RchiOBHm_Chr6g0247321

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000105
Physical Location & Seq
Forward (+)
3178904 .. 3180866
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22170

Sequence Viewer

Length: 1563 bp
ATGTGTCCCAAACACTCTTCCACCCACGCGCCGCAGCTCCACACGCGCTCGCTCGACCTGTCGGACGTGATCAGCTTCCGGGTCGAAGGAAATAACGGCGAGTTCGAACGGATTTGCGCCGAGCTGGGCTTCTCCGGCCCAGACGACTTCGCTATACCCGAGGCGGCCTGGGAGTCCCGGAGGATCCGGTCCGGAAGGCCGGATACGCGATGGACGTACGATGTGTTTCTAAGTTTCAGAGGGCCAGATACGTGCAAGGGGATTACCTCCGAGCTGTATGATAGACTACAATGGAGAGGAATTAAAACCTTTATGGATGACCCCAATCTTCGTGTAGGAGATTCCATTAGCCCGTCTCTTGTTTCAGCAATTGAGGAGTCAAGATTTGCCATTGTCATTCTTTCACCCAACTATGCTTCTTCGCCATGGTGCTTGGATGAACTCGTCACGATTATTCAATGCATGAAAGAGAAGTGGCTTCGAGTCATGCCCGTCTTCTACAAAGTGGAGTCTTCTGATGTGCGGCACCAAAGGGGAAGTTTTGAGCTTAAAGGGAAAACCCGACCCCGAGTAGAAGTAAGGGAACATGAAGAATTTTATGGCAAGAATGAGGACAAATTCAAGGCGTGGAGAGCTGCGTTGACAGAGGTAGCCAATCTTTCTGGGTGGGATTCAAAGAATTTTAGAACTGAGAGAGAACTTGTTGAGGCAATTGTTGGGGATATTGGGAGGAAGGTGGTGTATAAATCTTCAAGTGTTGACAAGGGCTTCGTAGGAATGGATGTCCGTGTTGATGATTTATTACATCATTACATACATCAAGAGTCGGATAAGGTACGAATTATAGGGATACATGGGATGCGAGGAGTTGGTAAGACAGCGCTTGCTCGAGCTTTTTATGATGACTTTGGTCAGGATTTTGAGAATAGATGCTTTCTTTTCAATGTTAGAGAAAGGTTTAAAAGGGATGGCCTAGTTTCTTTACAAAAGAACCTTCTTTCCAGCATTTTGACGGACAAAATTGAATACATAGAGGATGAATATACAGGAGTTGATGTGATTCAAAGAAGTTTATGTAAAATAAAGGTGCTTGTTGTTATTGATGATGTGGATCGGTTGGAACAATTAGAAAAATTGGCTGGAAGTCATGACTGGTTTGGTCCAGGGAGCAGAATTATCATAACCACCACAAATATTCACTTGTTAGAGGCACATGATGTTGATGCTCTATACAAGGCTACCGGGTTAAATTCTGGTGAAGCTCTTCAACTCTTGAGTTTAAAGGCTTTCAAGAAAAGCCTCCCACCAGAAGATTATTTGGACCTGTGCGACCGTATTTTAGGGTATGCTCAGGGGCTGCCGCTAGCTCTTGTGGTTTTAGGTTCTTTTTTATGTGGTAGAAAGCACAATGAATGGGCAAGTGCAATTGATAGGCTAAAAAATACACCAAATAGAGGAATTATGGATGTGCTTCAGATTAGTTTTGATGGACTAGAGGACATAGAGAAAGAAATATTCCTACATTTGCTTGTTTTTACAAGGGGAAAGATAGGGATCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

520

Amino Acids

59.23

Weight (kDa)

