Rroxscaffold_4G00326960

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000105
Physical Location & Seq
Forward (+)
59294963 .. 59299267
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326960.1

Sequence Viewer

Length: 2187 bp
ATGGCGTCAACCTCTTCTCATCGTCAATGGAAATACGATGTGTTTCTAAGTTTCAGAGGGGAAGATACCCGCTGGTCTTTTACCGATCGTCTGTATTCTGCACTAAATCAGAAAGGAATTCACACCTTTCTGGATGACCGAGAGCTTGAGAAAGGAAAATCCATTAGGCCTGAACTTTTAGTTGCAATTGAGCAGTCTAGATCTGCGATTATCATTCTTTCACCCAGATATGCTGCTTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGACATGGGCCAACAAGTCCTCCCCGTCTTCTACGGCGTGCTTCCTTCTGTTGTGCGGCACCAAAGGGGAAGTTTTGAGCTCGAAAGCAAAGCCCAAGTAGATGTGGAAGTAAGGGAACATGAAGAAGTTTATGGGCAGAATAATGAGGACAGACTAAATGCGTGGAGAGCTGCCTTGACACAGGTGGCCAATCTTTCTGGCTGGGATTTCAACAATTATCGAAATCCAACAAATCTAATTGAGGAAATTGTTAATCACATACTAAAGAAGTCCGTGTATATATCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGGTTCCCGCATTGATGATTTATTAAGCAATTACATATGTCCACAGCTTTGTGGGGGAACAGATTCAATCCATGGCATGGTAATGGAGTTGACAAAATTACGAGTGGCTCATTGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTAGTCTTCTCCATATTCGTAATGTGGACCTTCCCAAAGGCCTCACTTGTCTTTCTAATTCCTTGAGACTTCTCGAATGGACTGGGTATCCCTTAAGATCTCTCCCAAATTTTTTTGAAGCAGATGAACTTATTGAACTTAACTTGTGCCACAGCAACATTAAACAGCTATGGAAGGGAACAAAGATGGACTGTTTTGAGGAAACTGACGTGAATAGTGGGTCTGCAATAGAAATGTCATCTACCCATGATCGCATAAAATATGTGAGACGTTCAATCTTTCATGGATGCAAAGTAGTTTGGAGATCTTTAAATAAGTTCTTGCCTTCTGGATTGGTGCCAAAGGTGAATACAGAGCCAACGAGTTTTGGCTTGCCTATATCTCAAAAAGTGAATACAGAGCCAATGAGTTTCCACTTGCCTATTTCTGGTCTGTGTAATTTAACGTATCTGAACCTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAAACTAAGTGGAAACAATTTTGTTCGCGTTCCTTCAGGCATTCGATTGCTTTCTAAGCTTGAGAACTTTAACCTGGAGAATTTCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAACAGTAGACTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACAGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAATGGCAATGAAGGATGCAATAACATAGCATTTGAAATGCTTAAGACATTCATGTATCAGGGAATCTCTAATAAGAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTTCTGAGTGGTTCAGCCATCAGAGTGTTGGGTATTCATTAAGTGTATCTCTACCTGTACATTGGAATAACAGTCGGTTTTTGGGATTTGCTTTGTGTGCTGTTTTTGTACTCCATGAGCACCATCCGGTGGATGAGCTTTATATAGATGAATTCAAGACTTTTAATGCAACGCATCATCTTGTATGTTGCCTGAAGCTCGATGGAAGAGAATTGGAAGTATATGGCAGACAGCCTGCATTTCGCTTTAGTGAAGAATTTTTCCAGGTTGAATCAGATCACCTGTGGCTATTCTATGTTTCTCGTGATAAATACTTTGGTACAGAGTGGTGGCGTAACAGTTGCAGTCAGCTTGAGTTCTTATTTGAAACAAGAGGGCCGGGTCTGAAGGTGAAGGAGTGTGGAGTCCGTCTGATATATGAGCAAGAAGTGCAACAGTTGAACCAAACAACCACTCAATCAAGCAGTAGGATGTCTCCTTATGCGGATCTATTGATTGGTTTTGACATTCCAGTTGCAGGGGAAACCAGTGGCACTAGTAGCAGAACTTGCACGCTTGAAGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

