Rh6DG004700

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
532025 .. 532465
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG004700.1

Sequence Viewer

Length: 441 bp
ATGGCCACTCATCATCTTGTATGTTGCCTGAAGCTGAATGGAAGAGAACTAGAAGTATACGGCAAACAGCCTGCATTTCGCTTTAGTGAACAATTTTGCCAGGTTGAGTCAGATCACCTTTGGATATTCTATGTGTCTCGTGATAAATACTTTGGTACAGATTGGTGGCATAACAGTTGCAGTCAGCTTGAGTTCTTATTTGAAACAAGAGGGCCAGGCCTGAGGGTGAAGGAGTGTGGGGTACGTCTGATATATGAGCAAGATGTGCTAGAGTTGAACCAAACAATAACTCAATCAAGCAGTAGGGTGTCTCCTCCATATGAGGATATATTGACTGATTTTGAGAATCAAGTTGAAGGGGAAACCATTCACCCAAAAAAAAAGTTGAAAGGGGAAACCAGTGGTACTGGTAGTAGAACCTGCACCCTTGAAGAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.94

Weight (kDa)

5.37

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 157, 243, 406
AgsI TTSAA 5 cut(s) 203, 277, 356, 388, 431
AjnI CCWGG 2 cut(s) 99, 214
AluBI AGCT 2 cut(s) 34, 187
AluI AGCT 2 cut(s) 34, 187
Alw26I GTCTC 2 cut(s) 141, 315
AoxI GGCC 3 cut(s) 3, 212, 217
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 107, 238, 362
AxyI CCTNAGG 1 cut(s) 221
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 138
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 2 cut(s) 101, 216
BcoDI GTCTC 2 cut(s) 141, 315
BfaI CTAG 2 cut(s) 50, 269
BfmI CTRYAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 428
Bme1390I CCNGG 2 cut(s) 101, 216
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 2 cut(s) 101, 216
BpuEI CTTGAG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 399, 412
Bse21I CCTNAGG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 101, 216
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 399, 412
BseRI GAGGAG 1 cut(s) 303
BsgI GTGCAG 1 cut(s) 406
BshFI GGCC 3 cut(s) 5, 214, 219
BsmAI GTCTC 2 cut(s) 141, 315
BsnI GGCC 3 cut(s) 5, 214, 219
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 3 cut(s) 5, 214, 219
BspCNI CTCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 428
BsrI ACTGG 2 cut(s) 399, 412
BssMI GATC 1 cut(s) 112
BssNAI GTATAC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 101, 216
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 221
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 141, 315
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 2 cut(s) 101, 216
BstSCI CCNGG 2 cut(s) 99, 214
BstSFI CTRYAG 1 cut(s) 437
BstZ17I GTATAC 1 cut(s) 58
Bsu36I CCTNAGG 1 cut(s) 221
BsuRI GGCC 3 cut(s) 5, 214, 219
BtsIMutI CAGTG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 156, 242, 405
CviJI RGCY 6 cut(s) 5, 34, 70, 187, 214, 219
CviKI_1 RGCY 6 cut(s) 5, 34, 70, 187, 214, 219
CviQI GTAC 3 cut(s) 156, 242, 405
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 99, 214
FauNDI CATATG 1 cut(s) 319
FblI GTMKAC 1 cut(s) 57
FspBI CTAG 2 cut(s) 50, 269
HaeIII GGCC 3 cut(s) 5, 214, 219
HinfI GANTC 2 cut(s) 107, 346
HphI GGTGA 3 cut(s) 107, 238, 362
Hpy166II GTNNAC 2 cut(s) 58, 89
Hpy188I TCNGA 2 cut(s) 112, 249
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 58, 89
HpyAV CCTTC 2 cut(s) 223, 350
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 74, 180, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 244
Kzo9I GATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 50, 269
MaeII ACGT 1 cut(s) 244
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 4 cut(s) 203, 216, 316, 324
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 101, 216
MvaI CCWGG 2 cut(s) 101, 216
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeI CATATG 1 cut(s) 319
NdeII GATC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 346
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 99, 214
PspGI CCWGG 2 cut(s) 99, 214
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 3 cut(s) 157, 243, 406
RsaNI GTAC 3 cut(s) 156, 242, 405
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 101, 216
SetI ASST 6 cut(s) 36, 105, 120, 189, 247, 422
SfcI CTRYAG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 219
SspMI CTAG 2 cut(s) 50, 269
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 99, 214
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 247
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 346
TscAI CASTG 1 cut(s) 406
TspRI CASTG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 2 cut(s) 50, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.