5.94

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 73 - 252 2.5e-49 TIR domain
TIR_2 PF13676 75 - 171 1.4e-16 TIR domain
NB-ARC PF00931 275 - 433 1.6e-15 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 525
AccII CGCG 3 cut(s) 29, 46, 208
AccIII TCCGGA 1 cut(s) 191
AciI CCGC 4 cut(s) 32, 164, 523, 1361
AclWI GGATC 4 cut(s) 178, 191, 1119, 1562
AcsI RAATTY 4 cut(s) 593, 617, 679, 1249
AcuI CTGAAG 1 cut(s) 1457
AfaI GTAC 2 cut(s) 218, 837
AfeI AGCGCT 1 cut(s) 882
AfiI CCNNNNNNNGG 1 cut(s) 1454
AgsI TTSAA 9 cut(s) 458, 622, 675, 753, 943, 1025, 1064, 1268, 1291
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 2 cut(s) 167, 1162
AloI GAACNNNNNNTCC 2 cut(s) 983, 1015
AluBI AGCT 9 cut(s) 37, 75, 124, 274, 547, 635, 893, 1262, 1367
AluI AGCT 9 cut(s) 37, 75, 124, 274, 547, 635, 893, 1262, 1367
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 4 cut(s) 178, 191, 1119, 1562
AlwNI CAGNNNCTG 1 cut(s) 1357
Ama87I CYCGRG 3 cut(s) 158, 567, 888
Aor13HI TCCGGA 1 cut(s) 191
Aor51HI AGCGCT 1 cut(s) 882
AoxI GGCC 5 cut(s) 136, 165, 197, 242, 970
ApeKI GCWGC 3 cut(s) 34, 635, 1357
ApoI RAATTY 4 cut(s) 593, 617, 679, 1249
ArsI GACNNNNNNTTYG 2 cut(s) 752, 784
Asp700I GAANNNNTTC 1 cut(s) 1263
AspLEI GCGC 4 cut(s) 31, 48, 119, 883
AspS9I GGNCC 5 cut(s) 137, 189, 242, 1160, 1321
AsuC2I CCSGG 3 cut(s) 80, 178, 1243
AsuHPI GGTGA 2 cut(s) 396, 1268
AsuII TTCGAA 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 1363
AvaI CYCGRG 3 cut(s) 158, 567, 888
AvaII GGWCC 3 cut(s) 189, 1160, 1321
BamHI GGATCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 525
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BbsI GAAGAC 2 cut(s) 487, 504
BbvI GCAGC 3 cut(s) 46, 622, 1344
BccI CCATC 3 cut(s) 204, 962, 1481
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 169, 1164
BciVI GTATCC 2 cut(s) 196, 843
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 3 cut(s) 80, 178, 1243
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 3 cut(s) 974, 1364, 1493
BfoI RGCGCY 1 cut(s) 884
BfuI GTATCC 2 cut(s) 196, 843
BisI GCNGC 7 cut(s) 32, 35, 165, 524, 636, 1358, 1361
BlsI GCNGC 7 cut(s) 33, 36, 166, 525, 637, 1359, 1362
Bme1390I CCNGG 5 cut(s) 80, 169, 178, 1164, 1243
Bme18I GGWCC 3 cut(s) 189, 1160, 1321
BmeT110I CYCGRG 3 cut(s) 158, 567, 888
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 5 cut(s) 137, 189, 242, 1160, 1321
BmiI GGNNCC 2 cut(s) 185, 527
BmrFI CCNGG 5 cut(s) 80, 169, 178, 1164, 1243
BmsI GCATC 3 cut(s) 849, 920, 1213
BmtI GCTAGC 1 cut(s) 1367
BoxI GACNNNNGTC 1 cut(s) 909
BpiI GAAGAC 2 cut(s) 487, 504
Bpu10I CCTNAGC 1 cut(s) 1350
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 1294
BpuMI CCSGG 3 cut(s) 80, 178, 1243
BsaAI YACGTR 1 cut(s) 252
BsaBI GATNNNNATC 2 cut(s) 1110, 1553
BsaJI CCNNGG 4 cut(s) 159, 168, 425, 1163
BsaWI WCCGGW 2 cut(s) 186, 191
BsaXI ACNNNNNCTCC 2 cut(s) 1041, 1071
Bsc4I CCNNNNNNNGG 1 cut(s) 1454
