TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 99 - 170 | 3.6e-23 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 213 |
| AclWI | GGATC | 1 cut(s) | 363 |
| AcoI | YGGCCR | 1 cut(s) | 515 |
| AcsI | RAATTY | 1 cut(s) | 49 |
| AcuI | CTGAAG | 1 cut(s) | 257 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 213, 401 |
| AgsI | TTSAA | 3 cut(s) | 68, 76, 91 |
| AjnI | CCWGG | 1 cut(s) | 517 |
| AluBI | AGCT | 2 cut(s) | 62, 388 |
| AluI | AGCT | 2 cut(s) | 62, 388 |
| Alw26I | GTCTC | 1 cut(s) | 546 |
| AlwI | GGATC | 1 cut(s) | 363 |
| AoxI | GGCC | 1 cut(s) | 515 |
| ApoI | RAATTY | 1 cut(s) | 49 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuC2I | CCSGG | 1 cut(s) | 43 |
| AsuHPI | GGTGA | 1 cut(s) | 68 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 555 |
| BccI | CCATC | 1 cut(s) | 281 |
| BciT130I | CCWGG | 1 cut(s) | 519 |
| BcnI | CCSGG | 1 cut(s) | 43 |
| BcoDI | GTCTC | 1 cut(s) | 546 |
| BfaI | CTAG | 2 cut(s) | 293, 374 |
| BglII | AGATCT | 1 cut(s) | 425 |
| Bme1390I | CCNGG | 2 cut(s) | 43, 519 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 2 cut(s) | 43, 519 |
| BmrI | ACTGGG | 1 cut(s) | 491 |
| BmsI | GCATC | 2 cut(s) | 13, 450 |
| BmuI | ACTGGG | 1 cut(s) | 491 |
| BpiI | GAAGAC | 1 cut(s) | 555 |
| Bpu10I | CCTNAGC | 1 cut(s) | 150 |
| BpuMI | CCSGG | 1 cut(s) | 43 |
| Bsa29I | ATCGAT | 1 cut(s) | 264 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaI | GGTCTC | 1 cut(s) | 546 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 207 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 213, 401 |
| Bse1I | ACTGG | 1 cut(s) | 486 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 1 cut(s) | 519 |
| BseCI | ATCGAT | 1 cut(s) | 264 |
| BseDI | CCNNGG | 2 cut(s) | 162, 207 |
| BseGI | GGATG | 1 cut(s) | 552 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 213, 401 |
| BseMII | CTCAG | 1 cut(s) | 164 |
| BseNI | ACTGG | 1 cut(s) | 486 |
| BseYI | CCCAGC | 1 cut(s) | 486 |
| BshFI | GGCC | 1 cut(s) | 517 |
| BshVI | ATCGAT | 1 cut(s) | 264 |
| BsiSI | CCGG | 1 cut(s) | 42 |
| BslFI | GGGAC | 1 cut(s) | 86 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 213, 401 |
| BsmAI | GTCTC | 1 cut(s) | 546 |
| BsmFI | GGGAC | 1 cut(s) | 86 |
| BsnI | GGCC | 1 cut(s) | 517 |
| Bso31I | GGTCTC | 1 cut(s) | 546 |
| Bsp143I | GATC | 3 cut(s) | 355, 425, 511 |
| BspANI | GGCC | 1 cut(s) | 517 |
| BspCNI | CTCAG | 1 cut(s) | 163 |
| BspDI | ATCGAT | 1 cut(s) | 264 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspPI | GGATC | 1 cut(s) | 363 |
| BspTNI | GGTCTC | 1 cut(s) | 546 |
| BsrI | ACTGG | 1 cut(s) | 486 |
| BssECI | CCNNGG | 2 cut(s) | 162, 207 |
| BssMI | GATC | 3 cut(s) | 355, 425, 511 |
| BssT1I | CCWWGG | 2 cut(s) | 162, 207 |
| Bst2UI | CCWGG | 1 cut(s) | 519 |
| Bst4CI | ACNGT | 1 cut(s) | 507 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 1 cut(s) | 386 |
| BstDEI | CTNAG | 1 cut(s) | 150 |
| BstF5I | GGATG | 1 cut(s) | 552 |
| BstKTI | GATC | 3 cut(s) | 358, 428, 514 |
| BstMAI | GTCTC | 1 cut(s) | 546 |
| BstMBI | GATC | 3 cut(s) | 355, 425, 511 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 469 |
| BstNI | CCWGG | 1 cut(s) | 519 |
| BstSCI | CCNGG | 2 cut(s) | 41, 517 |
| BstV2I | GAAGAC | 1 cut(s) | 555 |
| BstX2I | RGATCY | 1 cut(s) | 425 |
| BstYI | RGATCY | 1 cut(s) | 425 |
| Bsu15I | ATCGAT | 1 cut(s) | 264 |
| BsuRI | GGCC | 1 cut(s) | 517 |
| BsuTUI | ATCGAT | 1 cut(s) | 264 |
| BtsCI | GGATG | 1 cut(s) | 552 |
| Cac8I | GCNNGC | 1 cut(s) | 386 |
| CciI | TCATGA | 1 cut(s) | 544 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| ClaI | ATCGAT | 1 cut(s) | 264 |
| CseI | GACGC | 1 cut(s) | 88 |
| CviAII | CATG | 3 cut(s) | 14, 464, 545 |
