Rorug01G0036200

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
6083428 .. 6086187
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0036200.1

Sequence Viewer

Length: 2760 bp
ATGGCAGAGGGTTTTATTCAGCAGCCAGAAGGAAGTAGACAGATGGAAGATATTGGGGACAACTATTTTGAGGAGCTGTTATCTAGGTCATTATTTCAAAAGTCGAGCAAAAGTAATTCACTTTATGTAATGCATGACCTTGTTGGTGATTTGGCACGGTGGGCCTCTGGCGATACATATTTCAGATTGGAGGATAAGGTGGATGGCAAATGCTCTCCAAAGACTCGCCATTCTTCTTACATTTCTGGTAAGTTTGATGGGCTCACCAAATTTGAAAAGGCATTCTCTGAAGCAAAGAGTTTGCGAACTTTTCTGCCACTTTCAATCTCACATGGTCATGAGAATTACCTAACTTGTAAGATTACTTTTGATAAGTTGCCAAAGTTGGAGTGTTTACGAGTACTTTCTTTGAATGGCTATCAAATAACTCTGTTGCCGGAATCAATTGGTCATCTGAAGCATCTACGGTACCTTGATCTATCTCACACACTCATAACAAGTTTGCCTGAATCAACAACCACCCTTTACAACCTGCAGACATTGATATTAGAAAATTGTTCTCGATTGAAGGCACTACCTGCAAAACTGAAGAATTTGACAAAATTACGTCATCTGAACAGCTCATATGTGCCTTCATTGGAAGGAATGCCTCCTCAGCTAAGTCAACTGACTAATCTCCAAACATTATCTAATTTTGTGGTGGGCAAAGGAAATGTGTCAAGGGTCGGAGAGATAGGGCCTCTATCGCTTCGTTGGACATTGTGCCTCAAAAGATTGGAAAATGTGACTGATGTTGAGGATGCAACAAGGGCAAACTTATTGAGCAAGCAAGGGCTTGATGCACTACAACTAGAATGGAGTGGCACTGATGGAAAGGAATCAGAAGTTCTTGACGTGCTAAAACCACACATAAACCTTAAAGAGCTCATCATCAAGGGTTATAACGGTTTGGAATTTCCAACATGGATTCAGCATCCTTTGTTCTCTGAAATGACCCTTGTGGCGTTAGAGAATTGTAAAAAATGTCGATTCTTGCCAGCACTTGGCCAATTACATTCTCTGAAACAACTCTTTATAAAAGGAATGTCTAGTGTTGAAAGTGTGGGTCCTGAGTTTTATGGGAAGGCTGAGGGCTTGCCTTTTCCCGTATTAGAAACTCTTGAGTTCAAGGATATGGAAGATTGGAAGGAGTGGTTGCCTTGGGAACAAAGTCAAGGAAATGGAGTTTTCCCTTGCCTAAAAATGCTTTCCATCTCCACATGCCCCAAACTGAAAGGTAGCTTACCCAAGAATATTCATTTATTATCAAAGCTTGTGATTGATGGATGTGAGCAGTTGGTTGTTTCAACTACCAATTATAAACTGATTCGCGAGTTAAATATATGTGGTTGTAAATGGACAGTGGATAAAAGTGGGGTAAAGTTTGAGTTATTAGAGGCCATGGAGCTTTCAAGTATTTCAGAGTTCAGATTTGAAACAGAAGAATTCCTGAAAGGATTTACACAGCTTAAAAATTTAAAGACTACTGGTTGTGAAGAGCTGACATCTTTATGGAAGAGTAGGAATAGATGGCTGCAACATCGCATTGGCAACTCTCAGTCTCACTTTGTTCAAGAGCTGGTGTCACTTCAACGACTACACATCATTGGATGCTCAAATCTAATTTCTTTTCCAGAAGTTGATTTGCCACCTTTTCTGAAACACTTGAAGATTGAGTCATGCAGTTCCCTTGCATATTTTACTAAATCTCATATGCCCCTATCTCTAAGGAGAATAGAGATTGGAGATTGCTTGAATCTTAAATCATTAGTGGAGGGAGAAGCGTCTTCGTCTTCGTCTTCTTCTTGTTTGATGAATGAGGAGGCATCCTCTCTTGAGTGCTTGAAGATATGGAAGTGTCCATCTTTGACTTCCTTATTGGACAGAAGCCAACTGCCCAGGGCACTTGAACAACTTTACTTATGGGATTGTGAACAACTGGAGTCAATAACTGATAAGTTCCAGGACAACACTAGTCTTGAATGTGTTGATATACGGCGTTGTCCAAATCTTAAATCATTACCGGAGCACCTGTGCTACCTCACCAATCTTCAAAAGTTATATATTTTTCAGTGTGGAAGTCTAGTTTCCTTCCCTAGAGGAGGGTTGCCAAATACAGCCTCCAACCTCACAACCATCTGTATATGGGACTTGAAATTGACTGCCCTCCCTGAAGGCATGGTCAAGCACAACCTCAGCTCTCTTCAGAGATTAACAATCGCTTACTGTAAAGGTTTGGTGTCCATTCTAGAAGAGGGTTTTCCCTCAAACCTAACAGTACTTAAAATTGTAGATCCCAAGAGTTGTAAGCCACTCTCTGAGTGGGGGTTGCAGTTGAAGAAACTCACCTCTCTAAAAGAGTTGTGGATCTCTGGTGTAGATCCATATCTGGTGTCCTTTCCACCAGAGGATATAGAGTTGATGCTCCCTAAATCCCTCAGTAGACTTGACATTGCAAGCTTCCCAAGTCTGAGGCGCCTATCCAGGAAGGCCCTTCAGTCCCTCACCTCTCTTGAATATCTTGAGATTGCTAATTGTCAAAAGCTACCATCCATTCCAGAGAAGTATCTGCCTCTTTCACTTGCAAAACTTCACATATATGCATGTCCGAAGCTGAAAGATAGGTACACTTGCAACACATCATACTGGTCTAAAATAGCTCACATCCCTTGCGTACATATTGGAGATGAGTATTTGAACTCACTGAAGACTCACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

919

Amino Acids

103.97

Weight (kDa)

7.95

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 52 8.8e-16 Disease resistance protein Winged helix domain
LRR_14 PF23598 124 - 417 1.4e-25 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 249 - 362 1.9e-31 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 942, 1076, 1359
Acc36I ACCTGC 2 cut(s) 540, 586
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 468, 2514
AccB7I CCANNNNNTGG 1 cut(s) 1043
AccI GTMKAC 2 cut(s) 37, 2482
AccII CGCG 1 cut(s) 1371
AclWI GGATC 3 cut(s) 2327, 2414, 2414
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 5 cut(s) 269, 592, 953, 1484, 1513
AcuI CTGAAG 6 cut(s) 309, 476, 608, 2228, 2232, 2519
AcyI GRCGYC 1 cut(s) 2515
AfaI GTAC 5 cut(s) 402, 470, 2319, 2666, 2715
AfiI CCNNNNNNNGG 2 cut(s) 1043, 2141
AhlI ACTAGT 1 cut(s) 2012
AjiI CACGTC 1 cut(s) 895
AjnI CCWGG 3 cut(s) 1937, 2001, 2522
Alw21I GWGCWC 2 cut(s) 927, 2070
Alw26I GTCTC 1 cut(s) 1605
AlwI GGATC 3 cut(s) 2327, 2414, 2414
AoxI GGCC 5 cut(s) 162, 737, 1045, 1437, 2529
ApeKI GCWGC 2 cut(s) 22, 1573
ApoI RAATTY 5 cut(s) 269, 592, 953, 1484, 1513
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 1 cut(s) 2517
AspS9I GGNCC 4 cut(s) 162, 737, 1106, 2530
AsuHPI GGTGA 5 cut(s) 158, 256, 2074, 2377, 2536
AvaII GGWCC 1 cut(s) 1106
BaeGI GKGCMC 1 cut(s) 1945
BalI TGGCCA 1 cut(s) 1047
BanI GGYRCC 2 cut(s) 468, 2514
BanII GRGCYC 2 cut(s) 264, 927