728

Amino Acids

83.23

Weight (kDa)

6.16

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 192 1.1e-50 TIR domain
TIR_2 PF13676 14 - 110 2.5e-16 TIR domain
C-JID PF20160 535 - 684 1.8e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 342, 1081
AccB7I CCANNNNNTGG 2 cut(s) 676, 1747
AccI GTMKAC 1 cut(s) 1396
AccII CGCG 1 cut(s) 1299
AciI CCGC 4 cut(s) 70, 340, 607, 2102
AclWI GGATC 1 cut(s) 2112
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 8 cut(s) 117, 733, 853, 1241, 1351, 1453, 1769, 1874
AcuI CTGAAG 3 cut(s) 1290, 1832, 2024
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 1423, 1677, 1728, 1939
AfiI CCNNNNNNNGG 4 cut(s) 676, 1172, 1747, 2135
AflII CTTAAG 2 cut(s) 838, 1547
AhlI ACTAGT 1 cut(s) 2153
AjiI CACGTC 1 cut(s) 955
AjnI CCWGG 3 cut(s) 1344, 1606, 1881
AluBI AGCT 9 cut(s) 145, 364, 455, 646, 913, 1330, 1756, 1816, 1969
AluI AGCT 9 cut(s) 145, 364, 455, 646, 913, 1330, 1756, 1816, 1969
Alw21I GWGCWC 2 cut(s) 366, 1740
Alw26I GTCTC 5 cut(s) 744, 805, 1006, 1354, 2097
AlwI GGATC 1 cut(s) 2112
AoxI GGCC 5 cut(s) 167, 292, 471, 784, 1994
ApeKI GCWGC 2 cut(s) 233, 455
ApoI RAATTY 8 cut(s) 117, 733, 853, 1241, 1351, 1453, 1769, 1874
Asp700I GAANNNNTTC 3 cut(s) 601, 661, 1590
AspS9I GGNCC 3 cut(s) 292, 772, 1994
AsuC2I CCSGG 1 cut(s) 1998
AsuHPI GGTGA 6 cut(s) 213, 1102, 1232, 1276, 1889, 2020
AvaII GGWCC 1 cut(s) 772
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 2 cut(s) 342, 1081
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 1 cut(s) 1920
BbsI GAAGAC 2 cut(s) 304, 743
Bbv12I GWGCWC 2 cut(s) 366, 1740
BbvI GCAGC 2 cut(s) 220, 442
BccI CCATC 6 cut(s) 925, 1393, 1409, 1644, 1749, 1814
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 3 cut(s) 1346, 1608, 1883
BciVI GTATCC 1 cut(s) 843
BcnI CCSGG 1 cut(s) 1998
BcoDI GTCTC 5 cut(s) 744, 805, 1006, 1354, 2097
BcuI ACTAGT 1 cut(s) 2153
BfaI CTAG 3 cut(s) 198, 1400, 2154
BfrI CTTAAG 2 cut(s) 838, 1547
BfuI GTATCC 1 cut(s) 843
BglII AGATCT 3 cut(s) 200, 842, 1049
BisI GCNGC 3 cut(s) 234, 341, 456
BlsI GCNGC 3 cut(s) 235, 342, 457
Bme1390I CCNGG 4 cut(s) 1346, 1608, 1883, 1998
Bme18I GGWCC 1 cut(s) 772
BmgBI CACGTC 1 cut(s) 955
BmgT120I GGNCC 3 cut(s) 292, 772, 1994
BmiI GGNNCC 3 cut(s) 344, 604, 1083
BmrFI CCNGG 4 cut(s) 1346, 1608, 1883, 1998
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 5 cut(s) 1022, 1435, 1457, 1511, 1801
BmuI ACTGGG 1 cut(s) 837
BpiI GAAGAC 2 cut(s) 304, 743
BpmI CTGGAG 1 cut(s) 1367
BpuEI CTTGAG 4 cut(s) 167, 829, 1352, 1991
BpuMI CCSGG 1 cut(s) 1998
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 670
BsaWI WCCGGW 1 cut(s) 1744
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 676, 1172, 1747, 2135
Bse1I ACTGG 3 cut(s) 832, 2129, 2145
Bse3DI GCAATG 1 cut(s) 1519
BseBI CCWGG 3 cut(s) 1346, 1608, 1883
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 7 cut(s) 139, 259, 1037, 1526, 1741, 1756, 2094
