RchiOBHm_Chr6g0250511

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000105
Physical Location & Seq
Forward (+)
5996955 .. 6007241
10287 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22456

Sequence Viewer

Length: 1449 bp
ATGGAGTCTCTTAAAACTCTTATTCTTTCTGGGTGTTCCAATATCAAGAAGATTCCTGAGTTTAGCAGAAATATGGAGTGTTTGTCAGAGCTGTGTCTTGATAGGACTGCCATTGAAAAACTGCCCGACTCAATCCAGTACCTATGTGGCCTGTCTTTCTTGGATCTAAGCAACTGCAAGAATCTTTTTTGTCTCCCAAGCACCATTAATAGATTGACAAGATGCCAGAAGCTCGGGGGACCGGATAAAAGTGTGCGGGAGTTGGATTTTTTGCCGGCAAATGTTGCAAGTATAACTCCTGTAACAGAATTACCATCATCGGTCTTCAGCATTTCAGATCATGTTAAAGATTCAAGTTCTCATGGATATGAAGTCATTCAAGAATCATTGTTCGAGTTTTTGCCTTCTGGATTGATGCAAATGGCGTATGAAGAGCCAACGAGTTTCCGGTTGTCTTTATCTGGTCTGGGTAATTTAACAGATCTGAACATAAGTGACTGCAATCTTGATGACAGAGCATTTGTCAACAACTTTGGCTGGTTGCCCTGTTTAGTGGCATTAAATCTGAGTGGAAATGATTTTATTAAGCTTCCTCCAACCATCAGATGGCTTAATAAGCTTGAGAACGTTAACTTGGAGAACTGCAAAAGACTTGAAGACTTGTCAAATCTTCCATCAAATAGTAAGTTGGATGTAAGAGCTGATGGTTGCTCTTCATTGAGAATTTTGTTTGACATATCCAATTACAACAGACTGGAGGAATCATATTTCAGTTTCATCAACTGCTTTAAGCTAAATGAAGACCGAGGCCGCAGTAATATAGCATTTGAAATGCTGAAGATAGTCCTTCATCAGGCTATCTCCACCACAAAGGAAACATTTCAAATTGTATTTCCTGGAAGTGAAATTCCTCGGTGGTTCAAACATCAAAGCCGTAAGGATTCATTGGGTGTATGCATACTACCTCCACGTCCATATTCCAGTAGGTTTATGGGATTTGCCTTGTGTGCTGTTTTTGTACTCAATGATGAGCGCCATCAGGTTGATGAACTTGAGATCCATCACTTCAAGACTTTTAAAGCTACGCATAATCTAGTCTGTTACCTGAAACTCAATGGAAAAGAATTAGAAGTATGTGGCAGGCAGCCGGCCTTTCGGTTTAGTGAAGAATTTTGCCAGGTTGAGTCTGATCACCGTTGGGTATTCTATGTATCCTCGGATAAATACTTTGGTATTGAAGAGCATGACAGATGCTCTCAGATTGAACTGTTATTTGAAGCCAGAGGGCCAGGTTTGAAGGTGAAGGTGTGCGGGCTCCGTTTGATATTTGAACAAGATGTGCACGAGTTGATGAAGGGATGTAGACACACACAAGCTTACGGACGGCACGGATACGTACGGAGATATGAATGTGATTGTTGGGTGGATGGCTATTTATATTCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

482

Amino Acids

55.27

Weight (kDa)

