TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 209 - 358 | 2.8e-22 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 769 |
| AccI | GTMKAC | 1 cut(s) | 418 |
| AccII | CGCG | 1 cut(s) | 321 |
| AciI | CCGC | 2 cut(s) | 181, 1124 |
| AclWI | GGATC | 1 cut(s) | 79 |
| AcoI | YGGCCR | 1 cut(s) | 1016 |
| AcsI | RAATTY | 4 cut(s) | 359, 475, 791, 896 |
| AcuI | CTGAAG | 4 cut(s) | 590, 854, 871, 1046 |
| AfaI | GTAC | 4 cut(s) | 445, 699, 750, 961 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 194, 769, 1157 |
| AjnI | CCWGG | 2 cut(s) | 628, 903 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 350, 382 |
| AluBI | AGCT | 4 cut(s) | 352, 778, 838, 991 |
| AluI | AGCT | 4 cut(s) | 352, 778, 838, 991 |
| Alw21I | GWGCWC | 1 cut(s) | 762 |
| Alw26I | GTCTC | 2 cut(s) | 376, 1119 |
| AlwI | GGATC | 1 cut(s) | 79 |
| AoxI | GGCC | 1 cut(s) | 1016 |
| ApeKI | GCWGC | 1 cut(s) | 1179 |
| ApoI | RAATTY | 4 cut(s) | 359, 475, 791, 896 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 575, 612 |
| AsuC2I | CCSGG | 1 cut(s) | 1020 |
| AsuHPI | GGTGA | 4 cut(s) | 254, 298, 911, 1042 |
| Bbv12I | GWGCWC | 1 cut(s) | 762 |
| BbvI | GCAGC | 1 cut(s) | 1191 |
| BccI | CCATC | 6 cut(s) | 415, 431, 666, 771, 836, 1008 |
| BciT130I | CCWGG | 2 cut(s) | 630, 905 |
| BcnI | CCSGG | 1 cut(s) | 1020 |
| BcoDI | GTCTC | 2 cut(s) | 376, 1119 |
| BfaI | CTAG | 1 cut(s) | 422 |
| BisI | GCNGC | 1 cut(s) | 1180 |
| BlsI | GCNGC | 1 cut(s) | 1181 |
| Bme1390I | CCNGG | 3 cut(s) | 630, 905, 1020 |
| BmrFI | CCNGG | 3 cut(s) | 630, 905, 1020 |
| BmsI | GCATC | 4 cut(s) | 44, 457, 479, 533 |
| BpuEI | CTTGAG | 2 cut(s) | 374, 1013 |
| BpuMI | CCSGG | 1 cut(s) | 1020 |
| BsaWI | WCCGGW | 1 cut(s) | 766 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 194, 769, 1157 |
| Bse1I | ACTGG | 3 cut(s) | 1151, 1167, 1180 |
| BseBI | CCWGG | 2 cut(s) | 630, 905 |
| BseGI | GGATG | 4 cut(s) | 59, 548, 763, 1116 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 194, 769, 1157 |
| BseMII | CTCAG | 2 cut(s) | 215, 636 |
| BseNI | ACTGG | 3 cut(s) | 1151, 1167, 1180 |
| BseXI | GCAGC | 1 cut(s) | 1191 |
| Bsh1236I | CGCG | 1 cut(s) | 321 |
| BshFI | GGCC | 1 cut(s) | 1018 |
| BsiHKAI | GWGCWC | 1 cut(s) | 762 |
| BsiSI | CCGG | 2 cut(s) | 767, 1019 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 194, 769, 1157 |
| BsmAI | GTCTC | 2 cut(s) | 376, 1119 |
| BsmI | GAATGC | 1 cut(s) | 333 |
| BsnI | GGCC | 1 cut(s) | 1018 |
| Bsp1286I | GDGCHC | 1 cut(s) | 762 |
| Bsp1407I | TGTACA | 1 cut(s) | 697 |
| Bsp143I | GATC | 3 cut(s) | 16, 71, 916 |
| BspACI | CCGC | 2 cut(s) | 181, 1124 |
| BspANI | GGCC | 1 cut(s) | 1018 |
| BspCNI | CTCAG | 2 cut(s) | 216, 637 |
| BspFNI | CGCG | 1 cut(s) | 321 |
| BspPI | GGATC | 1 cut(s) | 79 |
| BsrGI | TGTACA | 1 cut(s) | 697 |
| BsrI | ACTGG | 3 cut(s) | 1151, 1167, 1180 |
| BssMI | GATC | 3 cut(s) | 16, 71, 916 |
| Bst2UI | CCWGG | 2 cut(s) | 630, 905 |
| Bst4CI | ACNGT | 3 cut(s) | 713, 980, 1148 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1069, 1188 |
| BstAUI | TGTACA | 1 cut(s) | 697 |
| BstC8I | GCNNGC | 4 cut(s) | 140, 185, 876, 1193 |