BbsI GAAGAC 4 cut(s) 1818, 1824, 1830, 2753
Bbv12I GWGCWC 2 cut(s) 927, 2070
BbvCI CCTCAGC 3 cut(s) 654, 1128, 2234
BbvI GCAGC 2 cut(s) 34, 1560
BceAI ACGGC 1 cut(s) 2051
BciT130I CCWGG 3 cut(s) 1939, 2003, 2524
BcoDI GTCTC 1 cut(s) 1605
BcuI ACTAGT 1 cut(s) 2012
BfaI CTAG 7 cut(s) 84, 851, 1089, 2013, 2123, 2136, 2288
BfmI CTRYAG 1 cut(s) 533
BfoI RGCGCY 1 cut(s) 2518
BfuAI ACCTGC 2 cut(s) 540, 586
BisI GCNGC 2 cut(s) 23, 1574
BlsI GCNGC 2 cut(s) 24, 1575
BmcAI AGTACT 2 cut(s) 402, 2319
Bme1390I CCNGG 3 cut(s) 1939, 2003, 2524
Bme18I GGWCC 1 cut(s) 1106
BmgBI CACGTC 1 cut(s) 895
BmgT120I GGNCC 4 cut(s) 162, 737, 1106, 2530
BmiI GGNNCC 3 cut(s) 470, 1107, 2516
BmrFI CCNGG 3 cut(s) 1939, 2003, 2524
BmsI GCATC 7 cut(s) 469, 790, 829, 982, 1640, 1874, 2451
BpiI GAAGAC 4 cut(s) 1818, 1824, 1830, 2753
BplI GAGNNNNNCTC 2 cut(s) 1853, 1885
BpmI CTGGAG 1 cut(s) 2000
Bpu10I CCTNAGC 3 cut(s) 654, 1128, 2234
BpuEI CTTGAG 3 cut(s) 1181, 1895, 2582
BsaBI GATNNNNATC 1 cut(s) 2424
BsaHI GRCGYC 1 cut(s) 2515
BsaJI CCNNGG 4 cut(s) 1199, 1440, 1937, 1938
BsaWI WCCGGW 1 cut(s) 2062
BsaXI ACNNNNNCTCC 2 cut(s) 2057, 2087
Bsc4I CCNNNNNNNGG 2 cut(s) 1043, 2141
Bse1I ACTGG 3 cut(s) 1531, 1983, 2690
Bse3DI GCAATG 1 cut(s) 2490
Bse8I GATNNNNATC 1 cut(s) 2424
BseBI CCWGG 3 cut(s) 1939, 2003, 2524
BseDI CCNNGG 4 cut(s) 1199, 1440, 1937, 1938
BseGI GGATG 8 cut(s) 208, 805, 973, 1331, 1655, 1865, 2588, 2703
BseJI GATNNNNATC 1 cut(s) 2424
BseLI CCNNNNNNNGG 2 cut(s) 1043, 2141
BseMI GCAATG 1 cut(s) 2490
BseMII CTCAG 8 cut(s) 668, 1101, 1119, 1610, 2248, 2349, 2491, 2501
BseNI ACTGG 3 cut(s) 1531, 1983, 2690
BseRI GAGGAG 4 cut(s) 86, 642, 1874, 2154
BseSI GKGCMC 1 cut(s) 1945
BseXI GCAGC 2 cut(s) 34, 1560
Bsh1236I CGCG 1 cut(s) 1371
BshFI GGCC 5 cut(s) 164, 739, 1047, 1439, 2531
BshNI GGYRCC 2 cut(s) 468, 2514
BsiHKAI GWGCWC 2 cut(s) 927, 2070
BsiSI CCGG 2 cut(s) 437, 2063
BslFI GGGAC 3 cut(s) 71, 2201, 2524
BslI CCNNNNNNNGG 2 cut(s) 1043, 2141
BsmAI GTCTC 1 cut(s) 1605
BsmFI GGGAC 3 cut(s) 71, 2201, 2524
BsmI GAATGC 2 cut(s) 281, 651
BsnI GGCC 5 cut(s) 164, 739, 1047, 1439, 2531
Bsp1286I GDGCHC 4 cut(s) 264, 927, 1945, 2070
Bsp143I GATC 4 cut(s) 475, 2332, 2406, 2419
Bsp19I CCATGG 1 cut(s) 1440
Bsp68I TCGCGA 1 cut(s) 1371