BseLI CCNNNNNNNGG 4 cut(s) 676, 1172, 1747, 2135
BseMI GCAATG 1 cut(s) 1519
BseMII CTCAG 2 cut(s) 1193, 1614
BseNI ACTGG 3 cut(s) 832, 2129, 2145
BseXI GCAGC 2 cut(s) 220, 442
BseYI CCCAGC 1 cut(s) 486
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 1299
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 5 cut(s) 169, 294, 473, 786, 1996
BshNI GGYRCC 2 cut(s) 342, 1081
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 366, 1740
BsiSI CCGG 2 cut(s) 1745, 1997
BslI CCNNNNNNNGG 4 cut(s) 676, 1172, 1747, 2135
BsmAI GTCTC 5 cut(s) 744, 805, 1006, 1354, 2097
BsmBI CGTCTC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 5 cut(s) 169, 294, 473, 786, 1996
Bsp1286I GDGCHC 2 cut(s) 366, 1740
Bsp1407I TGTACA 1 cut(s) 1675
Bsp143I GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 4 cut(s) 70, 340, 607, 2102
BspANI GGCC 5 cut(s) 169, 294, 473, 786, 1996
BspCNI CTCAG 2 cut(s) 1194, 1615
BspFNI CGCG 1 cut(s) 1299
BspLI GGNNCC 3 cut(s) 344, 604, 1083
BspPI GGATC 1 cut(s) 2112
BspT107I GGYRCC 2 cut(s) 342, 1081
BspTI CTTAAG 2 cut(s) 838, 1547
BsrDI GCAATG 1 cut(s) 1519
BsrGI TGTACA 1 cut(s) 1675
BsrI ACTGG 3 cut(s) 832, 2129, 2145
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1920
BssT1I CCWWGG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 1920
Bst2UI CCWGG 3 cut(s) 1346, 1608, 1883
Bst4CI ACNGT 5 cut(s) 938, 1394, 1691, 1958, 2055
Bst6I CTCTTC 2 cut(s) 19, 1819
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 838, 1547
BstAPI GCANNNNNTGC 2 cut(s) 2047, 2166
BstAUI TGTACA 1 cut(s) 1675
BstC8I GCNNGC 4 cut(s) 323, 1118, 1854, 2171
BstDEI CTNAG 6 cut(s) 47, 746, 1202, 1277, 1326, 1623
BstDSI CCRYGG 1 cut(s) 670
BstEII GGTNACC 1 cut(s) 1264
BstF5I GGATG 7 cut(s) 139, 259, 1037, 1526, 1741, 1756, 2094
BstFNI CGCG 1 cut(s) 1299
BstKTI GATC 7 cut(s) 88, 203, 845, 997, 1052, 1897, 2107
BstMAI GTCTC 5 cut(s) 744, 805, 1006, 1354, 2097
BstMBI GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 6 cut(s) 452, 1327, 1715, 2047, 2157, 2166
BstNI CCWGG 3 cut(s) 1346, 1608, 1883
BstPI GGTNACC 1 cut(s) 1264
BstSCI CCNGG 4 cut(s) 1344, 1606, 1881, 1996
BstUI CGCG 1 cut(s) 1299
BstV1I GCAGC 2 cut(s) 220, 442
BstV2I GAAGAC 2 cut(s) 304, 743
BstX2I RGATCY 4 cut(s) 200, 842, 1049, 2104
BstYI RGATCY 4 cut(s) 200, 842, 1049, 2104
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 5 cut(s) 169, 294, 473, 786, 1996
BtgI CCRYGG 1 cut(s) 670
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 7 cut(s) 139, 259, 1037, 1526, 1741, 1756, 2094
BtsIMutI CAGTG 2 cut(s) 1427, 2152
Cac8I GCNNGC 4 cut(s) 323, 1118, 1854, 2171
Cfr13I GGNCC 3 cut(s) 292, 772, 1994
Csp6I GTAC 4 cut(s) 1422, 1676, 1727, 1938
CviQI GTAC 4 cut(s) 1422, 1676, 1727, 1938
DdeI CTNAG 6 cut(s) 47, 746, 1202, 1277, 1326, 1623
DpnI GATC 7 cut(s) 87, 202, 844, 996, 1051, 1896, 2106
DpnII GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
