Eam1104I CTCTTC 2 cut(s) 19, 3232
Eam1105I GACNNNNNGTC 1 cut(s) 1767
EarI CTCTTC 2 cut(s) 19, 3232
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 4 cut(s) 661, 1606, 1743, 2002
Eco147I AGGCCT 2 cut(s) 166, 1722
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 3 cut(s) 1521, 1557, 1913
Eco47I GGWCC 3 cut(s) 340, 1708, 2450
Eco47III AGCGCT 1 cut(s) 1213
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 3 cut(s) 2703, 2981, 3245
Eco91I GGTNACC 1 cut(s) 2677
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 2583
EcoO65I GGTNACC 1 cut(s) 2677
EcoRI GAATTC 2 cut(s) 114, 3182
EcoRII CCWGG 4 cut(s) 434, 1528, 3019, 3294
EcoT14I CCWWGG 4 cut(s) 661, 1606, 1743, 2002
EcoT22I ATGCAT 3 cut(s) 278, 1021, 2863
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 4 cut(s) 661, 1606, 1743, 2002
FaqI GGGAC 3 cut(s) 353, 1755, 1761
FauI CCCGC 3 cut(s) 330, 602, 663
FauNDI CATATG 2 cut(s) 623, 1021
FblI GTMKAC 3 cut(s) 551, 2420, 2809
Fnu4HI GCNGC 3 cut(s) 444, 861, 2640
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 444, 861, 2640
FspBI CTAG 4 cut(s) 782, 1382, 2813, 2988
GlaI GCGC 2 cut(s) 68, 1213
GluI GCNGC 3 cut(s) 444, 861, 2640
GsaI CCCAGC 2 cut(s) 225, 1498
GsuI CTGGAG 2 cut(s) 457, 1598
HaeII RGCGCY 1 cut(s) 1215
HaeIII GGCC 6 cut(s) 166, 291, 780, 1722, 2482, 3409
HapII CCGG 1 cut(s) 3410
HgaI GACGC 3 cut(s) 143, 1118, 1381
HhaI GCGC 2 cut(s) 69, 1214
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 2 cut(s) 67, 1212
HinP1I GCGC 2 cut(s) 67, 1212
HincII GTYRAC 4 cut(s) 9, 568, 927, 1626
HindII GTYRAC 4 cut(s) 9, 568, 927, 1626
HindIII AAGCTT 1 cut(s) 2741
HpaII CCGG 1 cut(s) 3410
HphI GGTGA 6 cut(s) 210, 331, 2374, 2645, 2689, 3302
HpyAV CCTTC 9 cut(s) 1084, 1721, 1849, 1961, 2493, 2679, 2723, 2727, 2804
HpyCH4III ACNGT 4 cut(s) 1464, 1515, 2372, 3104
HpyCH4IV ACGT 2 cut(s) 103, 2158
HpyF10VI GCNNNNNNNGC 9 cut(s) 440, 672, 2645, 2740, 3128, 3137, 3460, 3570, 3579
HpySE526I ACGT 2 cut(s) 103, 2158
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 2 cut(s) 67, 1212
LmnI GCTCC 1 cut(s) 857
Lsp1109I GCAGC 3 cut(s) 430, 847, 2651
LweI GCATC 6 cut(s) 487, 1021, 2315, 2848, 2870, 2924
MaeI CTAG 4 cut(s) 782, 1382, 2813, 2988
MaeII ACGT 2 cut(s) 103, 2158
MaeIII GTNAC 3 cut(s) 1369, 2660, 2677
MfeI CAATTG 5 cut(s) 183, 2211, 2251, 2905, 3543
MflI RGATCY 6 cut(s) 197, 657, 1433, 1778, 1960, 2308
MhlI GDGCHC 2 cut(s) 363, 3153
MlyI GAGTC 4 cut(s) 1743, 2068, 3311, 3444
MmeI TCCRAC 4 cut(s) 1476, 2125, 3032, 3040
Mph1103I ATGCAT 3 cut(s) 278, 1021, 2863
MroXI GAANNNNTTC 6 cut(s) 589, 1071, 1503, 1597, 2966, 3003
MslI CAYNNNNRTG 2 cut(s) 125, 1616
MspA1I CMGCKG 1 cut(s) 3048
MspCI CTTAAG 1 cut(s) 1774
MspI CCGG 1 cut(s) 3410
MspR9I CCNGG 5 cut(s) 436, 1530, 3021, 3296, 3411
MunI CAATTG 5 cut(s) 183, 2211, 2251, 2905, 3543
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 4 cut(s) 436, 1530, 3021, 3296
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 9 cut(s) 440, 672, 2645, 2740, 3128, 3137, 3460, 3570, 3579