BspANI GGCC 5 cut(s) 164, 739, 1047, 1439, 2531
BspCNI CTCAG 8 cut(s) 667, 1102, 1120, 1609, 2247, 2350, 2490, 2502
BspFNI CGCG 1 cut(s) 1371
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 470, 1107, 2516
BspMAI CTGCAG 1 cut(s) 537
BspMI ACCTGC 2 cut(s) 540, 586
BspPI GGATC 3 cut(s) 2327, 2414, 2414
BspQI GCTCTTC 1 cut(s) 1530
BspT107I GGYRCC 2 cut(s) 468, 2514
BsrDI GCAATG 1 cut(s) 2490
BsrI ACTGG 3 cut(s) 1531, 1983, 2690
BssECI CCNNGG 4 cut(s) 1199, 1440, 1937, 1938
BssMI GATC 4 cut(s) 475, 2332, 2406, 2419
BssNI GRCGYC 1 cut(s) 2515
BssT1I CCWWGG 2 cut(s) 1199, 1440
Bst2UI CCWGG 3 cut(s) 1939, 2003, 2524
Bst4CI ACNGT 6 cut(s) 159, 468, 947, 1402, 2267, 2317
Bst6I CTCTTC 4 cut(s) 1530, 1550, 2247, 2286
BstACI GRCGYC 1 cut(s) 2515
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 4 cut(s) 827, 1038, 1136, 2497
BstDSI CCRYGG 1 cut(s) 1440
BstENI CCTNNNNNAGG 1 cut(s) 2139
BstF5I GGATG 8 cut(s) 208, 805, 973, 1331, 1655, 1865, 2588, 2703
BstFNI CGCG 1 cut(s) 1371
BstH2I RGCGCY 1 cut(s) 2518
BstHHI GCGC 1 cut(s) 2517
BstKTI GATC 4 cut(s) 478, 2335, 2409, 2422
BstMAI GTCTC 1 cut(s) 1605
BstMBI GATC 4 cut(s) 475, 2332, 2406, 2419
BstMWI GCNNNNNNNGC 5 cut(s) 161, 578, 655, 745, 809
BstNI CCWGG 3 cut(s) 1939, 2003, 2524
BstNSI RCATGY 2 cut(s) 1263, 2646
BstSCI CCNGG 3 cut(s) 1937, 2001, 2522
BstSFI CTRYAG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 1945
BstUI CGCG 1 cut(s) 1371
BstV1I GCAGC 2 cut(s) 34, 1560
BstV2I GAAGAC 4 cut(s) 1818, 1824, 1830, 2753
BstX2I RGATCY 3 cut(s) 2332, 2406, 2419
BstYI RGATCY 3 cut(s) 2332, 2406, 2419
BsuRI GGCC 5 cut(s) 164, 739, 1047, 1439, 2531
BtgI CCRYGG 1 cut(s) 1440
BtgZI GCGATG 1 cut(s) 1565
BtrI CACGTC 1 cut(s) 895
BtsCI GGATG 8 cut(s) 208, 805, 973, 1331, 1655, 1865, 2588, 2703
BtsIMutI CAGTG 4 cut(s) 864, 1407, 2117, 2741
BtuMI TCGCGA 1 cut(s) 1371
BveI ACCTGC 2 cut(s) 540, 586
Cac8I GCNNGC 4 cut(s) 827, 1038, 1136, 2497
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 2517
Cfr13I GGNCC 4 cut(s) 162, 737, 1106, 2530
CseI GACGC 1 cut(s) 1812
Csp6I GTAC 5 cut(s) 401, 469, 2318, 2665, 2714
CviAII CATG 9 cut(s) 134, 332, 338, 963, 1260, 1441, 1719, 2218, 2643
CviQI GTAC 5 cut(s) 401, 469, 2318, 2665, 2714
