Rroxscaffold_4G00326830

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000105
Physical Location & Seq
Forward (+)
59054793 .. 59059069
4277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326830.1

Sequence Viewer

Length: 1878 bp
ATGGAAATACGATGTGTTTCTAAGTTTCAGGGGTTAGATAACCGCTATATGTTTACCGGTGATCTGTATGCTGCACTAAATCAGAAAGGAATTCTCACCTTTATGGATGACGCAGAGCTTGAGAAAGGAAAATCCATTCGGCCTGAACTTTTAGCTGCAATTGAGGACTCCAGATTTGCGATTGTCGTTCTCTCATGGAGATATGCTCGTTCGTCATGGTGCTTGGATGAACTCGTCAAAATTATTCAATGCATGAAAGAGATGGGCCAACAAGTCCTCCCCGTCTTCTACTGGGTGGATCCTTCTGATGTGCGGCACCAAAGGGGATTTTTTGAGCTCAAATGGGAACACCAAGTAGATGTGGAAGTAAGGGAACATGAAGAAGTTTATGGGAAGACTGAGGACAGACTAAATTCCTGGAGAGCTGCTTTGACACAGGTCGCCAATCTTTCTGGCTGGCATGTCAAGAATTATGGACCTCAATCAACTATAATTGAGGAAATTGTTAATCATATACTAAAGAAGTCCGTGTATACATCTTCAAGTATTGACAAGGGCTTCATAGGAATGGATTCCCGCATTCATGATCTATTAAGCAATTACATATGTCCACAGCTTGTTGGGGGAACAGATTCAATCCAAGGCTTGGTAATGGAGTTGACTAAATTACAAGTGGCTCATTGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTAGTCTTCTCCATATTCGTAATGTGGACCTTCCCGAAGGCCTCACTTGTCTTTCTAATTCCTTGAGACTCCTTGAATGGACTGGGTATCCCTTAAGATCTCTCCCACAAAACTTTGAAGCAGATGAACTTATTGAACTTAACTTGTGCCACAGCAACATTGAACAGCTTTGGAAGGGAACAAAGGAAACTGATGTGAATAGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGGAACAATTTTGTTCGTCTTCCTTCAGGCATTGGATTGCTTTCTAAGCTTGAGAACTTTAACTTGGAGAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTATACTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATATTTGTTTGATGCATCAAATTTGAACAGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCAATCTAAACAGCAATCAAGGATGCAATAACATAGCATTCGAAATGCTGAAGGCATTCATGTATCAGGGAATCTCTAATAGCAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTCTTGAGTGGTTCAGCCATCAGAGTGTTGGGTGTTCTGTAAGTGTATCTCTACCTGCACATTGGAATAACAGTCGGATATTGGGATTTGCTTTGTGTGCTGTTTTTGTGCTCCATGAGCACCATCAGGTGGATAAGCTTTATATAGATGAATTCAAGACTTTTAATGCAACACATCATCTAGTATGTTGCCTGAATCTTGATGGAAGAGAATTGGAAGTATATGGCAGACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCAAGGTTAAGTCAGATCACCTGTGGCTATTCTATGTATCTCGTGATAAATACTTTGGTACAGAGCGGTGGCATAACAGTTGCAGTCAGTTTGAGTTCTTATTTAAAACCAGAGGGCCAGGTCTGAAGGTGAAGGAGTGTGGAGTCCGTCTGATATATGAGCAAGATGTGCAAAAGTTGAACAAAACAACCACTCAATCAAGTAGTGGGATGTCTCCTTACGAGGATATATTGATTAGTTTTGACATTCCAGTTGCAGGGGAAACCAGTGGCACTGGTAGCAGAACTTGCACGCTTGAAGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

625

Amino Acids

71.55

Weight (kDa)