Bse1I ACTGG 1 cut(s) 1157
Bse8I GATNNNNATC 2 cut(s) 1110, 1553
BseAI TCCGGA 1 cut(s) 191
BseBI CCWGG 2 cut(s) 169, 1164
BseDI CCNNGG 4 cut(s) 159, 168, 425, 1163
BseGI GGATG 7 cut(s) 322, 442, 787, 864, 973, 1042, 1471
BseJI GATNNNNATC 2 cut(s) 1110, 1553
BseLI CCNNNNNNNGG 1 cut(s) 1454
BseMII CTCAG 2 cut(s) 681, 1364
BseNI ACTGG 1 cut(s) 1157
BseRI GAGGAG 2 cut(s) 389, 879
BseXI GCAGC 3 cut(s) 46, 622, 1344
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 3 cut(s) 29, 46, 208
Bsh1285I CGRYCG 1 cut(s) 1333
BshFI GGCC 5 cut(s) 138, 167, 199, 244, 972
BshNI GGYRCC 1 cut(s) 525
BsiEI CGRYCG 1 cut(s) 1333
BsiHKCI CYCGRG 3 cut(s) 158, 567, 888
BsiSI CCGG 7 cut(s) 79, 135, 178, 187, 192, 200, 1242
BsiWI CGTACG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 1454
BsmAI GTCTC 1 cut(s) 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 5 cut(s) 138, 167, 199, 244, 972
BsoBI CYCGRG 3 cut(s) 158, 567, 888
Bsp119I TTCGAA 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 191
Bsp143I GATC 4 cut(s) 69, 183, 1111, 1554
Bsp19I CCATGG 1 cut(s) 425
BspACI CCGC 4 cut(s) 32, 164, 523, 1361
BspANI GGCC 5 cut(s) 138, 167, 199, 244, 972
BspCNI CTCAG 2 cut(s) 682, 1363
BspEI TCCGGA 1 cut(s) 191
BspFNI CGCG 3 cut(s) 29, 46, 208
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 2 cut(s) 185, 527
BspOI GCTAGC 1 cut(s) 1367
BspPI GGATC 4 cut(s) 178, 191, 1119, 1562
BspQI GCTCTTC 1 cut(s) 1269
BspT104I TTCGAA 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 525
BsrI ACTGG 1 cut(s) 1157
BssECI CCNNGG 4 cut(s) 159, 168, 425, 1163
BssMI GATC 4 cut(s) 69, 183, 1111, 1554
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 2 cut(s) 169, 1164
Bst4CI ACNGT 1 cut(s) 1334
Bst6I CTCTTC 2 cut(s) 22, 1269
BstBAI YACGTR 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 50, 885, 1365
BstDEI CTNAG 3 cut(s) 230, 690, 1350
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 7 cut(s) 322, 442, 787, 864, 973, 1042, 1471
BstFNI CGCG 3 cut(s) 29, 46, 208
BstH2I RGCGCY 1 cut(s) 884
BstHHI GCGC 4 cut(s) 31, 48, 119, 883
BstKTI GATC 4 cut(s) 72, 186, 1114, 1557
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 4 cut(s) 69, 183, 1111, 1554
BstMCI CGRYCG 1 cut(s) 1333
BstMWI GCNNNNNNNGC 4 cut(s) 43, 135, 205, 632
BstNI CCWGG 2 cut(s) 169, 1164
BstPAI GACNNNNGTC 1 cut(s) 909
BstSCI CCNGG 5 cut(s) 78, 167, 176, 1162, 1241
BstUI CGCG 3 cut(s) 29, 46, 208
BstV1I GCAGC 3 cut(s) 46, 622, 1344
BstV2I GAAGAC 2 cut(s) 487, 504
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuI GTATCC 2 cut(s) 196, 843
BsuRI GGCC 5 cut(s) 138, 167, 199, 244, 972
BtgI CCRYGG 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 7 cut(s) 322, 442, 787, 864, 973, 1042, 1471
Cac8I GCNNGC 3 cut(s) 50, 885, 1365
CaiI CAGNNNCTG 1 cut(s) 1357
CciI TCATGA 1 cut(s) 1147
CfoI GCGC 4 cut(s) 31, 48, 119, 883
Cfr13I GGNCC 5 cut(s) 137, 189, 242, 1160, 1321
CpoI CGGWCCG 1 cut(s) 189
Csp6I GTAC 2 cut(s) 217, 836
