Rh6DG004900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000105
Physical Location & Seq
Forward (+)
536248 .. 541424
5177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG004900.1

Sequence Viewer

Length: 480 bp
ATGCCCGCCATCTGTTCGATGAAATGCCCAGAAGAAACCTCGTCACTTGGACTGCTCTCATTTCCGGGTACGCACAGCGGGGTCGATTTTCGTTTATTTGCTGCCATGTTGGTGCATTACCTCCCGAATGAGTTGGCATTTGCCAGCGTGCTAAGTTCATGTGACGATAGTGATGATGGTGGATATATATGGCCGGCAGGTTGGTGGCATAACAGTTGCAGTCAGCTTGAGTTCTTATTTGAAACAAAAGGGCCAGGTCTGAAGGTGAAGGAGTGTGGGGTACGTCTGATATATGAGCAAGATGTGCTAGAGTTGAACCAAACAATAACTCAATCAAGCAGTAGGATGTCTCCTCCATGTGATTATATATTGATTAATTTTGAGAATCGAGTTGAAGGGGAAACCATTCACCCAAAAAAAAAGTTGAAAGGGGAAACCAGTGGTACTGGTAGCAGAACATGCACCCTTGAAGAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

4.93

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 2 cut(s) 6, 78
AcoI YGGCCR 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 3 cut(s) 70, 282, 445
AgsI TTSAA 5 cut(s) 242, 316, 395, 427, 470
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 354
AoxI GGCC 2 cut(s) 191, 251
ApeKI GCWGC 1 cut(s) 101
AseI ATTAAT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 277, 401
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 17, 170
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 66, 255
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 66, 255
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 438, 451
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 438, 451
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 193, 253
BsiSI CCGG 2 cut(s) 65, 194
BsmAI GTCTC 1 cut(s) 354
BsnI GGCC 2 cut(s) 193, 253
BspACI CCGC 2 cut(s) 6, 78
BspANI GGCC 2 cut(s) 193, 253
BspMI ACCTGC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 2 cut(s) 438, 451
BssAI RCCGGY 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 215
BstAPI GCANNNNNTGC 2 cut(s) 304, 459
BstC8I GCNNGC 4 cut(s) 6, 145, 149, 195
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 304, 459
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 64, 253
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 193, 253
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 4 cut(s) 6, 145, 149, 195
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 69, 281, 444
CviAII CATG 4 cut(s) 106, 159, 357, 459
CviJI RGCY 3 cut(s) 193, 226, 253
CviKI_1 RGCY 3 cut(s) 193, 226, 253
CviQI GTAC 3 cut(s) 69, 281, 444
DdeI CTNAG 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 109, 162, 360, 462
FatI CATG 4 cut(s) 105, 158, 356, 458
FauI CCCGC 2 cut(s) 13, 71
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 193, 253
HapII CCGG 2 cut(s) 65, 194
Hin1II CATG 4 cut(s) 109, 162, 360, 462
HinfI GANTC 1 cut(s) 385
HpaII CCGG 2 cut(s) 65, 194
HphI GGTGA 2 cut(s) 277, 401
Hpy188I TCNGA 2 cut(s) 261, 288
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 256, 262, 389
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 115, 219, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 459
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 4 cut(s) 109, 162, 360, 462
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
LpnPI CCDG 9 cut(s) 42, 78, 157, 183, 207, 240, 267, 432, 451
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 42, 161
MboII GAAGA 1 cut(s) 44
MluCI AATT 1 cut(s) 376
MnlI CCTC 3 cut(s) 49, 131, 363
MroNI GCCGGC 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 2 cut(s) 65, 194
MspR9I CCNGG 2 cut(s) 66, 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 304, 459
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 4 cut(s) 109, 162, 360, 462
NmuCI GTSAC 2 cut(s) 42, 161
NspI RCATGY 1 cut(s) 462
PdiI GCCGGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspPI GGNCC 1 cut(s) 251
RsaI GTAC 3 cut(s) 70, 282, 445
RsaNI GTAC 3 cut(s) 69, 281, 444
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 66, 255
SetI ASST 7 cut(s) 41, 123, 202, 228, 259, 267, 286
SfcI CTRYAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 376
SsiI CCGC 2 cut(s) 6, 78
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 64, 253
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 286
TaqI TCGA 3 cut(s) 17, 84, 388
TasI AATT 1 cut(s) 376
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 42, 161
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 42, 161
TspDTI ATGAA 2 cut(s) 35, 147
TspRI CASTG 1 cut(s) 445
VspI ATTAAT 1 cut(s) 375
XceI RCATGY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.