5.75

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 7 - 182 3.9e-45 TIR domain
TIR_2 PF13676 18 - 101 1.5e-11 TIR domain
LRR_3 PF07725 282 - 300 1.6e-06 Leucine Rich Repeat
C-JID PF20160 432 - 581 2.7e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1876
Acc36I ACCTGC 1 cut(s) 1372
AccB1I GGYRCC 1 cut(s) 315
AccB7I CCANNNNNTGG 2 cut(s) 646, 1438
AccBSI CCGCTC 1 cut(s) 1636
AccI GTMKAC 2 cut(s) 533, 1087
AciI CCGC 4 cut(s) 43, 313, 577, 1636
AclWI GGATC 2 cut(s) 293, 306
AcsI RAATTY 7 cut(s) 90, 412, 703, 932, 1144, 1460, 1565
AcuI CTGAAG 3 cut(s) 981, 1259, 1715
AfaI GTAC 2 cut(s) 1114, 1630
AfiI CCNNNNNNNGG 3 cut(s) 646, 1438, 1826
AflII CTTAAG 1 cut(s) 808
AgeI ACCGGT 1 cut(s) 56
AjnI CCWGG 3 cut(s) 416, 1297, 1687
AjuI GAANNNNNNNTTGG 2 cut(s) 1019, 1051
AluBI AGCT 8 cut(s) 118, 155, 337, 425, 616, 883, 1021, 1447
AluI AGCT 8 cut(s) 118, 155, 337, 425, 616, 883, 1021, 1447
Alw21I GWGCWC 3 cut(s) 339, 1422, 1431
Alw26I GTCTC 4 cut(s) 714, 775, 1045, 1788
AlwI GGATC 2 cut(s) 293, 306
AoxI GGCC 4 cut(s) 140, 265, 754, 1685
ApeKI GCWGC 3 cut(s) 71, 155, 425
ApoI RAATTY 7 cut(s) 90, 412, 703, 932, 1144, 1460, 1565
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AsiGI ACCGGT 1 cut(s) 56
Asp700I GAANNNNTTC 4 cut(s) 571, 631, 1244, 1281
AspS9I GGNCC 4 cut(s) 265, 476, 742, 1685
AsuHPI GGTGA 5 cut(s) 71, 88, 967, 1580, 1711
AsuII TTCGAA 1 cut(s) 1230
AvaII GGWCC 2 cut(s) 476, 742
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 1611
BbsI GAAGAC 4 cut(s) 277, 401, 713, 983
Bbv12I GWGCWC 3 cut(s) 339, 1422, 1431
BbvI GCAGC 3 cut(s) 58, 142, 412
BccI CCATC 6 cut(s) 256, 1084, 1100, 1335, 1440, 1505
BciT130I CCWGG 3 cut(s) 418, 1299, 1689
BciVI GTATCC 1 cut(s) 813
BcoDI GTCTC 4 cut(s) 714, 775, 1045, 1788
BfaI CTAG 2 cut(s) 1091, 1490
BfrI CTTAAG 1 cut(s) 808
BfuAI ACCTGC 1 cut(s) 1372
BfuI GTATCC 1 cut(s) 813
BglII AGATCT 1 cut(s) 812
BisI GCNGC 4 cut(s) 72, 156, 314, 426
BlsI GCNGC 4 cut(s) 73, 157, 315, 427
Bme1390I CCNGG 3 cut(s) 418, 1299, 1689
Bme18I GGWCC 2 cut(s) 476, 742
BmgT120I GGNCC 4 cut(s) 265, 476, 742, 1685
BmiI GGNNCC 2 cut(s) 300, 317
BmrFI CCNGG 3 cut(s) 418, 1299, 1689
BmrI ACTGGG 2 cut(s) 301, 807
BmsI GCATC 3 cut(s) 1126, 1148, 1202
BmuI ACTGGG 2 cut(s) 301, 807
BoxI GACNNNNGTC 1 cut(s) 437
BpiI GAAGAC 4 cut(s) 277, 401, 713, 983
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpmI CTGGAG 2 cut(s) 154, 439
Bpu14I TTCGAA 1 cut(s) 1230
BpuEI CTTGAG 4 cut(s) 140, 799, 1043, 1334
BsaJI CCNNGG 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 646, 1438, 1826
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 5 cut(s) 296, 802, 1820, 1836, 1849
BseBI CCWGG 3 cut(s) 418, 1299, 1689
BseDI CCNNGG 1 cut(s) 640
BseGI GGATG 4 cut(s) 112, 232, 1217, 1785
BseLI CCNNNNNNNGG 3 cut(s) 646, 1438, 1826