5.95

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 298 - 447 1.5e-16 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 606
AccI GTMKAC 1 cut(s) 1363
AciI CCGC 3 cut(s) 256, 811, 1311
AclI AACGTT 1 cut(s) 627
AclWI GGATC 2 cut(s) 171, 1051
AcsI RAATTY 3 cut(s) 723, 906, 1169
AcuI CTGAAG 2 cut(s) 310, 857
AfaI GTAC 3 cut(s) 140, 1020, 1398
AfiI CCNNNNNNNGG 2 cut(s) 606, 853
AjiI CACGTC 1 cut(s) 971
AjnI CCWGG 3 cut(s) 895, 1176, 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AloI GAACNNNNNNTCC 2 cut(s) 1041, 1073
AluBI AGCT 8 cut(s) 91, 232, 589, 619, 701, 793, 1082, 1376
AluI AGCT 8 cut(s) 91, 232, 589, 619, 701, 793, 1082, 1376
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 2 cut(s) 12, 197
Alw44I GTGCAC 1 cut(s) 1340
AlwI GGATC 2 cut(s) 171, 1051
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 4 cut(s) 148, 808, 1149, 1286
ApaLI GTGCAC 1 cut(s) 1340
ApeKI GCWGC 1 cut(s) 1144
ApoI RAATTY 3 cut(s) 723, 906, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 375, 879
AspLEI GCGC 1 cut(s) 1035
AspS9I GGNCC 2 cut(s) 239, 1286
AsuHPI GGTGA 2 cut(s) 1184, 1312
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 1344
BanII GRGCYC 1 cut(s) 1317
BauI CACGAG 1 cut(s) 1343
BbsI GAAGAC 3 cut(s) 316, 663, 807
Bbv12I GWGCWC 1 cut(s) 1344
BbvI GCAGC 1 cut(s) 1156
BccI CCATC 8 cut(s) 322, 600, 608, 682, 698, 1044, 1068, 1421
BceAI ACGGC 2 cut(s) 918, 1400
BciT130I CCWGG 3 cut(s) 897, 1178, 1290
BciVI GTATCC 2 cut(s) 1222, 1385
BclI TGATCA 1 cut(s) 1189
BcoDI GTCTC 2 cut(s) 12, 197
BfaI CTAG 1 cut(s) 1094
BfoI RGCGCY 1 cut(s) 1036
BfuI GTATCC 2 cut(s) 1222, 1385
BglII AGATCT 1 cut(s) 481
BisI GCNGC 2 cut(s) 811, 1145
BlsI GCNGC 2 cut(s) 812, 1146
Bme1390I CCNGG 3 cut(s) 897, 1178, 1290
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 2 cut(s) 239, 1286
BmiI GGNNCC 2 cut(s) 240, 1316
BmrFI CCNGG 3 cut(s) 897, 1178, 1290
BmsI GCATC 3 cut(s) 212, 405, 1241
BpiI GAAGAC 3 cut(s) 316, 663, 807
BpmI CTGGAG 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 641, 1073
BsaAI YACGTR 1 cut(s) 1396
BsaJI CCNNGG 3 cut(s) 805, 911, 1215
BsaWI WCCGGW 2 cut(s) 241, 447
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 853
Bse118I RCCGGY 2 cut(s) 274, 1147
Bse1I ACTGG 3 cut(s) 136, 759, 981
BseBI CCWGG 3 cut(s) 897, 1178, 1290
BseDI CCNNGG 3 cut(s) 805, 911, 1215
BseGI GGATG 3 cut(s) 697, 1364, 1432
BseLI CCNNNNNNNGG 2 cut(s) 606, 853
BseMII CTCAG 3 cut(s) 48, 557, 1271
BseNI ACTGG 3 cut(s) 136, 759, 981
BseSI GKGCMC 1 cut(s) 1344