CspI CGGWCCG 1 cut(s) 189
CviAII CATG 7 cut(s) 426, 463, 487, 587, 854, 1148, 1214
CviQI GTAC 2 cut(s) 217, 836
DdeI CTNAG 3 cut(s) 230, 690, 1350
DpnI GATC 4 cut(s) 71, 185, 1113, 1556
DpnII GATC 4 cut(s) 69, 183, 1111, 1554
DraI TTTAAA 2 cut(s) 961, 1281
Eam1104I CTCTTC 2 cut(s) 22, 1269
EarI CTCTTC 2 cut(s) 22, 1269
Eco130I CCWWGG 1 cut(s) 425
Eco47I GGWCC 3 cut(s) 189, 1160, 1321
Eco47III AGCGCT 1 cut(s) 882
Eco57I CTGAAG 1 cut(s) 1457
Eco88I CYCGRG 3 cut(s) 158, 567, 888
EcoRII CCWGG 2 cut(s) 167, 1162
EcoT14I CCWWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 7 cut(s) 429, 466, 490, 590, 857, 1151, 1217
FaqI GGGAC 1 cut(s) 160
FatI CATG 7 cut(s) 425, 462, 486, 586, 853, 1147, 1213
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 7 cut(s) 32, 35, 165, 524, 636, 1358, 1361
FokI GGATG 7 cut(s) 329, 449, 794, 871, 980, 1049, 1478
Fsp4HI GCNGC 7 cut(s) 32, 35, 165, 524, 636, 1358, 1361
FspBI CTAG 3 cut(s) 974, 1364, 1493
GlaI GCGC 4 cut(s) 30, 47, 118, 882
GluI GCNGC 7 cut(s) 32, 35, 165, 524, 636, 1358, 1361
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 884
HaeIII GGCC 5 cut(s) 138, 167, 199, 244, 972
HapII CCGG 7 cut(s) 79, 135, 178, 187, 192, 200, 1242
HhaI GCGC 4 cut(s) 31, 48, 119, 883
Hin1II CATG 7 cut(s) 429, 466, 490, 590, 857, 1151, 1217
Hin6I GCGC 4 cut(s) 29, 46, 117, 881
HinP1I GCGC 4 cut(s) 29, 46, 117, 881
HincII GTYRAC 2 cut(s) 642, 760
HindII GTYRAC 2 cut(s) 642, 760
HinfI GANTC 8 cut(s) 173, 341, 377, 483, 509, 671, 824, 1060
HpaII CCGG 7 cut(s) 79, 135, 178, 187, 192, 200, 1242
HphI GGTGA 2 cut(s) 396, 1268
Hpy166II GTNNAC 2 cut(s) 642, 760
Hpy188I TCNGA 6 cut(s) 64, 239, 271, 517, 829, 1476
Hpy188III TCNNGA 8 cut(s) 192, 381, 448, 821, 914, 1148, 1273, 1291
Hpy8I GTNNAC 2 cut(s) 642, 760
HpyAV CCTTC 4 cut(s) 80, 189, 727, 1004
HpyCH4III ACNGT 1 cut(s) 1334
HpyCH4IV ACGT 3 cut(s) 66, 215, 251
HpyCH4V TGCA 3 cut(s) 255, 462, 1424
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 135, 205, 632
HpyF3I CTNAG 3 cut(s) 230, 690, 1350
HpySE526I ACGT 3 cut(s) 66, 215, 251
Hsp92II CATG 7 cut(s) 429, 466, 490, 590, 857, 1151, 1217
HspAI GCGC 4 cut(s) 29, 46, 117, 881
Kpn2I TCCGGA 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 183, 1111, 1554
LguI GCTCTTC 1 cut(s) 1269
LmnI GCTCC 2 cut(s) 42, 1167
Lsp1109I GCAGC 3 cut(s) 46, 622, 1344
LweI GCATC 3 cut(s) 849, 920, 1213
MaeI CTAG 3 cut(s) 974, 1364, 1493
MaeII ACGT 3 cut(s) 66, 215, 251
MaeIII GTNAC 1 cut(s) 445
MalI GATC 4 cut(s) 71, 185, 1113, 1556
MboI GATC 4 cut(s) 69, 183, 1111, 1554
MboII GAAGA 9 cut(s) 9, 320, 411, 487, 504, 602, 741, 1256, 1322
MfeI CAATTG 3 cut(s) 369, 711, 1425
MflI RGATCY 1 cut(s) 183
MlyI GAGTC 5 cut(s) 182, 386, 492, 518, 833
MmeI TCCRAC 3 cut(s) 42, 807, 1098
Mph1103I ATGCAT 1 cut(s) 464
MroI TCCGGA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 1263
MseI TTAA 5 cut(s) 303, 549, 960, 1247, 1280
