RchiOBHm_Chr1g0322531

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000105
Physical Location & Seq
Reverse (-)
9882848 .. 9885299
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55252

Sequence Viewer

Length: 1977 bp
ATGGCATCAACCTCTTCTCGTCGTCAATGGAAATACGATGTGTTTCTAAACTTCAGGGGGAAAGATACCCGCAAATATTTTACCAGTAATCTGTATGCTGAATTAAATCAGAAAGGAATTCTCTCCTTTTGGGATGGGGCAGAGCTTGAGAAAGGGAAATCCATTTGGCCTGAACTTTTAGCTGCAATTGAGGACTCTAGATTTGCGATTGTCATTCTCTCAGAGAACTATGCTTCTTCTTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCGTGAAAGAGATGGGCCAACAAGTCCTGCCCGTCTTCTACAAGGTGGATCCTTCTGATGTGCGGCACCAAAGGGGAAGGTTTGAGCTCAAAAGGGACCCCGAAGTAGAAGTAAGGGCACATGAAGAAGTTTATGGGAATAATGAGGACAGACTAAATGCGTGGAGAGATGCTTTGACACAGGTGGCCAACCTTTCTGGCTGGGATTCCAAGAATTATCAACATGAATCAAGTTTAATTGACGAGATTGTTAATCATATACTAAAGAAGTCCGTGTATACATCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGGTTCTCGCATTGATGATTTATTAAGCAATTACATATATCCGCAGCTTGGTGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAGGTAAGACAACACTTGCTCGAGCTATCCATGATCAAATTTGTCAGGATTTTGATCGAATTTGCTTTCTTTCAAATGTTAGAGAAATGTGTAAAAACAATGGCCTAGTTTCTCTACAAGAAAAACTTCTTTCCAGAATCCTGATGGCAAAAGTTGAAAATATAGAGGATGTATACACAGGAGCTGCTATGATAGAAAGGCGGTTGTGTAGAAAAAAGGTGTTGGTTGTTATTGATGATGTGGATCAGTTGACACAATTAGAGAAATTGGCTGGAAGTCGCAACTGGTTTGGTTCAGGGACTAGAATTATCATAACCACCACAGATTTTCAGTTGTTAAAGGCACATGGTGTTGATGCTACGTACAAGGCTAATGGCTTAAACTGTGATGAAGCACTTCAACTTTTGAGTTTGAAGGCTTTTAAGAAATGTCCCCCACCAGAAGATTATTTGCATCTGTGCTACGATATTACAGGGTATGCTAAGGGGCTTCCCTTGGCTCTCGTGGTTTTAGGTTCTTTTCTATTTGGTAGAAGCGCTGATGAATGGGCAAGTGCAATAGATAGGCTAAAGAACACACCAGATAAACACATTATTGAGGTGCTTCGGATTAGTTTTGATGGACTGGATGAAAAAGACAAAGAAATATTCCTACATATCGCTTGCTTTTACAAGGGGAAGGATAAGGATCGTGTGACACAAATACTAGACTATTGCCAGCTAAACCCTGTCATTGGTTTGAGTGTTCTTGCTGATAGATCTCTCATAACTATCTCCAACAACGAACTATGGATGCATGATTTGCTACAAGAATTGGGCTGGGAAATTGTTCGTGAACAGTCTCCTAAAGAGCCAGGCAAACGTAGTAGATTATGGTCTCATGAAGACATCAACAATGTGCTGAAGAAAAATAAGGGAACAGATTCAATCCAAGGCATGATAATGGAGTTGACTAAATTACGAGTGGCTCATTGGAAGCCAGAAGCCTTTACAAATTTGTCTCAACTTGGTCTTCTCCATATTCGTAATGTGGACCTTCCCAAAGGCCTCACTTGTCTTTCTAGTTCCTTGAGACTCCTCGAATGGACTGGGTATCCCTTAAGATCTCTCCCAAAAATTTTTGAAGCAGATGAACTTATTGAACTTAACTTGTGCCACAGCAACATTAAACAGCTTTGGAAGGGAACAAAGGTATGGCTATTAGTTAATAGATTACTTGTTTATCTCTATGTGGCAAATTGTCTGTTCTGTGTGGTGGCTCACTGTTTTGATTTTATGAGCAGAATTTTGACAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