BseXI GCAGC 1 cut(s) 1156
BshFI GGCC 4 cut(s) 150, 810, 1151, 1288
BsiHKAI GWGCWC 1 cut(s) 1344
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 4 cut(s) 242, 275, 448, 1148
BsiWI CGTACG 1 cut(s) 1396
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 606, 853
BsmAI GTCTC 2 cut(s) 12, 197
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 4 cut(s) 150, 810, 1151, 1288
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 1317, 1344
Bsp143I GATC 5 cut(s) 163, 337, 481, 1056, 1189
BspACI CCGC 3 cut(s) 256, 811, 1311
BspANI GGCC 4 cut(s) 150, 810, 1151, 1288
BspCNI CTCAG 3 cut(s) 49, 558, 1270
BspLI GGNNCC 2 cut(s) 240, 1316
BspPI GGATC 2 cut(s) 171, 1051
BspQI GCTCTTC 3 cut(s) 426, 718, 1233
BsrFI RCCGGY 2 cut(s) 274, 1147
BsrI ACTGG 3 cut(s) 136, 759, 981
BssAI RCCGGY 2 cut(s) 274, 1147
BssECI CCNNGG 3 cut(s) 805, 911, 1215
BssMI GATC 5 cut(s) 163, 337, 481, 1056, 1189
BssSI CACGAG 1 cut(s) 1343
Bst2BI CACGAG 1 cut(s) 1343
Bst2UI CCWGG 3 cut(s) 897, 1178, 1290
Bst4CI ACNGT 2 cut(s) 1196, 1269
Bst6I CTCTTC 3 cut(s) 426, 718, 1233
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 1396
BstC8I GCNNGC 4 cut(s) 276, 1142, 1149, 1313
BstDEI CTNAG 4 cut(s) 57, 167, 566, 1257
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 3 cut(s) 697, 1364, 1432
BstH2I RGCGCY 1 cut(s) 1036
BstHHI GCGC 1 cut(s) 1035
BstKTI GATC 5 cut(s) 166, 340, 484, 1059, 1192
BstMAI GTCTC 2 cut(s) 12, 197
BstMBI GATC 5 cut(s) 163, 337, 481, 1056, 1189
BstMWI GCNNNNNNNGC 3 cut(s) 284, 616, 1007
BstNI CCWGG 3 cut(s) 897, 1178, 1290
BstSCI CCNGG 3 cut(s) 895, 1176, 1288
BstSLI GKGCMC 1 cut(s) 1344
BstSNI TACGTA 1 cut(s) 1396
BstV1I GCAGC 1 cut(s) 1156
BstV2I GAAGAC 3 cut(s) 316, 663, 807
BstX2I RGATCY 3 cut(s) 163, 481, 1056
BstYI RGATCY 3 cut(s) 163, 481, 1056
BsuI GTATCC 2 cut(s) 1222, 1385
BsuRI GGCC 4 cut(s) 150, 810, 1151, 1288
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 3 cut(s) 697, 1364, 1432
Cac8I GCNNGC 4 cut(s) 276, 1142, 1149, 1313
CfoI GCGC 1 cut(s) 1035
Cfr10I RCCGGY 2 cut(s) 274, 1147
Cfr13I GGNCC 2 cut(s) 239, 1286
Csp6I GTAC 3 cut(s) 139, 1019, 1397
CviAII CATG 3 cut(s) 341, 362, 1244
CviQI GTAC 3 cut(s) 139, 1019, 1397
DdeI CTNAG 4 cut(s) 57, 167, 566, 1257
DpnI GATC 5 cut(s) 165, 339, 483, 1058, 1191
DpnII GATC 5 cut(s) 163, 337, 481, 1056, 1189
DraI TTTAAA 1 cut(s) 1078
Eam1104I CTCTTC 3 cut(s) 426, 718, 1233
EarI CTCTTC 3 cut(s) 426, 718, 1233
Eco105I TACGTA 1 cut(s) 1396
Eco24I GRGCYC 1 cut(s) 1317
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 310, 857