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 5 cut(s) 296, 802, 1820, 1836, 1849
BseXI GCAGC 3 cut(s) 58, 142, 412
BsgI GTGCAG 2 cut(s) 57, 1350
BshFI GGCC 4 cut(s) 142, 267, 756, 1687
BshNI GGYRCC 1 cut(s) 315
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 3 cut(s) 339, 1422, 1431
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 646, 1438, 1826
BsmAI GTCTC 4 cut(s) 714, 775, 1045, 1788
BsmI GAATGC 3 cut(s) 579, 1226, 1244
BsnI GGCC 4 cut(s) 142, 267, 756, 1687
Bsp119I TTCGAA 1 cut(s) 1230
Bsp1286I GDGCHC 3 cut(s) 339, 1422, 1431
Bsp143I GATC 5 cut(s) 61, 298, 586, 812, 1585
BspACI CCGC 4 cut(s) 43, 313, 577, 1636
BspANI GGCC 4 cut(s) 142, 267, 756, 1687
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 300, 317
BspMI ACCTGC 1 cut(s) 1372
BspPI GGATC 2 cut(s) 293, 306
BspT104I TTCGAA 1 cut(s) 1230
BspT107I GGYRCC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 808
BsrBI CCGCTC 1 cut(s) 1636
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 5 cut(s) 296, 802, 1820, 1836, 1849
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 640
BssMI GATC 5 cut(s) 61, 298, 586, 812, 1585
BssNAI GTATAC 2 cut(s) 534, 1088
BssSI CACGAG 1 cut(s) 1611
BssT1I CCWWGG 1 cut(s) 640
Bst1107I GTATAC 2 cut(s) 534, 1088
Bst2BI CACGAG 1 cut(s) 1611
Bst2UI CCWGG 3 cut(s) 418, 1299, 1689
Bst4CI ACNGT 2 cut(s) 1382, 1649
Bst6I CTCTTC 1 cut(s) 1510
BstAFI CTTAAG 1 cut(s) 808
BstAPI GCANNNNNTGC 2 cut(s) 1738, 1857
BstBI TTCGAA 1 cut(s) 1230
BstC8I GCNNGC 3 cut(s) 458, 1545, 1862
BstDEI CTNAG 5 cut(s) 21, 399, 716, 968, 1017
BstEII GGTNACC 1 cut(s) 955
BstF5I GGATG 4 cut(s) 112, 232, 1217, 1785
BstKTI GATC 5 cut(s) 64, 301, 589, 815, 1588
BstMAI GTCTC 4 cut(s) 714, 775, 1045, 1788
BstMBI GATC 5 cut(s) 61, 298, 586, 812, 1585
BstMWI GCNNNNNNNGC 6 cut(s) 1018, 1406, 1426, 1738, 1848, 1857
BstNI CCWGG 3 cut(s) 418, 1299, 1689
BstNSI RCATGY 1 cut(s) 464
BstPAI GACNNNNGTC 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 955
BstSCI CCNGG 3 cut(s) 416, 1297, 1687
BstV1I GCAGC 3 cut(s) 58, 142, 412
BstV2I GAAGAC 4 cut(s) 277, 401, 713, 983
BstX2I RGATCY 2 cut(s) 298, 812
BstYI RGATCY 2 cut(s) 298, 812
BstZ17I GTATAC 2 cut(s) 534, 1088
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 4 cut(s) 142, 267, 756, 1687
BtsCI GGATG 4 cut(s) 112, 232, 1217, 1785
BtsIMutI CAGTG 3 cut(s) 1118, 1842, 1843
BveI ACCTGC 1 cut(s) 1372
Cac8I GCNNGC 3 cut(s) 458, 1545, 1862
CciI TCATGA 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 4 cut(s) 265, 476, 742, 1685
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 1113, 1629
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 8 cut(s) 195, 216, 253, 377, 461, 584, 1249, 1424
CviQI GTAC 2 cut(s) 1113, 1629
DdeI CTNAG 5 cut(s) 21, 399, 716, 968, 1017
DpnI GATC 5 cut(s) 63, 300, 588, 814, 1587
DpnII GATC 5 cut(s) 61, 298, 586, 812, 1585