DraI TTTAAA 1 cut(s) 1056
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 19, 1819
EarI CTCTTC 2 cut(s) 19, 1819
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 670
Eco147I AGGCCT 2 cut(s) 169, 786
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 772
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 3 cut(s) 1290, 1832, 2024
Eco91I GGTNACC 1 cut(s) 1264
EcoICRI GAGCTC 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 1264
EcoRI GAATTC 2 cut(s) 117, 1769
EcoRII CCWGG 3 cut(s) 1344, 1606, 1881
EcoT14I CCWWGG 1 cut(s) 670
EcoT22I ATGCAT 2 cut(s) 281, 1450
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 1006
FauI CCCGC 2 cut(s) 77, 614
FauNDI CATATG 1 cut(s) 635
FblI GTMKAC 1 cut(s) 1396
Fnu4HI GCNGC 3 cut(s) 234, 341, 456
FokI GGATG 7 cut(s) 146, 266, 1044, 1533, 1728, 1763, 2101
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 234, 341, 456
FspBI CTAG 3 cut(s) 198, 1400, 2154
GluI GCNGC 3 cut(s) 234, 341, 456
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 1367
HaeIII GGCC 5 cut(s) 169, 294, 473, 786, 1996
HapII CCGG 2 cut(s) 1745, 1997
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 9, 580, 690
HindII GTYRAC 3 cut(s) 9, 580, 690
HindIII AAGCTT 1 cut(s) 1328
HinfI GANTC 4 cut(s) 662, 1569, 1889, 2022
HpaII CCGG 2 cut(s) 1745, 1997
HphI GGTGA 6 cut(s) 213, 1102, 1232, 1276, 1889, 2020
Hpy166II GTNNAC 6 cut(s) 9, 580, 641, 690, 772, 1397
Hpy188I TCNGA 9 cut(s) 56, 111, 1197, 1378, 1624, 1641, 1894, 2004, 2031
Hpy188III TCNNGA 9 cut(s) 131, 198, 265, 818, 1074, 1357, 1367, 1774, 1922
Hpy8I GTNNAC 6 cut(s) 9, 580, 641, 690, 772, 1397
HpyCH4III ACNGT 5 cut(s) 938, 1394, 1691, 1958, 2055
HpyCH4IV ACGT 3 cut(s) 954, 1015, 1190
HpyF10VI GCNNNNNNNGC 6 cut(s) 452, 1327, 1715, 2047, 2157, 2166
HpyF3I CTNAG 6 cut(s) 47, 746, 1202, 1277, 1326, 1623
HpySE526I ACGT 3 cut(s) 954, 1015, 1190
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
LmnI GCTCC 1 cut(s) 1226
Lsp1109I GCAGC 2 cut(s) 220, 442
LweI GCATC 5 cut(s) 1022, 1435, 1457, 1511, 1801
MaeI CTAG 3 cut(s) 198, 1400, 2154
MaeII ACGT 3 cut(s) 954, 1015, 1190
MaeIII GTNAC 3 cut(s) 1247, 1264, 1952
MalI GATC 7 cut(s) 87, 202, 844, 996, 1051, 1896, 2106
MboI GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
MboII GAAGA 8 cut(s) 6, 74, 304, 419, 561, 743, 1836, 1883
MfeI CAATTG 2 cut(s) 186, 1492
MflI RGATCY 4 cut(s) 200, 842, 1049, 2104
MhlI GDGCHC 2 cut(s) 366, 1740
MlsI TGGCCA 1 cut(s) 473
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 1 cut(s) 2031
MmeI TCCRAC 1 cut(s) 536
Mox20I TGGCCA 1 cut(s) 473
Mph1103I ATGCAT 2 cut(s) 281, 1450
MroXI GAANNNNTTC 3 cut(s) 601, 661, 1590
MscI TGGCCA 1 cut(s) 473
MslI CAYNNNNRTG 3 cut(s) 596, 680, 1641
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 72
MspCI CTTAAG 2 cut(s) 838, 1547
MspI CCGG 2 cut(s) 1745, 1997
MspR9I CCNGG 4 cut(s) 1346, 1608, 1883, 1998
MunI CAATTG 2 cut(s) 186, 1492