Eco88I CYCGRG 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoRII CCWGG 3 cut(s) 895, 1176, 1288
EcoT22I ATGCAT 1 cut(s) 959
EcoT38I GRGCYC 1 cut(s) 1317
FaeI CATG 3 cut(s) 344, 365, 1247
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 340, 361, 1243
FauI CCCGC 2 cut(s) 249, 1304
FbaI TGATCA 1 cut(s) 1189
FblI GTMKAC 1 cut(s) 1363
Fnu4HI GCNGC 2 cut(s) 811, 1145
FokI GGATG 3 cut(s) 704, 1371, 1439
FriOI GRGCYC 1 cut(s) 1317
Fsp4HI GCNGC 2 cut(s) 811, 1145
FspBI CTAG 1 cut(s) 1094
GlaI GCGC 1 cut(s) 1034
GluI GCNGC 2 cut(s) 811, 1145
GsuI CTGGAG 1 cut(s) 776
HaeII RGCGCY 1 cut(s) 1036
HaeIII GGCC 4 cut(s) 150, 810, 1151, 1288
HapII CCGG 4 cut(s) 242, 275, 448, 1148
HhaI GCGC 1 cut(s) 1035
Hin1II CATG 3 cut(s) 344, 365, 1247
Hin6I GCGC 1 cut(s) 1033
HinP1I GCGC 1 cut(s) 1033
HincII GTYRAC 2 cut(s) 526, 631
HindII GTYRAC 2 cut(s) 526, 631
HindIII AAGCTT 3 cut(s) 587, 617, 1374
HinfI GANTC 9 cut(s) 5, 52, 128, 181, 350, 383, 761, 941, 1184
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 4 cut(s) 242, 275, 448, 1148
HphI GGTGA 2 cut(s) 1184, 1312
Hpy166II GTNNAC 4 cut(s) 526, 631, 1342, 1364
Hpy188I TCNGA 8 cut(s) 88, 337, 486, 567, 605, 1189, 1219, 1260
Hpy188III TCNNGA 7 cut(s) 46, 56, 98, 380, 408, 506, 1069
Hpy8I GTNNAC 4 cut(s) 526, 631, 1342, 1364
HpyAV CCTTC 5 cut(s) 414, 857, 1291, 1297, 1348
HpyCH4III ACNGT 2 cut(s) 1196, 1269
HpyCH4IV ACGT 3 cut(s) 627, 970, 1395
HpyCH4V TGCA 7 cut(s) 177, 287, 418, 501, 645, 957, 1342
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 616, 1007
HpyF3I CTNAG 4 cut(s) 57, 167, 566, 1257
HpySE526I ACGT 3 cut(s) 627, 970, 1395
Hsp92II CATG 3 cut(s) 344, 365, 1247
HspAI GCGC 1 cut(s) 1033
KroI GCCGGC 2 cut(s) 274, 1147
KroNI GCCGGC 2 cut(s) 276, 1149
Ksp22I TGATCA 1 cut(s) 1189
KspAI GTTAAC 1 cut(s) 631
Kzo9I GATC 5 cut(s) 163, 337, 481, 1056, 1189
LguI GCTCTTC 3 cut(s) 426, 718, 1233
LmnI GCTCC 1 cut(s) 1320
Lsp1109I GCAGC 1 cut(s) 1156
LweI GCATC 3 cut(s) 212, 405, 1241
MaeI CTAG 1 cut(s) 1094
MaeII ACGT 3 cut(s) 627, 970, 1395
MaeIII GTNAC 3 cut(s) 301, 494, 1100
MalI GATC 5 cut(s) 165, 339, 483, 1058, 1191
MboI GATC 5 cut(s) 163, 337, 481, 1056, 1189
MflI RGATCY 3 cut(s) 163, 481, 1056
MhlI GDGCHC 2 cut(s) 1317, 1344
MluCI AATT 8 cut(s) 308, 472, 723, 742, 885, 906, 1124, 1169
MlyI GAGTC 3 cut(s) 14, 122, 1193
MmeI TCCRAC 3 cut(s) 243, 620, 669
MnlI CCTC 7 cut(s) 603, 751, 800, 921, 975, 1225, 1277
Mph1103I ATGCAT 1 cut(s) 959
MroNI GCCGGC 2 cut(s) 274, 1147
MroXI GAANNNNTTC 2 cut(s) 375, 879