DinI GGCGCC 1 cut(s) 2516
DpnI GATC 4 cut(s) 477, 2334, 2408, 2421
DpnII GATC 4 cut(s) 475, 2332, 2406, 2419
DraI TTTAAA 1 cut(s) 1518
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 4 cut(s) 1530, 1550, 2247, 2286
EarI CTCTTC 4 cut(s) 1530, 1550, 2247, 2286
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 2 cut(s) 1199, 1440
Eco24I GRGCYC 2 cut(s) 264, 927
Eco47I GGWCC 1 cut(s) 1106
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 6 cut(s) 309, 476, 608, 2228, 2232, 2519
EcoICRI GAGCTC 1 cut(s) 925
EcoNI CCTNNNNNAGG 1 cut(s) 2139
EcoO109I RGGNCCY 3 cut(s) 737, 1106, 2530
EcoRI GAATTC 1 cut(s) 1484
EcoRII CCWGG 3 cut(s) 1937, 2001, 2522
EcoT14I CCWWGG 2 cut(s) 1199, 1440
EcoT22I ATGCAT 2 cut(s) 135, 2644
EcoT38I GRGCYC 2 cut(s) 264, 927
EgeI GGCGCC 1 cut(s) 2516
EheI GGCGCC 1 cut(s) 2516
ErhI CCWWGG 2 cut(s) 1199, 1440
FaeI CATG 9 cut(s) 137, 335, 341, 966, 1263, 1444, 1722, 2221, 2646
FaqI GGGAC 3 cut(s) 71, 2201, 2524
FatI CATG 9 cut(s) 133, 331, 337, 962, 1259, 1440, 1718, 2217, 2642
FauNDI CATATG 2 cut(s) 625, 1752
FblI GTMKAC 2 cut(s) 37, 2482
Fnu4HI GCNGC 2 cut(s) 23, 1574
FokI GGATG 8 cut(s) 215, 812, 960, 1338, 1662, 1852, 2575, 2690
FriOI GRGCYC 2 cut(s) 264, 927
Fsp4HI GCNGC 2 cut(s) 23, 1574
FspBI CTAG 7 cut(s) 84, 851, 1089, 2013, 2123, 2136, 2288
GlaI GCGC 1 cut(s) 2516
GluI GCNGC 2 cut(s) 23, 1574
GsuI CTGGAG 1 cut(s) 2000
HaeII RGCGCY 1 cut(s) 2518
HaeIII GGCC 5 cut(s) 164, 739, 1047, 1439, 2531
HapII CCGG 2 cut(s) 437, 2063
HgaI GACGC 1 cut(s) 1812
HhaI GCGC 1 cut(s) 2517
Hin1I GRCGYC 1 cut(s) 2515
Hin1II CATG 9 cut(s) 137, 335, 341, 966, 1263, 1444, 1722, 2221, 2646
Hin6I GCGC 1 cut(s) 2515
HinP1I GCGC 1 cut(s) 2515
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HindIII AAGCTT 2 cut(s) 1310, 2497
HpaII CCGG 2 cut(s) 437, 2063
HphI GGTGA 5 cut(s) 158, 256, 2074, 2377, 2536
Hpy166II GTNNAC 6 cut(s) 38, 395, 665, 1973, 2483, 2667
Hpy8I GTNNAC 6 cut(s) 38, 395, 665, 1973, 2483, 2667
HpyCH4III ACNGT 6 cut(s) 159, 468, 947, 1402, 2267, 2317
HpyCH4IV ACGT 2 cut(s) 607, 894
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 578, 655, 745, 809
HpySE526I ACGT 2 cut(s) 607, 894
Hsp92I GRCGYC 1 cut(s) 2515
Hsp92II CATG 9 cut(s) 137, 335, 341, 966, 1263, 1444, 1722, 2221, 2646