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 3 cut(s) 1346, 1608, 1883
MvnI CGCG 1 cut(s) 1299
MwoI GCNNNNNNNGC 6 cut(s) 452, 1327, 1715, 2047, 2157, 2166
NciI CCSGG 1 cut(s) 1998
NcoI CCATGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 635
NdeII GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
NlaIV GGNNCC 3 cut(s) 344, 604, 1083
NmuCI GTSAC 1 cut(s) 1264
NsiI ATGCAT 2 cut(s) 281, 1450
PceI AGGCCT 2 cut(s) 169, 786
PctI GAATGC 1 cut(s) 1311
PdmI GAANNNNTTC 3 cut(s) 601, 661, 1590
PfeI GAWTC 3 cut(s) 662, 1569, 1889
PflMI CCANNNNNTGG 2 cut(s) 676, 1747
PfoI TCCNGGA 1 cut(s) 1606
PkrI GCNGC 3 cut(s) 235, 342, 457
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 2030
PpsI GAGTC 1 cut(s) 2030
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 1344, 1606, 1881
PspEI GGTNACC 1 cut(s) 1264
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 3 cut(s) 1344, 1606, 1881
PspN4I GGNNCC 3 cut(s) 344, 604, 1083
PspPI GGNCC 3 cut(s) 292, 772, 1994
PsuI RGATCY 4 cut(s) 200, 842, 1049, 2104
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 4 cut(s) 1423, 1677, 1728, 1939
RsaNI GTAC 4 cut(s) 1422, 1676, 1727, 1938
RseI CAYNNNNRTG 3 cut(s) 596, 680, 1641
SacI GAGCTC 1 cut(s) 366
SatI GCNGC 3 cut(s) 234, 341, 456
Sau3AI GATC 7 cut(s) 85, 200, 842, 994, 1049, 1894, 2104
Sau96I GGNCC 3 cut(s) 292, 772, 1994
SchI GAGTC 1 cut(s) 2031
ScrFI CCNGG 4 cut(s) 1346, 1608, 1883, 1998
SduI GDGCHC 2 cut(s) 366, 1740
SfaNI GCATC 5 cut(s) 1022, 1435, 1457, 1511, 1801
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 3 cut(s) 596, 680, 1641
SmlI CTYRAG 6 cut(s) 146, 808, 838, 1331, 1547, 1970
SmoI CTYRAG 6 cut(s) 146, 808, 838, 1331, 1547, 1970
SpeI ACTAGT 1 cut(s) 2153
SseBI AGGCCT 2 cut(s) 169, 786
SsiI CCGC 4 cut(s) 70, 340, 607, 2102
SspI AATATT 1 cut(s) 1618
SspMI CTAG 3 cut(s) 198, 1400, 2154
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 2 cut(s) 169, 786
StyD4I CCNGG 4 cut(s) 1344, 1606, 1881, 1996
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 5 cut(s) 938, 1394, 1691, 1958, 2055
TaiI ACGT 3 cut(s) 957, 1018, 1193
TaqI TCGA 5 cut(s) 366, 505, 819, 1315, 1818
TaqII GACCGA 1 cut(s) 153
TatI WGTACW 3 cut(s) 1421, 1675, 1726
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 3 cut(s) 662, 1569, 1889
TscAI CASTG 2 cut(s) 1434, 2152
TseFI GTSAC 1 cut(s) 1264
TseI GCWGC 2 cut(s) 233, 455
Tsp45I GTSAC 1 cut(s) 1264
TspGWI ACGGA 2 cut(s) 547, 2015
TspRI CASTG 2 cut(s) 1434, 2152
Van91I CCANNNNNTGG 2 cut(s) 676, 1747
Vha464I CTTAAG 2 cut(s) 838, 1547
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 8 cut(s) 117, 733, 853, 1241, 1351, 1453, 1769, 1874
XbaI TCTAGA 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 1643
XmiI GTMKAC 1 cut(s) 1396
XmnI GAANNNNTTC 3 cut(s) 601, 661, 1590
XspI CTAG 3 cut(s) 198, 1400, 2154
Zsp2I ATGCAT 2 cut(s) 281, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.