| BstDEI | CTNAG | 4 cut(s) | 224, 299, 348, 645 |
| BstEII | GGTNACC | 1 cut(s) | 286 |
| BstF5I | GGATG | 4 cut(s) | 59, 548, 763, 1116 |
| BstFNI | CGCG | 1 cut(s) | 321 |
| BstKTI | GATC | 3 cut(s) | 19, 74, 919 |
| BstMAI | GTCTC | 2 cut(s) | 376, 1119 |
| BstMBI | GATC | 3 cut(s) | 16, 71, 916 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 349, 737, 1069, 1179, 1188 |
| BstNI | CCWGG | 2 cut(s) | 630, 905 |
| BstNSI | RCATGY | 1 cut(s) | 1195 |
| BstPI | GGTNACC | 1 cut(s) | 286 |
| BstSCI | CCNGG | 3 cut(s) | 628, 903, 1018 |
| BstUI | CGCG | 1 cut(s) | 321 |
| BstV1I | GCAGC | 1 cut(s) | 1191 |
| BstX2I | RGATCY | 1 cut(s) | 71 |
| BstYI | RGATCY | 1 cut(s) | 71 |
| BsuRI | GGCC | 1 cut(s) | 1018 |
| BtsCI | GGATG | 4 cut(s) | 59, 548, 763, 1116 |
| BtsIMutI | CAGTG | 4 cut(s) | 449, 895, 1173, 1174 |
| Cac8I | GCNNGC | 4 cut(s) | 140, 185, 876, 1193 |
| Csp6I | GTAC | 4 cut(s) | 444, 698, 749, 960 |
| CviAII | CATG | 5 cut(s) | 14, 50, 580, 755, 1192 |
| CviQI | GTAC | 4 cut(s) | 444, 698, 749, 960 |
| DdeI | CTNAG | 4 cut(s) | 224, 299, 348, 645 |
| DpnI | GATC | 3 cut(s) | 18, 73, 918 |
| DpnII | GATC | 3 cut(s) | 16, 71, 916 |
| DraI | TTTAAA | 1 cut(s) | 78 |
| EaeI | YGGCCR | 1 cut(s) | 1016 |
| Eco57I | CTGAAG | 4 cut(s) | 590, 854, 871, 1046 |
| Eco91I | GGTNACC | 1 cut(s) | 286 |
| EcoO65I | GGTNACC | 1 cut(s) | 286 |
| EcoRI | GAATTC | 1 cut(s) | 791 |
| EcoRII | CCWGG | 2 cut(s) | 628, 903 |
| EcoT22I | ATGCAT | 1 cut(s) | 472 |
| FaeI | CATG | 5 cut(s) | 17, 53, 583, 758, 1195 |
| FatI | CATG | 5 cut(s) | 13, 49, 579, 754, 1191 |
| FblI | GTMKAC | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 1 cut(s) | 1180 |
| FokI | GGATG | 4 cut(s) | 66, 555, 750, 1123 |
| Fsp4HI | GCNGC | 1 cut(s) | 1180 |
| FspBI | CTAG | 1 cut(s) | 422 |
| GluI | GCNGC | 1 cut(s) | 1180 |
| HaeIII | GGCC | 1 cut(s) | 1018 |
| HapII | CCGG | 2 cut(s) | 767, 1019 |
| Hin1II | CATG | 5 cut(s) | 17, 53, 583, 758, 1195 |
| HindIII | AAGCTT | 2 cut(s) | 350, 776 |
| HinfI | GANTC | 4 cut(s) | 295, 591, 911, 1044 |
| HpaII | CCGG | 2 cut(s) | 767, 1019 |
| HphI | GGTGA | 4 cut(s) | 254, 298, 911, 1042 |
| Hpy166II | GTNNAC | 1 cut(s) | 419 |
| Hpy188I | TCNGA | 6 cut(s) | 219, 400, 663, 916, 1026, 1053 |
| Hpy188III | TCNNGA | 4 cut(s) | 96, 389, 644, 796 |
| Hpy8I | GTNNAC | 1 cut(s) | 419 |
| HpyAV | CCTTC | 6 cut(s) | 102, 239, 413, 533, 1021, 1027 |
| HpyCH4III | ACNGT | 3 cut(s) | 713, 980, 1148 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 349, 737, 1069, 1179, 1188 |
| HpyF3I | CTNAG | 4 cut(s) | 224, 299, 348, 645 |
| Hsp92II | CATG | 5 cut(s) | 17, 53, 583, 758, 1195 |
| Kzo9I | GATC | 3 cut(s) | 16, 71, 916 |
| LmnI | GCTCC | 1 cut(s) | 248 |
| Lsp1109I | GCAGC | 1 cut(s) | 1191 |
| LweI | GCATC | 4 cut(s) | 44, 457, 479, 533 |
| MaeI | CTAG | 1 cut(s) | 422 |
| MaeIII | GTNAC | 2 cut(s) | 269, 286 |
| MalI | GATC | 3 cut(s) | 18, 73, 918 |
| MboI | GATC | 3 cut(s) | 16, 71, 916 |
| MboII | GAAGA | 3 cut(s) | 583, 812, 905 |
| MfeI | CAATTG | 1 cut(s) | 514 |
| MflI | RGATCY | 1 cut(s) | 71 |
| MhlI | GDGCHC | 1 cut(s) | 762 |