| CviJI | RGCY | 9 cut(s) | 38, 62, 86, 157, 167, 235, 388, 486, 517 |
| CviKI_1 | RGCY | 9 cut(s) | 38, 62, 86, 157, 167, 235, 388, 486, 517 |
| DdeI | CTNAG | 1 cut(s) | 150 |
| DpnI | GATC | 3 cut(s) | 357, 427, 513 |
| DpnII | GATC | 3 cut(s) | 355, 425, 511 |
| EaeI | YGGCCR | 1 cut(s) | 515 |
| Eco130I | CCWWGG | 2 cut(s) | 162, 207 |
| Eco31I | GGTCTC | 1 cut(s) | 546 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 257 |
| EcoRII | CCWGG | 1 cut(s) | 517 |
| EcoT14I | CCWWGG | 2 cut(s) | 162, 207 |
| EcoT22I | ATGCAT | 1 cut(s) | 465 |
| ErhI | CCWWGG | 2 cut(s) | 162, 207 |
| FaeI | CATG | 3 cut(s) | 17, 467, 548 |
| FaiI | YATR | 8 cut(s) | 15, 31, 147, 252, 324, 465, 538, 546 |
| FaqI | GGGAC | 1 cut(s) | 86 |
| FatI | CATG | 3 cut(s) | 13, 463, 544 |
| FokI | GGATG | 1 cut(s) | 539 |
| FspBI | CTAG | 2 cut(s) | 293, 374 |
| GsaI | CCCAGC | 1 cut(s) | 490 |
| HaeIII | GGCC | 1 cut(s) | 517 |
| HapII | CCGG | 1 cut(s) | 42 |
| HgaI | GACGC | 1 cut(s) | 88 |
| Hin1II | CATG | 3 cut(s) | 17, 467, 548 |
| HpaII | CCGG | 1 cut(s) | 42 |
| HphI | GGTGA | 1 cut(s) | 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 503 |
| Hpy188I | TCNGA | 2 cut(s) | 276, 511 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 73, 91, 545, 556 |
| Hpy8I | GTNNAC | 1 cut(s) | 503 |
| HpyAV | CCTTC | 2 cut(s) | 212, 340 |
| HpyCH4III | ACNGT | 1 cut(s) | 507 |
| HpyCH4IV | ACGT | 1 cut(s) | 526 |
| HpyCH4V | TGCA | 3 cut(s) | 129, 224, 463 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 469 |
| HpyF3I | CTNAG | 1 cut(s) | 150 |
| HpySE526I | ACGT | 1 cut(s) | 526 |
| Hsp92II | CATG | 3 cut(s) | 17, 467, 548 |
| Kzo9I | GATC | 3 cut(s) | 355, 425, 511 |
| LweI | GCATC | 2 cut(s) | 13, 450 |
| MaeI | CTAG | 2 cut(s) | 293, 374 |
| MaeII | ACGT | 1 cut(s) | 526 |
| MalI | GATC | 3 cut(s) | 357, 427, 513 |
| MboI | GATC | 3 cut(s) | 355, 425, 511 |
| MboII | GAAGA | 2 cut(s) | 122, 560 |
| MflI | RGATCY | 1 cut(s) | 425 |
| MluCI | AATT | 1 cut(s) | 49 |
| MmeI | TCCRAC | 1 cut(s) | 468 |
| MnlI | CCTC | 1 cut(s) | 225 |
| Mph1103I | ATGCAT | 1 cut(s) | 465 |
| MseI | TTAA | 7 cut(s) | 5, 47, 80, 140, 227, 407, 566 |
| MspI | CCGG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 2 cut(s) | 43, 519 |
| MvaI | CCWGG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 469 |
| NciI | CCSGG | 1 cut(s) | 43 |
| NdeII | GATC | 3 cut(s) | 355, 425, 511 |
| NlaIII | CATG | 3 cut(s) | 17, 467, 548 |
| NsiI | ATGCAT | 1 cut(s) | 465 |
| PagI | TCATGA | 1 cut(s) | 544 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 213 |
| Psp6I | CCWGG | 1 cut(s) | 517 |
| PspFI | CCCAGC | 1 cut(s) | 486 |
| PspGI | CCWGG | 1 cut(s) | 517 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PsuI | RGATCY | 1 cut(s) | 425 |
| SaqAI | TTAA | 7 cut(s) | 5, 47, 80, 140, 227, 407, 566 |
| Sau3AI | GATC | 3 cut(s) | 355, 425, 511 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 43, 519 |
| SetI | ASST | 8 cut(s) | 64, 126, 135, 146, 184, 223, 390, 529 |
| SfaNI | GCATC | 2 cut(s) | 13, 450 |
| SinI | GGWCC | 1 cut(s) | 121 |
| Sse9I | AATT | 1 cut(s) | 49 |
| SspMI | CTAG | 2 cut(s) | 293, 374 |
| StyD4I | CCNGG | 2 cut(s) | 41, 517 |
| StyI | CCWWGG | 2 cut(s) | 162, 207 |
| TaaI | ACNGT | 1 cut(s) | 507 |
| TaiI | ACGT | 1 cut(s) | 529 |
| TaqI | TCGA | 2 cut(s) | 264, 458 |
| TasI | AATT | 1 cut(s) | 49 |
| Tru1I | TTAA | 7 cut(s) | 5, 47, 80, 140, 227, 407, 566 |
| Tru9I | TTAA | 7 cut(s) | 5, 47, 80, 140, 227, 407, 566 |
| TspDTI | ATGAA | 1 cut(s) | 561 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 213 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XapI | RAATTY | 1 cut(s) | 49 |
| XspI | CTAG | 2 cut(s) | 293, 374 |
| Zsp2I | ATGCAT | 1 cut(s) | 465 |