658

Amino Acids

75.24

Weight (kDa)

7.52

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 189 1.3e-54 TIR domain
TIR_2 PF13676 14 - 111 5e-14 TIR domain
NB-ARC PF00931 215 - 369 1.1e-19 NB-ARC domain
NACHT PF05729 219 - 315 7.6e-07 NACHT domain
WHD_ROQ1 PF23282 436 - 507 6e-22 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 605 - 623 1e-05 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AccI GTMKAC 2 cut(s) 554, 852
AciI CCGC 5 cut(s) 70, 340, 632, 673, 880
AclWI GGATC 6 cut(s) 320, 333, 655, 668, 930, 1374
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 6 cut(s) 117, 717, 738, 1672, 1794, 1962
AcuI CTGAAG 2 cut(s) 37, 1601
AdeI CACNNNGTG 1 cut(s) 1028
AfaI GTAC 1 cut(s) 1043
AfeI AGCGCT 1 cut(s) 1216
AfiI CCNNNNNNNGG 2 cut(s) 638, 1412
AflII CTTAAG 1 cut(s) 1777
AgsI TTSAA 9 cut(s) 275, 564, 753, 836, 1079, 1093, 1605, 1802, 1820
AjnI CCWGG 1 cut(s) 1531
AluBI AGCT 8 cut(s) 145, 182, 364, 637, 704, 863, 1399, 1852
AluI AGCT 8 cut(s) 145, 182, 364, 637, 704, 863, 1399, 1852
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 4 cut(s) 1524, 1560, 1683, 1744
AlwI GGATC 6 cut(s) 320, 333, 655, 668, 930, 1374
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 699
Aor51HI AGCGCT 1 cut(s) 1216
AoxI GGCC 5 cut(s) 167, 292, 462, 781, 1723
ApeKI GCWGC 3 cut(s) 182, 634, 863
ApoI RAATTY 6 cut(s) 117, 717, 738, 1672, 1794, 1962
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 5 cut(s) 592, 804, 1074, 1506, 1600
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 3 cut(s) 292, 373, 1711
AvaI CYCGRG 1 cut(s) 699
AvaII GGWCC 2 cut(s) 373, 1711
BaeGI GKGCMC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 2 cut(s) 325, 660
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 1 cut(s) 1181
BbsI GAAGAC 3 cut(s) 304, 1569, 1682
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 169, 646, 850
BccI CCATC 4 cut(s) 128, 283, 817, 1292
BciT130I CCWGG 1 cut(s) 1533
BciVI GTATCC 1 cut(s) 1782
BclI TGATCA 1 cut(s) 712
BcoDI GTCTC 4 cut(s) 1524, 1560, 1683, 1744
BfaI CTAG 5 cut(s) 198, 785, 981, 1385, 1740
BfoI RGCGCY 1 cut(s) 1218
BfrI CTTAAG 1 cut(s) 1777
BfuI GTATCC 1 cut(s) 1782
BglII AGATCT 2 cut(s) 1436, 1781
BisI GCNGC 4 cut(s) 183, 341, 635, 864
BlsI GCNGC 4 cut(s) 184, 342, 636, 865
Bme1390I CCNGG 1 cut(s) 1533
Bme18I GGWCC 2 cut(s) 373, 1711
BmeT110I CYCGRG 1 cut(s) 699
BmgT120I GGNCC 3 cut(s) 292, 373, 1711
BmiI GGNNCC 5 cut(s) 327, 344, 374, 375, 662
BmrFI CCNGG 1 cut(s) 1533
BmrI ACTGGG 1 cut(s) 1776
BmsI GCATC 5 cut(s) 14, 436, 1024, 1141, 1461
BmuI ACTGGG 1 cut(s) 1776
BpiI GAAGAC 3 cut(s) 304, 1569, 1682
Bpu10I CCTNAGC 1 cut(s) 1161
BpuEI CTTGAG 2 cut(s) 167, 1768
BsaAI YACGTR 1 cut(s) 1041
BsaBI GATNNNNATC 3 cut(s) 732, 921, 1365
BsaI GGTCTC 1 cut(s) 1560
BsaJI CCNNGG 3 cut(s) 664, 1173, 1609
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 1412