MspI CCGG 7 cut(s) 79, 135, 178, 187, 192, 200, 1242
MspR9I CCNGG 5 cut(s) 80, 169, 178, 1164, 1243
MunI CAATTG 3 cut(s) 369, 711, 1425
MvaI CCWGG 2 cut(s) 169, 1164
MvnI CGCG 3 cut(s) 29, 46, 208
MwoI GCNNNNNNNGC 4 cut(s) 43, 135, 205, 632
NciI CCSGG 3 cut(s) 80, 178, 1243
NcoI CCATGG 1 cut(s) 425
NdeII GATC 4 cut(s) 69, 183, 1111, 1554
NheI GCTAGC 1 cut(s) 1363
NlaIII CATG 7 cut(s) 429, 466, 490, 590, 857, 1151, 1217
NlaIV GGNNCC 2 cut(s) 185, 527
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 464
NspV TTCGAA 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 888
PagI TCATGA 1 cut(s) 1147
PciSI GCTCTTC 1 cut(s) 1269
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 156, 212
PdmI GAANNNNTTC 1 cut(s) 1263
PfeI GAWTC 3 cut(s) 341, 671, 1060
Pfl23II CGTACG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 176
PkrI GCNGC 7 cut(s) 33, 36, 166, 525, 637, 1359, 1362
PleI GAGTC 5 cut(s) 181, 385, 491, 517, 832
PpsI GAGTC 5 cut(s) 181, 385, 491, 517, 832
Ppu21I YACGTR 1 cut(s) 252
PshAI GACNNNNGTC 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 167, 1162
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 167, 1162
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 185, 527
PspPI GGNCC 5 cut(s) 137, 189, 242, 1160, 1321
PspXI VCTCGAGB 1 cut(s) 888
PstNI CAGNNNCTG 1 cut(s) 1357
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 2 cut(s) 218, 837
RsaNI GTAC 2 cut(s) 217, 836
Rsr2I CGGWCCG 1 cut(s) 189
RsrII CGGWCCG 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 1269
SaqAI TTAA 5 cut(s) 303, 549, 960, 1247, 1280
SatI GCNGC 7 cut(s) 32, 35, 165, 524, 636, 1358, 1361
Sau3AI GATC 4 cut(s) 69, 183, 1111, 1554
Sau96I GGNCC 5 cut(s) 137, 189, 242, 1160, 1321
SchI GAGTC 5 cut(s) 182, 386, 492, 518, 833
ScrFI CCNGG 5 cut(s) 80, 169, 178, 1164, 1243
SfaNI GCATC 3 cut(s) 849, 920, 1213
Sfr274I CTCGAG 1 cut(s) 888
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 3 cut(s) 189, 1160, 1321
SlaI CTCGAG 1 cut(s) 888
SmlI CTYRAG 2 cut(s) 888, 1273
SmoI CTYRAG 2 cut(s) 888, 1273
SsiI CCGC 4 cut(s) 32, 164, 523, 1361
SspI AATATT 2 cut(s) 1195, 1515
SspMI CTAG 3 cut(s) 974, 1364, 1493
StyD4I CCNGG 5 cut(s) 78, 167, 176, 1162, 1241
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 1334
TaiI ACGT 3 cut(s) 69, 218, 254
TaqI TCGA 6 cut(s) 54, 84, 105, 481, 889, 1557
TauI GCSGC 4 cut(s) 34, 167, 526, 1363
TfiI GAWTC 3 cut(s) 341, 671, 1060
Tru1I TTAA 5 cut(s) 303, 549, 960, 1247, 1280
Tru9I TTAA 5 cut(s) 303, 549, 960, 1247, 1280
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 34, 635, 1357
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 5 cut(s) 453, 479, 603, 1053, 1425
TspGWI ACGGA 3 cut(s) 124, 776, 1028
VpaK11BI GGWCC 3 cut(s) 189, 1160, 1321
XapI RAATTY 4 cut(s) 593, 617, 679, 1249
XhoI CTCGAG 1 cut(s) 888
XmnI GAANNNNTTC 1 cut(s) 1263
XspI CTAG 3 cut(s) 974, 1364, 1493
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.