RchiOBHm_Chr1g0315021

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000105
Physical Location & Seq
Reverse (-)
2286800 .. 2287758
959 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54557

Sequence Viewer

Length: 729 bp
ATGTCTAAAACCAATGGCCTAGTTTCTCTACAAGAAAAACTTCTTTCCAAAATCCAGATGGCAAAAGTTGAAAATATAGAGGATGAATACACAGGAGCTGCTATGATAGAAAGGCGGTTGTGTAGAATAAAGGTGCTTGTTGTTATTGATGACGTGGATCAGTTGACACAATTAGAGAAATTGGCTGGAAGTCGCAACTGGTTTGGTCCAGGGAGTAGAATCATCATAACCACCACAGATATTCAGTTGTTAAAGGCGCATGATGTTGATGCTACATACAAGGCTATTGGGTTAAACTGTGATGAAGCACTTCAACTTTTGAGTTTGAAAGCTTTTAAGAAATGTCCCCCACCAGAAGATTATTTGCATCTGTGCTACCATATTTTAGGGTACGCTCAGGGGCTTCCGTTGGCGGTTGTGGTTTTAGGTTCATTGAAGTGTAATCATCTCATCTCTCTCAATTTTTGGTTCTTCAACAATGGCTGCCGCCTTCATCTCTCGCAGATTCAGCTCAAAGCTCGTAAGACCCTCTCACTCTTCTTCATCGTTCTCCTCCATATCCTCCACCTAGCTACTTCATCACCCAAAAGCTCCAAAACCCTACTCCTAAACCCTTCATCACTCGCTCTTCCAATTCCACTTTTTCACAAACACCCTCAAACCCTTTCATATCTACTTCAAACCCCAACTCCATTTTCAAAGACTACAAAGGAACAGCACCAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.19

Weight (kDa)

9.19

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 114 2.7e-09 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 115, 413, 487
AclWI GGATC 1 cut(s) 165
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 7 cut(s) 71, 314, 328, 436, 475, 680, 699
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AluBI AGCT 6 cut(s) 98, 332, 511, 518, 572, 591
AluI AGCT 6 cut(s) 98, 332, 511, 518, 572, 591
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 98, 483
Asp700I GAANNNNTTC 2 cut(s) 39, 309
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 573
AvaII GGWCC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 85, 470
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 2 cut(s) 20, 569
BisI GCNGC 3 cut(s) 99, 484, 487
BlsI GCNGC 3 cut(s) 100, 485, 488
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 2 cut(s) 259, 376
Bpu10I CCTNAGC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 2 cut(s) 85, 470
BshFI GGCC 1 cut(s) 18
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 3 cut(s) 115, 413, 487
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 633
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 2 cut(s) 542, 633
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 85, 470
BsuRI GGCC 1 cut(s) 18
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 260
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 396
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 542, 633
EarI CTCTTC 2 cut(s) 542, 633
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 263
FaiI YATR 8 cut(s) 77, 104, 227, 261, 277, 381, 558, 670
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 99, 484, 487
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 99, 484, 487
FspBI CTAG 2 cut(s) 20, 569
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 99, 484, 487
HaeIII GGCC 1 cut(s) 18
HhaI GCGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 2 cut(s) 219, 505
HphI GGTGA 1 cut(s) 573
Hpy166II GTNNAC 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 500, 624
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 2 cut(s) 95, 596
LpnPI CCDG 8 cut(s) 68, 78, 171, 184, 195, 222, 366, 383
Lsp1109I GCAGC 2 cut(s) 85, 470
LweI GCATC 2 cut(s) 259, 376
MaeI CTAG 2 cut(s) 20, 569
MaeII ACGT 1 cut(s) 153
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 5 cut(s) 368, 463, 529, 532, 620
MluCI AATT 4 cut(s) 170, 179, 460, 633
MnlI CCTC 5 cut(s) 73, 539, 563, 572, 666
MroXI GAANNNNTTC 2 cut(s) 39, 309
MseI TTAA 3 cut(s) 251, 293, 336
MslI CAYNNNNRTG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 508
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 633
PdmI GAANNNNTTC 2 cut(s) 39, 309
PfeI GAWTC 2 cut(s) 219, 505
PkrI GCNGC 3 cut(s) 100, 485, 488
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 3 cut(s) 251, 293, 336
SatI GCNGC 3 cut(s) 99, 484, 487
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 210
SfaNI GCATC 2 cut(s) 259, 376
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 436
Sse9I AATT 4 cut(s) 170, 179, 460, 633
SsiI CCGC 3 cut(s) 115, 413, 487
SspMI CTAG 2 cut(s) 20, 569
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 156
TasI AATT 4 cut(s) 170, 179, 460, 633
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 2 cut(s) 219, 505
Tru1I TTAA 3 cut(s) 251, 293, 336
Tru9I TTAA 3 cut(s) 251, 293, 336
TseI GCWGC 2 cut(s) 98, 483
TspDTI ATGAA 8 cut(s) 99, 318, 420, 482, 532, 567, 606, 657
TspGWI ACGGA 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmnI GAANNNNTTC 2 cut(s) 39, 309
XspI CTAG 2 cut(s) 20, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.