Bse1I ACTGG 4 cut(s) 84, 968, 1308, 1771
Bse8I GATNNNNATC 3 cut(s) 732, 921, 1365
BseBI CCWGG 1 cut(s) 1533
BseDI CCNNGG 3 cut(s) 664, 1173, 1609
BseGI GGATG 5 cut(s) 139, 259, 853, 1312, 1476
BseJI GATNNNNATC 3 cut(s) 732, 921, 1365
BseLI CCNNNNNNNGG 2 cut(s) 638, 1412
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 4 cut(s) 84, 968, 1308, 1771
BseRI GAGGAG 1 cut(s) 1745
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 169, 646, 850
BseYI CCCAGC 2 cut(s) 477, 1497
BshFI GGCC 5 cut(s) 169, 294, 464, 783, 1725
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 699
BslFI GGGAC 3 cut(s) 386, 991, 1095
BslI CCNNNNNNNGG 2 cut(s) 638, 1412
BsmAI GTCTC 4 cut(s) 1524, 1560, 1683, 1744
BsmFI GGGAC 3 cut(s) 386, 991, 1095
BsnI GGCC 5 cut(s) 169, 294, 464, 783, 1725
Bso31I GGTCTC 1 cut(s) 1560
BsoBI CYCGRG 1 cut(s) 699
Bsp1286I GDGCHC 2 cut(s) 366, 397
Bsp143I GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
Bsp19I CCATGG 1 cut(s) 664
BspACI CCGC 5 cut(s) 70, 340, 632, 673, 880
BspANI GGCC 5 cut(s) 169, 294, 464, 783, 1725
BspCNI CTCAG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 1558
BspLI GGNNCC 5 cut(s) 327, 344, 374, 375, 662
BspPI GGATC 6 cut(s) 320, 333, 655, 668, 930, 1374
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 1777
BspTNI GGTCTC 1 cut(s) 1560
BsrI ACTGG 4 cut(s) 84, 968, 1308, 1771
BssECI CCNNGG 3 cut(s) 664, 1173, 1609
BssMI GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
BssNAI GTATAC 2 cut(s) 555, 853
BssSI CACGAG 1 cut(s) 1181
BssT1I CCWWGG 3 cut(s) 664, 1173, 1609
Bst1107I GTATAC 2 cut(s) 555, 853
Bst2BI CACGAG 1 cut(s) 1181
Bst2UI CCWGG 1 cut(s) 1533
Bst4CI ACNGT 3 cut(s) 1064, 1518, 1943
Bst6I CTCTTC 1 cut(s) 19
BstAFI CTTAAG 1 cut(s) 1777
BstAPI GCANNNNNTGC 1 cut(s) 1480
BstBAI YACGTR 1 cut(s) 1041
BstC8I GCNNGC 3 cut(s) 671, 1342, 1397
BstDEI CTNAG 2 cut(s) 220, 1161
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 5 cut(s) 139, 259, 853, 1312, 1476
BstH2I RGCGCY 1 cut(s) 1218
BstHHI GCGC 1 cut(s) 1217
BstKTI GATC 8 cut(s) 328, 663, 715, 736, 925, 1369, 1439, 1784
BstMAI GTCTC 4 cut(s) 1524, 1560, 1683, 1744
BstMBI GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
BstMWI GCNNNNNNNGC 2 cut(s) 675, 1480
BstNI CCWGG 1 cut(s) 1533
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 1531
BstSLI GKGCMC 1 cut(s) 397
BstSNI TACGTA 1 cut(s) 1041
BstV1I GCAGC 3 cut(s) 169, 646, 850
BstV2I GAAGAC 3 cut(s) 304, 1569, 1682
BstX2I RGATCY 4 cut(s) 325, 660, 1436, 1781
BstYI RGATCY 4 cut(s) 325, 660, 1436, 1781
BstZ17I GTATAC 2 cut(s) 555, 853
BsuI GTATCC 1 cut(s) 1782
BsuRI GGCC 5 cut(s) 169, 294, 464, 783, 1725
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 5 cut(s) 139, 259, 853, 1312, 1476
BtsIMutI CAGTG 1 cut(s) 1939
Cac8I GCNNGC 3 cut(s) 671, 1342, 1397
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 1 cut(s) 1558
CfoI GCGC 1 cut(s) 1217
