Rorug01G0037900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000105
Physical Location & Seq
Reverse (-)
6245851 .. 6247328
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0037900.1

Sequence Viewer

Length: 852 bp
ATGCACATCCGTCCTGCTTTCCATGGGGCTCTACTGGGTCTCTGGATCTGCTTGTTTACTTCAAGCTTCTGCTACGGTGATGAGAAGACCATCGAGGCAGCCGGAGGGCCAAGCAAAGTTTTCTCAGAGTTGAAAACAACTGAGGCTGCAGAGCTCAATGAAGAGGGAAAGTTTGCAGTACTACCACCAAAGCCGTTCTTCAAGAAACCACTTCTGCACAAGGTTCCCACTCTGAAGAAGCCATTTCCAGAAAAGCCGTACTTCAAGAAACCACCTTTACATAAGATTCCCATTGTCAAAAAGCCATCACCACCATCTGTTCCTGTTTTCAAGATCCCACCGTTTAAGAAGCCGATTCCTTCCCCAATTCCACAAGAAGAAAAACCTTTTTTGAAAAAGCCATATTTCCATCCAGTTCCAGTTTACAAGAAGCCAATTTTACCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTCCCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTTCATCCAGTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATGTCCTCCACTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAATTCCGGTTTACAAAAAACCATTTTTCCCCCCAGTTCCGAAATTTAAGAAGCCAGTTTTCTCCCCAGTTCCGGTTTACAAGAAACCATTTTTCTCTCCATTTCCAAAATTTAAGAAGCCATTTCCTCCACATGTGGCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

283

Amino Acids

32.51

Weight (kDa)

10.07

Isoelectric Point (pI)