DraI TTTAAA 1 cut(s) 1675
Eam1104I CTCTTC 1 cut(s) 1510
EarI CTCTTC 1 cut(s) 1510
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 756
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 2 cut(s) 476, 742
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 3 cut(s) 981, 1259, 1715
Eco91I GGTNACC 1 cut(s) 955
EcoICRI GAGCTC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 955
EcoRI GAATTC 2 cut(s) 90, 1460
EcoRII CCWGG 3 cut(s) 416, 1297, 1687
EcoT14I CCWWGG 1 cut(s) 640
EcoT22I ATGCAT 2 cut(s) 254, 1141
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 8 cut(s) 198, 219, 256, 380, 464, 587, 1252, 1427
FatI CATG 8 cut(s) 194, 215, 252, 376, 460, 583, 1248, 1423
FauI CCCGC 1 cut(s) 584
FauNDI CATATG 1 cut(s) 605
FblI GTMKAC 2 cut(s) 533, 1087
Fnu4HI GCNGC 4 cut(s) 72, 156, 314, 426
FokI GGATG 4 cut(s) 119, 239, 1224, 1792
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 4 cut(s) 72, 156, 314, 426
FspBI CTAG 2 cut(s) 1091, 1490
GluI GCNGC 4 cut(s) 72, 156, 314, 426
GsuI CTGGAG 2 cut(s) 154, 439
HaeIII GGCC 4 cut(s) 142, 267, 756, 1687
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 119
Hin1II CATG 8 cut(s) 198, 219, 256, 380, 464, 587, 1252, 1427
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HindIII AAGCTT 2 cut(s) 1019, 1445
HinfI GANTC 8 cut(s) 167, 572, 632, 783, 964, 1260, 1504, 1713
HpaII CCGG 1 cut(s) 57
HphI GGTGA 5 cut(s) 71, 88, 967, 1580, 1711
Hpy166II GTNNAC 6 cut(s) 54, 534, 611, 660, 742, 1088
Hpy188I TCNGA 8 cut(s) 84, 307, 1069, 1332, 1386, 1585, 1695, 1722
Hpy188III TCNNGA 9 cut(s) 171, 466, 584, 749, 1058, 1313, 1465, 1508, 1613
Hpy8I GTNNAC 6 cut(s) 54, 534, 611, 660, 742, 1088
HpyAV CCTTC 9 cut(s) 312, 746, 755, 883, 1005, 1082, 1234, 1690, 1696
HpyCH4III ACNGT 2 cut(s) 1382, 1649
HpyF10VI GCNNNNNNNGC 6 cut(s) 1018, 1406, 1426, 1738, 1848, 1857
HpyF3I CTNAG 5 cut(s) 21, 399, 716, 968, 1017
Hsp92II CATG 8 cut(s) 198, 219, 256, 380, 464, 587, 1252, 1427
Kzo9I GATC 5 cut(s) 61, 298, 586, 812, 1585
LmnI GCTCC 1 cut(s) 1425
Lsp1109I GCAGC 3 cut(s) 58, 142, 412
LweI GCATC 3 cut(s) 1126, 1148, 1202
MaeI CTAG 2 cut(s) 1091, 1490
MaeIII GTNAC 2 cut(s) 938, 955
MalI GATC 5 cut(s) 63, 300, 588, 814, 1587
MbiI CCGCTC 1 cut(s) 1636
MboI GATC 5 cut(s) 61, 298, 586, 812, 1585
MboII GAAGA 8 cut(s) 277, 392, 406, 531, 713, 983, 1527, 1574
MfeI CAATTG 2 cut(s) 159, 1183
MflI RGATCY 2 cut(s) 298, 812
MhlI GDGCHC 3 cut(s) 339, 1422, 1431
MlyI GAGTC 3 cut(s) 161, 777, 1722
MmeI TCCRAC 1 cut(s) 1364
MnlI CCTC 9 cut(s) 157, 287, 394, 489, 490, 767, 958, 1676, 1786
Mph1103I ATGCAT 2 cut(s) 254, 1141
MroXI GAANNNNTTC 4 cut(s) 571, 631, 1244, 1281
MslI CAYNNNNRTG 3 cut(s) 101, 566, 1332
MspCI CTTAAG 1 cut(s) 808
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 3 cut(s) 418, 1299, 1689
MunI CAATTG 2 cut(s) 159, 1183