Cfr13I GGNCC 3 cut(s) 292, 373, 1711
Csp6I GTAC 1 cut(s) 1042
CviQI GTAC 1 cut(s) 1042
DdeI CTNAG 2 cut(s) 220, 1161
DpnI GATC 8 cut(s) 327, 662, 714, 735, 924, 1368, 1438, 1783
DpnII GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
DraIII CACNNNGTG 1 cut(s) 1028
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 364
Eco105I TACGTA 1 cut(s) 1041
Eco130I CCWWGG 3 cut(s) 664, 1173, 1609
Eco147I AGGCCT 1 cut(s) 1725
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 1560
Eco47I GGWCC 2 cut(s) 373, 1711
Eco47III AGCGCT 1 cut(s) 1216
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 2 cut(s) 37, 1601
Eco88I CYCGRG 1 cut(s) 699
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 1531
EcoT14I CCWWGG 3 cut(s) 664, 1173, 1609
EcoT22I ATGCAT 1 cut(s) 1476
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 3 cut(s) 664, 1173, 1609
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 3 cut(s) 386, 991, 1095
FauI CCCGC 2 cut(s) 77, 666
FbaI TGATCA 1 cut(s) 712
FblI GTMKAC 2 cut(s) 554, 852
Fnu4HI GCNGC 4 cut(s) 183, 341, 635, 864
FokI GGATG 5 cut(s) 146, 266, 860, 1319, 1483
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 183, 341, 635, 864
FspBI CTAG 5 cut(s) 198, 785, 981, 1385, 1740
GlaI GCGC 1 cut(s) 1216
GluI GCNGC 4 cut(s) 183, 341, 635, 864
GsaI CCCAGC 2 cut(s) 481, 1501
HaeII RGCGCY 1 cut(s) 1218
HaeIII GGCC 5 cut(s) 169, 294, 464, 783, 1725
HhaI GCGC 1 cut(s) 1217
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HincII GTYRAC 3 cut(s) 571, 930, 1629
HindII GTYRAC 3 cut(s) 571, 930, 1629
HinfI GANTC 6 cut(s) 194, 482, 503, 816, 1601, 1752
Hpy166II GTNNAC 7 cut(s) 555, 571, 853, 930, 1514, 1629, 1711
Hpy188I TCNGA 4 cut(s) 111, 223, 334, 1287
Hpy188III TCNNGA 7 cut(s) 198, 265, 725, 813, 820, 1511, 1559
Hpy8I GTNNAC 7 cut(s) 555, 571, 853, 930, 1514, 1629, 1711
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 6 cut(s) 339, 348, 1087, 1351, 1724, 1852
HpyCH4III ACNGT 3 cut(s) 1064, 1518, 1943
HpyCH4IV ACGT 2 cut(s) 1040, 1540
HpyCH4V TGCA 4 cut(s) 185, 1132, 1235, 1474
HpyF10VI GCNNNNNNNGC 2 cut(s) 675, 1480
HpyF3I CTNAG 2 cut(s) 220, 1161
HpySE526I ACGT 2 cut(s) 1040, 1540
HspAI GCGC 1 cut(s) 1215
KflI GGGWCCC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
LmnI GCTCC 1 cut(s) 860
Lsp1109I GCAGC 3 cut(s) 169, 646, 850
LweI GCATC 5 cut(s) 14, 436, 1024, 1141, 1461
MaeI CTAG 5 cut(s) 198, 785, 981, 1385, 1740
MaeII ACGT 2 cut(s) 1040, 1540
MaeIII GTNAC 1 cut(s) 1372
MalI GATC 8 cut(s) 327, 662, 714, 735, 924, 1368, 1438, 1783
MboI GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 4 cut(s) 325, 660, 1436, 1781
MhlI GDGCHC 2 cut(s) 366, 397
MlsI TGGCCA 1 cut(s) 464
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 188, 1746
MmeI TCCRAC 1 cut(s) 1479
MnlI CCTC 7 cut(s) 22, 184, 415, 838, 1270, 1736, 1766
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 1 cut(s) 1476