HspAI GCGC 1 cut(s) 2515
KasI GGCGCC 1 cut(s) 2514
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 4 cut(s) 475, 2332, 2406, 2419
LguI GCTCTTC 1 cut(s) 1530
LmnI GCTCC 4 cut(s) 73, 1444, 2065, 2469
Lsp1109I GCAGC 2 cut(s) 34, 1560
LweI GCATC 7 cut(s) 469, 790, 829, 982, 1640, 1874, 2451
MaeI CTAG 7 cut(s) 84, 851, 1089, 2013, 2123, 2136, 2288
MaeII ACGT 2 cut(s) 607, 894
MaeIII GTNAC 2 cut(s) 784, 1623
MalI GATC 4 cut(s) 477, 2334, 2408, 2421
MboI GATC 4 cut(s) 475, 2332, 2406, 2419
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 3 cut(s) 2332, 2406, 2419
MhlI GDGCHC 4 cut(s) 264, 927, 1945, 2070
MlsI TGGCCA 1 cut(s) 1047
MluNI TGGCCA 1 cut(s) 1047
Mly113I GGCGCC 1 cut(s) 2515
MlyI GAGTC 4 cut(s) 217, 1724, 1991, 2743
MmeI TCCRAC 5 cut(s) 366, 706, 734, 983, 2187
Mox20I TGGCCA 1 cut(s) 1047
Mph1103I ATGCAT 2 cut(s) 135, 2644
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 8 cut(s) 918, 1376, 1509, 1517, 1800, 2052, 2252, 2322
MslI CAYNNNNRTG 3 cut(s) 336, 1549, 2637
Msp20I TGGCCA 1 cut(s) 1047
MspI CCGG 2 cut(s) 437, 2063
MspR9I CCNGG 3 cut(s) 1939, 2003, 2524
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 2 cut(s) 281, 651
MvaI CCWGG 3 cut(s) 1939, 2003, 2524
MvnI CGCG 1 cut(s) 1371
MwoI GCNNNNNNNGC 5 cut(s) 161, 578, 655, 745, 809
NarI GGCGCC 1 cut(s) 2515
NcoI CCATGG 1 cut(s) 1440
NdeI CATATG 2 cut(s) 625, 1752
NdeII GATC 4 cut(s) 475, 2332, 2406, 2419
NlaIII CATG 9 cut(s) 137, 335, 341, 966, 1263, 1444, 1722, 2221, 2646
NlaIV GGNNCC 3 cut(s) 470, 1107, 2516
NmuCI GTSAC 2 cut(s) 784, 1623
NruI TCGCGA 1 cut(s) 1371
NsiI ATGCAT 2 cut(s) 135, 2644
NspI RCATGY 2 cut(s) 1263, 2646
PagI TCATGA 1 cut(s) 337
PasI CCCWGGG 1 cut(s) 1938
PciSI GCTCTTC 1 cut(s) 1530
PctI GAATGC 2 cut(s) 281, 651
PfeI GAWTC 7 cut(s) 440, 509, 878, 967, 1029, 1366, 1795
PflMI CCANNNNNTGG 1 cut(s) 1043
PfoI TCCNGGA 2 cut(s) 2001, 2522
PkrI GCNGC 2 cut(s) 24, 1575
PleI GAGTC 4 cut(s) 217, 1723, 1990, 2743
PluTI GGCGCC 1 cut(s) 2518
PpsI GAGTC 4 cut(s) 217, 1723, 1990, 2743
PpuMI RGGWCCY 1 cut(s) 1106
PsiI TTATAA 3 cut(s) 942, 1076, 1359
Psp124BI GAGCTC 1 cut(s) 927
Psp5II RGGWCCY 1 cut(s) 1106
Psp6I CCWGG 3 cut(s) 1937, 2001, 2522