NciI CCSGG 1 cut(s) 3411
NcoI CCATGG 1 cut(s) 661
NdeI CATATG 2 cut(s) 623, 1021
NlaIV GGNNCC 3 cut(s) 341, 372, 659
NmeAIII GCCGAG 1 cut(s) 2316
NmuCI GTSAC 2 cut(s) 1369, 2677
NsiI ATGCAT 3 cut(s) 278, 1021, 2863
NspI RCATGY 3 cut(s) 566, 670, 3505
PaeI GCATGC 1 cut(s) 670
PagI TCATGA 2 cut(s) 601, 1555
PceI AGGCCT 2 cut(s) 166, 1722
PctI GAATGC 1 cut(s) 597
PdmI GAANNNNTTC 6 cut(s) 589, 1071, 1503, 1597, 2966, 3003
PflMI CCANNNNNTGG 1 cut(s) 1612
PfoI TCCNGGA 1 cut(s) 3019
PkrI GCNGC 3 cut(s) 445, 862, 2641
PleI GAGTC 4 cut(s) 1743, 2067, 3310, 3443
PpsI GAGTC 4 cut(s) 1743, 2067, 3310, 3443
PshAI GACNNNNGTC 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 2099
Psp124BI GAGCTC 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 2158
Psp6I CCWGG 4 cut(s) 434, 1528, 3019, 3294
PspEI GGTNACC 1 cut(s) 2677
PspFI CCCAGC 2 cut(s) 221, 1494
PspGI CCWGG 4 cut(s) 434, 1528, 3019, 3294
PspN4I GGNNCC 3 cut(s) 341, 372, 659
PspPI GGNCC 5 cut(s) 289, 340, 1708, 2450, 3407
PstI CTGCAG 1 cut(s) 3091
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 6 cut(s) 197, 657, 1433, 1778, 1960, 2308
PvuII CAGCTG 1 cut(s) 3048
RsaI GTAC 5 cut(s) 2281, 2836, 3078, 3084, 3352
RsaNI GTAC 5 cut(s) 2280, 2835, 3077, 3083, 3351
RseI CAYNNNNRTG 2 cut(s) 125, 1616
SacI GAGCTC 1 cut(s) 363
SatI GCNGC 3 cut(s) 444, 861, 2640
Sau96I GGNCC 5 cut(s) 289, 340, 1708, 2450, 3407
SchI GAGTC 4 cut(s) 1743, 2068, 3311, 3444
ScrFI CCNGG 5 cut(s) 436, 1530, 3021, 3296, 3411
SduI GDGCHC 2 cut(s) 363, 3153
SfaNI GCATC 6 cut(s) 487, 1021, 2315, 2848, 2870, 2924
SfcI CTRYAG 1 cut(s) 3087
SinI GGWCC 3 cut(s) 340, 1708, 2450
SmiMI CAYNNNNRTG 2 cut(s) 125, 1616
SmlI CTYRAG 5 cut(s) 696, 1774, 1949, 2054, 2744
SmoI CTYRAG 5 cut(s) 696, 1774, 1949, 2054, 2744
SphI GCATGC 1 cut(s) 670
SseBI AGGCCT 2 cut(s) 166, 1722
SsiI CCGC 5 cut(s) 337, 595, 670, 877, 3427
SspI AATATT 3 cut(s) 466, 1323, 3031
SspMI CTAG 4 cut(s) 782, 1382, 2813, 2988
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 2 cut(s) 166, 1722
StyD4I CCNGG 5 cut(s) 434, 1528, 3019, 3294, 3409
StyI CCWWGG 4 cut(s) 661, 1606, 1743, 2002
TaaI ACNGT 4 cut(s) 1464, 1515, 2372, 3104
TaiI ACGT 2 cut(s) 106, 2161
TaqI TCGA 5 cut(s) 29, 1755, 3144, 3162, 3231
TatI WGTACW 1 cut(s) 2834
TscAI CASTG 5 cut(s) 197, 2211, 2847, 3565, 3571
TseFI GTSAC 2 cut(s) 1369, 2677
TseI GCWGC 3 cut(s) 443, 860, 2639
Tsp45I GTSAC 2 cut(s) 1369, 2677
TspGWI ACGGA 1 cut(s) 3428
TspRI CASTG 5 cut(s) 197, 2211, 2847, 3565, 3571
Van91I CCANNNNNTGG 1 cut(s) 1612
Vha464I CTTAAG 1 cut(s) 1774
VpaK11BI GGWCC 3 cut(s) 340, 1708, 2450
VspI ATTAAT 1 cut(s) 2099
XagI CCTNNNNNAGG 1 cut(s) 2583
XceI RCATGY 3 cut(s) 566, 670, 3505
XcmI CCANNNNNNNNNTGG 2 cut(s) 817, 2000
XmiI GTMKAC 3 cut(s) 551, 2420, 2809
XmnI GAANNNNTTC 6 cut(s) 589, 1071, 1503, 1597, 2966, 3003
XspI CTAG 4 cut(s) 782, 1382, 2813, 2988
Zsp2I ATGCAT 3 cut(s) 278, 1021, 2863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.