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 4 cut(s) 242, 275, 448, 1148
MspR9I CCNGG 3 cut(s) 897, 1178, 1290
MvaI CCWGG 3 cut(s) 897, 1178, 1290
MwoI GCNNNNNNNGC 3 cut(s) 284, 616, 1007
NaeI GCCGGC 2 cut(s) 276, 1149
NdeII GATC 5 cut(s) 163, 337, 481, 1056, 1189
NgoMIV GCCGGC 2 cut(s) 274, 1147
NlaIII CATG 3 cut(s) 344, 365, 1247
NlaIV GGNNCC 2 cut(s) 240, 1316
NmuCI GTSAC 1 cut(s) 494
NsiI ATGCAT 1 cut(s) 959
PciSI GCTCTTC 3 cut(s) 426, 718, 1233
PdiI GCCGGC 2 cut(s) 276, 1149
PdmI GAANNNNTTC 2 cut(s) 375, 879
PfeI GAWTC 6 cut(s) 52, 181, 350, 383, 761, 941
Pfl23II CGTACG 1 cut(s) 1396
PflMI CCANNNNNTGG 1 cut(s) 606
PfoI TCCNGGA 1 cut(s) 895
PkrI GCNGC 2 cut(s) 812, 1146
PleI GAGTC 3 cut(s) 13, 122, 1192
PpsI GAGTC 3 cut(s) 13, 122, 1192
Ppu21I YACGTR 1 cut(s) 1396
PshBI ATTAAT 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 895, 1176, 1288
PspGI CCWGG 3 cut(s) 895, 1176, 1288
PspLI CGTACG 1 cut(s) 1396
PspN4I GGNNCC 2 cut(s) 240, 1316
PspPI GGNCC 2 cut(s) 239, 1286
PsuI RGATCY 3 cut(s) 163, 481, 1056
RsaI GTAC 3 cut(s) 140, 1020, 1398
RsaNI GTAC 3 cut(s) 139, 1019, 1397
RseI CAYNNNNRTG 1 cut(s) 366
SapI GCTCTTC 3 cut(s) 426, 718, 1233
SatI GCNGC 2 cut(s) 811, 1145
Sau3AI GATC 5 cut(s) 163, 337, 481, 1056, 1189
Sau96I GGNCC 2 cut(s) 239, 1286
SchI GAGTC 3 cut(s) 14, 122, 1193
ScrFI CCNGG 3 cut(s) 897, 1178, 1290
SduI GDGCHC 2 cut(s) 1317, 1344
SfaNI GCATC 3 cut(s) 212, 405, 1241
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 620, 1052
SmoI CTYRAG 2 cut(s) 620, 1052
SnaBI TACGTA 1 cut(s) 1396
Sse9I AATT 8 cut(s) 308, 472, 723, 742, 885, 906, 1124, 1169
SsiI CCGC 3 cut(s) 256, 811, 1311
SspMI CTAG 1 cut(s) 1094
StyD4I CCNGG 3 cut(s) 895, 1176, 1288
TaaI ACNGT 2 cut(s) 1196, 1269
TaiI ACGT 3 cut(s) 630, 973, 1398
TaqI TCGA 1 cut(s) 393
TaqII GACCGA 2 cut(s) 310, 819
TasI AATT 8 cut(s) 308, 472, 723, 742, 885, 906, 1124, 1169
TatI WGTACW 1 cut(s) 1018
TauI GCSGC 1 cut(s) 813
TfiI GAWTC 6 cut(s) 52, 181, 350, 383, 761, 941
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 1 cut(s) 1144
Tsp45I GTSAC 1 cut(s) 494
TspGWI ACGGA 4 cut(s) 1307, 1395, 1404, 1414
Van91I CCANNNNNTGG 1 cut(s) 606
VneI GTGCAC 1 cut(s) 1340
VpaK11BI GGWCC 1 cut(s) 239
VspI ATTAAT 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 3 cut(s) 723, 906, 1169
XcmI CCANNNNNNNNNTGG 3 cut(s) 143, 603, 988
XmiI GTMKAC 1 cut(s) 1363
XmnI GAANNNNTTC 2 cut(s) 375, 879
XspI CTAG 1 cut(s) 1094
Zsp2I ATGCAT 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.