| MlyI | GAGTC | 1 cut(s) | 1053 |
| MnlI | CCTC | 3 cut(s) | 29, 289, 597 |
| Mph1103I | ATGCAT | 1 cut(s) | 472 |
| MroXI | GAANNNNTTC | 2 cut(s) | 575, 612 |
| MseI | TTAA | 8 cut(s) | 77, 159, 209, 363, 428, 488, 680, 804 |
| MslI | CAYNNNNRTG | 1 cut(s) | 663 |
| MspI | CCGG | 2 cut(s) | 767, 1019 |
| MspR9I | CCNGG | 3 cut(s) | 630, 905, 1020 |
| MunI | CAATTG | 1 cut(s) | 514 |
| Mva1269I | GAATGC | 1 cut(s) | 333 |
| MvaI | CCWGG | 2 cut(s) | 630, 905 |
| MvnI | CGCG | 1 cut(s) | 321 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 349, 737, 1069, 1179, 1188 |
| NciI | CCSGG | 1 cut(s) | 1020 |
| NdeII | GATC | 3 cut(s) | 16, 71, 916 |
| NlaIII | CATG | 5 cut(s) | 17, 53, 583, 758, 1195 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| NsiI | ATGCAT | 1 cut(s) | 472 |
| NspI | RCATGY | 1 cut(s) | 1195 |
| PaeI | GCATGC | 1 cut(s) | 1195 |
| PctI | GAATGC | 1 cut(s) | 333 |
| PdmI | GAANNNNTTC | 2 cut(s) | 575, 612 |
| PfeI | GAWTC | 3 cut(s) | 295, 591, 911 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 769 |
| PfoI | TCCNGGA | 1 cut(s) | 628 |
| PkrI | GCNGC | 1 cut(s) | 1181 |
| PleI | GAGTC | 1 cut(s) | 1052 |
| PpsI | GAGTC | 1 cut(s) | 1052 |
| Psp6I | CCWGG | 2 cut(s) | 628, 903 |
| PspEI | GGTNACC | 1 cut(s) | 286 |
| PspGI | CCWGG | 2 cut(s) | 628, 903 |
| PsuI | RGATCY | 1 cut(s) | 71 |
| RsaI | GTAC | 4 cut(s) | 445, 699, 750, 961 |
| RsaNI | GTAC | 4 cut(s) | 444, 698, 749, 960 |
| RseI | CAYNNNNRTG | 1 cut(s) | 663 |
| SaqAI | TTAA | 8 cut(s) | 77, 159, 209, 363, 428, 488, 680, 804 |
| SatI | GCNGC | 1 cut(s) | 1180 |
| Sau3AI | GATC | 3 cut(s) | 16, 71, 916 |
| SchI | GAGTC | 1 cut(s) | 1053 |
| ScrFI | CCNGG | 3 cut(s) | 630, 905, 1020 |
| SduI | GDGCHC | 1 cut(s) | 762 |
| SfaNI | GCATC | 4 cut(s) | 44, 457, 479, 533 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 663 |
| SmlI | CTYRAG | 2 cut(s) | 353, 992 |
| SmoI | CTYRAG | 2 cut(s) | 353, 992 |
| SphI | GCATGC | 1 cut(s) | 1195 |
| SsiI | CCGC | 2 cut(s) | 181, 1124 |
| SspI | AATATT | 1 cut(s) | 640 |
| SspMI | CTAG | 1 cut(s) | 422 |
| StyD4I | CCNGG | 3 cut(s) | 628, 903, 1018 |
| TaaI | ACNGT | 3 cut(s) | 713, 980, 1148 |
| TaqI | TCGA | 2 cut(s) | 337, 840 |
| TatI | WGTACW | 3 cut(s) | 443, 697, 748 |
| TfiI | GAWTC | 3 cut(s) | 295, 591, 911 |
| Tru1I | TTAA | 8 cut(s) | 77, 159, 209, 363, 428, 488, 680, 804 |
| Tru9I | TTAA | 8 cut(s) | 77, 159, 209, 363, 428, 488, 680, 804 |
| TscAI | CASTG | 4 cut(s) | 456, 895, 1174, 1180 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| TseI | GCWGC | 1 cut(s) | 1179 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 6 cut(s) | 38, 499, 552, 568, 666, 804 |
| TspGWI | ACGGA | 1 cut(s) | 1037 |
| TspRI | CASTG | 4 cut(s) | 456, 895, 1174, 1180 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 769 |
| XapI | RAATTY | 4 cut(s) | 359, 475, 791, 896 |
| XceI | RCATGY | 1 cut(s) | 1195 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 665 |
| XmiI | GTMKAC | 1 cut(s) | 418 |
| XmnI | GAANNNNTTC | 2 cut(s) | 575, 612 |
| XspI | CTAG | 1 cut(s) | 422 |
| Zsp2I | ATGCAT | 1 cut(s) | 472 |