PspGI CCWGG 3 cut(s) 1937, 2001, 2522
PspN4I GGNNCC 3 cut(s) 470, 1107, 2516
PspPI GGNCC 4 cut(s) 162, 737, 1106, 2530
PspPPI RGGWCCY 1 cut(s) 1106
PstI CTGCAG 1 cut(s) 537
PsuI RGATCY 3 cut(s) 2332, 2406, 2419
RruI TCGCGA 1 cut(s) 1371
RsaI GTAC 5 cut(s) 402, 470, 2319, 2666, 2715
RsaNI GTAC 5 cut(s) 401, 469, 2318, 2665, 2714
RseI CAYNNNNRTG 3 cut(s) 336, 1549, 2637
SacI GAGCTC 1 cut(s) 927
SapI GCTCTTC 1 cut(s) 1530
SaqAI TTAA 8 cut(s) 918, 1376, 1509, 1517, 1800, 2052, 2252, 2322
SatI GCNGC 2 cut(s) 23, 1574
Sau3AI GATC 4 cut(s) 475, 2332, 2406, 2419
Sau96I GGNCC 4 cut(s) 162, 737, 1106, 2530
ScaI AGTACT 2 cut(s) 402, 2319
SchI GAGTC 4 cut(s) 217, 1724, 1991, 2743
ScrFI CCNGG 3 cut(s) 1939, 2003, 2524
SduI GDGCHC 4 cut(s) 264, 927, 1945, 2070
SfaNI GCATC 7 cut(s) 469, 790, 829, 982, 1640, 1874, 2451
SfcI CTRYAG 1 cut(s) 533
SfoI GGCGCC 1 cut(s) 2516
SinI GGWCC 1 cut(s) 1106
SmiMI CAYNNNNRTG 3 cut(s) 336, 1549, 2637
SmlI CTYRAG 3 cut(s) 1160, 1874, 2561
SmoI CTYRAG 3 cut(s) 1160, 1874, 2561
SpeI ACTAGT 1 cut(s) 2012
SspDI GGCGCC 1 cut(s) 2514
SspI AATATT 1 cut(s) 1294
SspMI CTAG 7 cut(s) 84, 851, 1089, 2013, 2123, 2136, 2288
SstI GAGCTC 1 cut(s) 927
StyD4I CCNGG 3 cut(s) 1937, 2001, 2522
StyI CCWWGG 2 cut(s) 1199, 1440
TaaI ACNGT 6 cut(s) 159, 468, 947, 1402, 2267, 2317
TaiI ACGT 2 cut(s) 610, 897
TaqI TCGA 3 cut(s) 104, 562, 1027
TatI WGTACW 2 cut(s) 400, 2317
TfiI GAWTC 7 cut(s) 440, 509, 878, 967, 1029, 1366, 1795
Tru1I TTAA 8 cut(s) 918, 1376, 1509, 1517, 1800, 2052, 2252, 2322
Tru9I TTAA 8 cut(s) 918, 1376, 1509, 1517, 1800, 2052, 2252, 2322
TscAI CASTG 4 cut(s) 871, 1407, 2117, 2748
TseFI GTSAC 2 cut(s) 784, 1623
TseI GCWGC 2 cut(s) 22, 1573
Tsp45I GTSAC 2 cut(s) 784, 1623
TspDTI ATGAA 3 cut(s) 624, 1286, 1868
TspRI CASTG 4 cut(s) 871, 1407, 2117, 2748
Van91I CCANNNNNTGG 1 cut(s) 1043
VpaK11BI GGWCC 1 cut(s) 1106
XagI CCTNNNNNAGG 1 cut(s) 2139
XapI RAATTY 5 cut(s) 269, 592, 953, 1484, 1513
XbaI TCTAGA 1 cut(s) 2287
XceI RCATGY 2 cut(s) 1263, 2646
XcmI CCANNNNNNNNNTGG 1 cut(s) 2358
XmiI GTMKAC 2 cut(s) 37, 2482
XspI CTAG 7 cut(s) 84, 851, 1089, 2013, 2123, 2136, 2288
ZrmI AGTACT 2 cut(s) 402, 2319
Zsp2I ATGCAT 2 cut(s) 135, 2644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.