Mva1269I GAATGC 3 cut(s) 579, 1226, 1244
MvaI CCWGG 3 cut(s) 418, 1299, 1689
MwoI GCNNNNNNNGC 6 cut(s) 1018, 1406, 1426, 1738, 1848, 1857
NdeI CATATG 1 cut(s) 605
NdeII GATC 5 cut(s) 61, 298, 586, 812, 1585
NlaIII CATG 8 cut(s) 198, 219, 256, 380, 464, 587, 1252, 1427
NlaIV GGNNCC 2 cut(s) 300, 317
NmuCI GTSAC 1 cut(s) 955
NsiI ATGCAT 2 cut(s) 254, 1141
NspI RCATGY 1 cut(s) 464
NspV TTCGAA 1 cut(s) 1230
PagI TCATGA 1 cut(s) 583
PceI AGGCCT 1 cut(s) 756
PctI GAATGC 3 cut(s) 579, 1226, 1244
PdmI GAANNNNTTC 4 cut(s) 571, 631, 1244, 1281
PfeI GAWTC 5 cut(s) 572, 632, 964, 1260, 1504
PflMI CCANNNNNTGG 2 cut(s) 646, 1438
PfoI TCCNGGA 2 cut(s) 416, 1297
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 4 cut(s) 73, 157, 315, 427
PleI GAGTC 3 cut(s) 161, 777, 1721
PpsI GAGTC 3 cut(s) 161, 777, 1721
PshAI GACNNNNGTC 1 cut(s) 437
PsiI TTATAA 1 cut(s) 1876
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 3 cut(s) 416, 1297, 1687
PspEI GGTNACC 1 cut(s) 955
PspGI CCWGG 3 cut(s) 416, 1297, 1687
PspN4I GGNNCC 2 cut(s) 300, 317
PspPI GGNCC 4 cut(s) 265, 476, 742, 1685
PsuI RGATCY 2 cut(s) 298, 812
RsaI GTAC 2 cut(s) 1114, 1630
RsaNI GTAC 2 cut(s) 1113, 1629
RseI CAYNNNNRTG 3 cut(s) 101, 566, 1332
SacI GAGCTC 1 cut(s) 339
SatI GCNGC 4 cut(s) 72, 156, 314, 426
Sau3AI GATC 5 cut(s) 61, 298, 586, 812, 1585
Sau96I GGNCC 4 cut(s) 265, 476, 742, 1685
SchI GAGTC 3 cut(s) 161, 777, 1722
ScrFI CCNGG 3 cut(s) 418, 1299, 1689
SduI GDGCHC 3 cut(s) 339, 1422, 1431
SfaNI GCATC 3 cut(s) 1126, 1148, 1202
SfuI TTCGAA 1 cut(s) 1230
SinI GGWCC 2 cut(s) 476, 742
SmiMI CAYNNNNRTG 3 cut(s) 101, 566, 1332
SmlI CTYRAG 5 cut(s) 119, 778, 808, 1022, 1313
SmoI CTYRAG 5 cut(s) 119, 778, 808, 1022, 1313
SseBI AGGCCT 1 cut(s) 756
SsiI CCGC 4 cut(s) 43, 313, 577, 1636
SspI AATATT 2 cut(s) 1127, 1309
SspMI CTAG 2 cut(s) 1091, 1490
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 756
StyD4I CCNGG 3 cut(s) 416, 1297, 1687
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 1382, 1649
TaqI TCGA 1 cut(s) 1230
TatI WGTACW 1 cut(s) 1112
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 5 cut(s) 572, 632, 964, 1260, 1504
TscAI CASTG 3 cut(s) 1125, 1843, 1849
TseFI GTSAC 1 cut(s) 955
TseI GCWGC 3 cut(s) 71, 155, 425
Tsp45I GTSAC 1 cut(s) 955
TspDTI ATGAA 9 cut(s) 243, 269, 393, 550, 572, 855, 1168, 1237, 1473
TspGWI ACGGA 2 cut(s) 517, 1706
TspRI CASTG 3 cut(s) 1125, 1843, 1849
Van91I CCANNNNNTGG 2 cut(s) 646, 1438
Vha464I CTTAAG 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 476, 742
XapI RAATTY 7 cut(s) 90, 412, 703, 932, 1144, 1460, 1565
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 1334
XmiI GTMKAC 2 cut(s) 533, 1087
XmnI GAANNNNTTC 4 cut(s) 571, 631, 1244, 1281
XspI CTAG 2 cut(s) 1091, 1490
Zsp2I ATGCAT 2 cut(s) 254, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.