MroXI GAANNNNTTC 5 cut(s) 592, 804, 1074, 1506, 1600
MscI TGGCCA 1 cut(s) 464
MslI CAYNNNNRTG 2 cut(s) 587, 1619
Msp20I TGGCCA 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 1777
MspR9I CCNGG 1 cut(s) 1533
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 1533
MwoI GCNNNNNNNGC 2 cut(s) 675, 1480
NcoI CCATGG 1 cut(s) 664
NdeII GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
NlaIV GGNNCC 5 cut(s) 327, 344, 374, 375, 662
NmuCI GTSAC 1 cut(s) 1372
NsiI ATGCAT 1 cut(s) 1476
NspI RCATGY 1 cut(s) 673
PaeI GCATGC 1 cut(s) 673
PaeR7I CTCGAG 1 cut(s) 699
PagI TCATGA 1 cut(s) 1558
PceI AGGCCT 1 cut(s) 1725
PdmI GAANNNNTTC 5 cut(s) 592, 804, 1074, 1506, 1600
PfeI GAWTC 4 cut(s) 482, 503, 816, 1601
PkrI GCNGC 4 cut(s) 184, 342, 636, 865
PleI GAGTC 2 cut(s) 188, 1746
PpsI GAGTC 2 cut(s) 188, 1746
Ppu21I YACGTR 1 cut(s) 1041
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 1531
PspFI CCCAGC 2 cut(s) 477, 1497
PspGI CCWGG 1 cut(s) 1531
PspN4I GGNNCC 5 cut(s) 327, 344, 374, 375, 662
PspPI GGNCC 3 cut(s) 292, 373, 1711
PspPPI RGGWCCY 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 699
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 4 cut(s) 325, 660, 1436, 1781
RsaI GTAC 1 cut(s) 1043
RsaNI GTAC 1 cut(s) 1042
RseI CAYNNNNRTG 2 cut(s) 587, 1619
SacI GAGCTC 1 cut(s) 366
SatI GCNGC 4 cut(s) 183, 341, 635, 864
Sau3AI GATC 8 cut(s) 325, 660, 712, 733, 922, 1366, 1436, 1781
Sau96I GGNCC 3 cut(s) 292, 373, 1711
SchI GAGTC 2 cut(s) 188, 1746
ScrFI CCNGG 1 cut(s) 1533
SduI GDGCHC 2 cut(s) 366, 397
SfaNI GCATC 5 cut(s) 14, 436, 1024, 1141, 1461
Sfr274I CTCGAG 1 cut(s) 699
SinI GGWCC 2 cut(s) 373, 1711
SlaI CTCGAG 1 cut(s) 699
SmiMI CAYNNNNRTG 2 cut(s) 587, 1619
SmlI CTYRAG 4 cut(s) 146, 699, 1747, 1777
SmoI CTYRAG 4 cut(s) 146, 699, 1747, 1777
SnaBI TACGTA 1 cut(s) 1041
SphI GCATGC 1 cut(s) 673
SseBI AGGCCT 1 cut(s) 1725
SsiI CCGC 5 cut(s) 70, 340, 632, 673, 880
SspI AATATT 2 cut(s) 77, 1326
SspMI CTAG 5 cut(s) 198, 785, 981, 1385, 1740
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 1725
StyD4I CCNGG 1 cut(s) 1531
StyI CCWWGG 3 cut(s) 664, 1173, 1609
TaaI ACNGT 3 cut(s) 1064, 1518, 1943
TaiI ACGT 2 cut(s) 1043, 1543
TaqI TCGA 3 cut(s) 700, 736, 1758
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 4 cut(s) 482, 503, 816, 1601
TscAI CASTG 1 cut(s) 1946
TseFI GTSAC 1 cut(s) 1372
TseI GCWGC 3 cut(s) 182, 634, 863
Tsp45I GTSAC 1 cut(s) 1372
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 1 cut(s) 1946
Vha464I CTTAAG 1 cut(s) 1777
VpaK11BI GGWCC 2 cut(s) 373, 1711
XapI RAATTY 6 cut(s) 117, 717, 738, 1672, 1794, 1962
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XhoI CTCGAG 1 cut(s) 699
XmiI GTMKAC 2 cut(s) 554, 852
XmnI GAANNNNTTC 5 cut(s) 592, 804, 1074, 1506, 1600
XspI CTAG 5 cut(s) 198, 785, 981, 1385, 1740
Zsp2I ATGCAT 1 cut(s) 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.