65.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 53, 328
AcsI RAATTY 2 cut(s) 749, 815
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 180, 260
AfiI CCNNNNNNNGG 6 cut(s) 451, 517, 583, 649, 712, 778
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 6 cut(s) 63, 133, 202, 265, 331, 394
AluBI AGCT 2 cut(s) 66, 154
AluI AGCT 2 cut(s) 66, 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 53, 328
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 98, 146
ApoI RAATTY 2 cut(s) 749, 815
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 89, 300
BanII GRGCYC 2 cut(s) 31, 156
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 110, 133
BccI CCATC 6 cut(s) 98, 313, 322, 417, 483, 549
BceAI ACGGC 2 cut(s) 178, 241
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 850
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 99, 147
BlsI GCNGC 2 cut(s) 100, 148
BmcAI AGTACT 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 225, 846
BmrI ACTGGG 7 cut(s) 44, 440, 506, 572, 638, 734, 767
BmuI ACTGGG 7 cut(s) 44, 440, 506, 572, 638, 734, 767
BpiI GAAGAC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 6 cut(s) 484, 550, 616, 679, 712, 778
Bsc4I CCNNNNNNNGG 6 cut(s) 451, 517, 583, 649, 712, 778
Bse118I RCCGGY 4 cut(s) 451, 517, 583, 649
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 5 cut(s) 6, 409, 475, 541, 607
BseLI CCNNNNNNNGG 6 cut(s) 451, 517, 583, 649, 712, 778
BseMII CTCAG 2 cut(s) 132, 138
BseXI GCAGC 2 cut(s) 110, 133
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 156
BslI CCNNNNNNNGG 6 cut(s) 451, 517, 583, 649, 712, 778
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 31, 156
Bsp143I GATC 2 cut(s) 45, 333
Bsp19I CCATGG 1 cut(s) 22
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 133, 137
BspLI GGNNCC 2 cut(s) 225, 846
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 53, 328
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 4 cut(s) 451, 517, 583, 649
BssAI RCCGGY 4 cut(s) 451, 517, 583, 649
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 45, 333
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 77, 342
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 124, 141
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 5 cut(s) 6, 409, 475, 541, 607
BstKTI GATC 2 cut(s) 48, 336
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 45, 333
BstNSI RCATGY 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 110, 133
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 45, 333
BstYI RGATCY 2 cut(s) 45, 333
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 5 cut(s) 6, 409, 475, 541, 607
BtsIMutI CAGTG 4 cut(s) 453, 519, 585, 651
Cfr10I RCCGGY 4 cut(s) 451, 517, 583, 649
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 179, 259
CviAII CATG 3 cut(s) 23, 666, 839
CviQI GTAC 2 cut(s) 179, 259
DdeI CTNAG 2 cut(s) 124, 141
DpnI GATC 2 cut(s) 47, 335
DpnII GATC 2 cut(s) 45, 333
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 31, 156
Eco31I GGTCTC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 2 cut(s) 31, 156
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 26, 669, 842
FaiI YATR 8 cut(s) 24, 282, 403, 469, 535, 601, 667, 840
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 245, 277
FatI CATG 3 cut(s) 22, 665, 838
Fnu4HI GCNGC 2 cut(s) 99, 147
FokI GGATG 4 cut(s) 396, 462, 528, 594
FriOI GRGCYC 2 cut(s) 31, 156
Fsp4HI GCNGC 2 cut(s) 99, 147
FspBI CTAG 1 cut(s) 850
GluI GCNGC 2 cut(s) 99, 147
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 3 cut(s) 26, 669, 842
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 2 cut(s) 286, 355
HphI GGTGA 2 cut(s) 89, 300
Hpy188I TCNGA 3 cut(s) 127, 234, 747
Hpy188III TCNNGA 5 cut(s) 43, 202, 248, 265, 331
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 77, 342
HpyCH4V TGCA 4 cut(s) 4, 149, 176, 217
HpyF3I CTNAG 2 cut(s) 124, 141
Hsp92II CATG 3 cut(s) 26, 669, 842
Kzo9I GATC 2 cut(s) 45, 333
LmnI GCTCC 1 cut(s) 850
Lsp1109I GCAGC 2 cut(s) 110, 133
MaeI CTAG 1 cut(s) 850
MalI GATC 2 cut(s) 47, 335
MboI GATC 2 cut(s) 45, 333
MboII GAAGA 5 cut(s) 97, 173, 190, 247, 389
MflI RGATCY 2 cut(s) 45, 333
MhlI GDGCHC 2 cut(s) 31, 156
MluCI AATT 9 cut(s) 366, 435, 501, 567, 633, 696, 708, 749, 815
MnlI CCTC 6 cut(s) 88, 98, 136, 157, 681, 843
MseI TTAA 3 cut(s) 345, 753, 819
NcoI CCATGG 1 cut(s) 22
NdeII GATC 2 cut(s) 45, 333
NlaIII CATG 3 cut(s) 26, 669, 842
NlaIV GGNNCC 2 cut(s) 225, 846
NspI RCATGY 1 cut(s) 842
PciI ACATGT 1 cut(s) 838
PfeI GAWTC 2 cut(s) 286, 355
PkrI GCNGC 2 cut(s) 100, 148
PscI ACATGT 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 225, 846
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 45, 333
RsaI GTAC 2 cut(s) 180, 260
RsaNI GTAC 2 cut(s) 179, 259
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 345, 753, 819
SatI GCNGC 2 cut(s) 99, 147
Sau3AI GATC 2 cut(s) 45, 333
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 180
SduI GDGCHC 2 cut(s) 31, 156
SetI ASST 5 cut(s) 68, 156, 225, 277, 388
SfcI CTRYAG 1 cut(s) 147
Sse9I AATT 9 cut(s) 366, 435, 501, 567, 633, 696, 708, 749, 815
SspMI CTAG 1 cut(s) 850
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 77, 342
TaqI TCGA 1 cut(s) 93
TasI AATT 9 cut(s) 366, 435, 501, 567, 633, 696, 708, 749, 815
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 286, 355
Tru1I TTAA 3 cut(s) 345, 753, 819
Tru9I TTAA 3 cut(s) 345, 753, 819
TscAI CASTG 4 cut(s) 453, 519, 585, 651
TseI GCWGC 2 cut(s) 98, 146
TspDTI ATGAA 2 cut(s) 174, 596
TspRI CASTG 4 cut(s) 453, 519, 585, 651
XapI RAATTY 2 cut(s) 749, 815
XceI RCATGY 1 cut(s) 842
XspI CTAG 1 cut(s) 850
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.