Prupe.8G046600_v2.0.a1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000105
Physical Location & Seq
Forward (+)
4921838 .. 4925269
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G046600.1

Sequence Viewer

Length: 2778 bp
ATGGCTGCTGAAGCAAACTCAAGTCCTTCTTCTTCTTCTTCTTCTTCTTGTAGAGACCGTAGATGGAAATATGATGTTTACCTCAGTTGCAGTGGCGACGACATGCCGAGGAGTTTTACAGACCCCTTAGATGTTGCTTTGACTGGGCAAGGAATTCGCACATTTAGATTTAGGAATGGAGGAGCATCTAATCCCCCAGTAATCTTCTTAAAGGCAATTGAAAATTCAAGATTTTCAATCCTTGTTCTTTCAAGAAAATACGCCCATTCAATACGGTGCTTGAATGAGCTTGAGAAGATCGTTGAATGCAGGAAAGAGATGGGACAGGCAGTTCTGGCAGTTTACTTCGACGTGGATCCAGCTGAGAAAGTGTCAAATTGGAGTGCTGCTCTTCTTGTGGTACCCAGTCTCCCTGGATGGCATGTACGAGATCGGTACAAAGCACAAAATATTGAACTAATCGTTAAAGTTTTACGGGCTGAATTGCGTAGCTCACTACCTATTTCTCTACATGAGTGGAATAGTAAATTGCTTGAGAAAAAGAAAAGTGATGCAGTCAAGATGATTATTCAAGGCCTAAATGACAATGAGAAGAGAATTTTTCTAGATATTGTTTGTTTCTTTAAAGGAATGGAGAAAAAGCGAGTAGAGGAAATCCTAGATTGTGATGGTTGTTGCCCGTGCAGTGCAATAGAAGTCCTCATTGAGAATTCCCTCGTAACTATTCTAGACAATAAAGTGATGATGGATAGGTTCATACAAGAAACTGGGCAAGAAATTGTTAGTGCCGAGTCTCTTGGGGAGCGTGGTAAGCAAAGCAGGTTGTGGCTTACTGACGACATCCTTGATGTATTGGGGAACAATAAGGTAACTGTTGAAGGCATTGACATACACTTTCCTGAACTCAAAGAGGCACAATGGAACGAAGAGGCCTTCTCTAATATGCCTTGTCTTAGATTTCTCCGTATTCATGGTCTGTATATGACCGAAGTCCCCATACATCTATCTAATGCCTTAACGTTTCTCGAGTGGTGTGGGTATCCTGGAAAAGTTCTCCCACAAAGTTTTCAACCTGAGGAACTTCGCGAACTGAATTTGTGCAGTAGCAAAATCGAACGGCCTTGGGCTGGAAAAATGTTGAAATTCATCAATGTTAGCTACTCCCGAGAGCTGTCCAGCACGCCCGACTTTTCAGGTACTCCGAATCTTCAGAGATTAGATTTTGAAGGTTGTCTGAATCTGGTGGAGATAGACCCATCCATTGCTCTGCTCAAAAGGCTTATATTCTTGAGTTTTAAAGAATGTACAAGTCTAGAAAGTCTTCCATCTCCGATTGCAATGGAGTCCCTTGAAGTTTTTATTCTTTCTGGCTGTTCAAACATTAAGAAATTTCCAGAATTTGTGGTACCTATGGACCACTGGTTGGAACTTTATTTAGATAAGACAGCAATAGAAAAGTTACCGTTATCAATTGGACACCTGACTGCCCTAACATTATTAAAACTAAAAGATTGCAAGAATCTCACGTGTCTTCCAAGAAATATTCACAAGTTGGAGTCCCTCCAAACTGTCGATGTTTCTGGATGCTCAAAACTTCGAAAGCCGCCAGAAAGCTTGGGGAGGATAAGTTGTCTGGAGCGGCTTGATGCGGGTGGTACCTCCATAATCGATGTATCACCATCCATTTTCCTTCTGAAGATTCTTGAAGCTTTATCTCTTCGTGGATGTAAAGGGATTCTGCGATTGCAGTTGCCACCTGTATCTTCTTTGACACTATTGAATCTAAGTGACTGCAATCTTCAGCAGGGAACAATCCCAGCTGATATTGGTTGCTTAGCCTCATTAGTATCATTAGATCTTAGTAAAAACAGTTTTGATAGAGTTCCCACAGGCACTAGTCAGCTTACTAAGCTTCAAGGTTTGAATGTGGAGAGTTGTAAAAATCTTGAGAGTATGCCAGAGCTATCATCAAATATAGACTTCAGTGTTGGATCAGCTGGCCACTATTCACATGAAAGGCTATCTTGTCCCTCGAATTTTTTCAGAATGGGGGACTCTTGCTTGAATTTTGTTAACTGCTCCAAATTGGCTGGCAATCAAGACTGCAACAATGCATTTACAATGCTAAGGAGGTTCCTTAAGGGAAACCCTTGTCCAGGAAAGAAGTTTGAAACTATAATACCTGGCAAAGAACTTCCTCAGTATTTCAGTTATCAACATGAGGGGTCTGTAGTAAGCATGAGCTTACCTCAGAATTGGTATACGGATAAGTGCATGGGATATGCTGTTTGTGCTGTTGTTGGTTTCCGTCGATATCGTCCAGCTAACTCGCTTGGTAAATTGAGGCATGAAGCGTTTGGAACTACACATGGTCTCGGCTGTGAAGTGAAGTGCAGTAAGTCGGATATACCTGGCTTGCATCCTTTCTTACGCTGCAGCCAAGAACTAAGTCAAATTGAGTCAGATCACCTTTGGATCTCCTTTGTATCTTGTGAAAATTTTAGTACAGAGTGGAAAAACTGCTGTCGTCACCCTGAATTTTCATTTCAACCCTATGGCGCTGGCTTAGTGGTGAAGAAGAGTGGGGTTCGTTTGATATATCTGCAAGATATTGAAGATAGGAAACTAATAATGACCCAATCTAGAGGCAGTGCCTCCCCTTGTGCCATTGTTCAACAATCTGACAGTCTACAGGAAATTGGTGGAACAATAAGTAACTCCAAGGTGGATGACGCAGCCTTAGACAACGTCCATTTATCAAAGAAATGTCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

926

Amino Acids

103.42

Weight (kDa)

6.97

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 810
Acc65I GGTACC 3 cut(s) 400, 1405, 1655
AccB1I GGYRCC 3 cut(s) 400, 1405, 1655
AccB7I CCANNNNNTGG 1 cut(s) 1423
AccBSI CCGCTC 1 cut(s) 1639
AccI GTMKAC 2 cut(s) 2261, 2689
AccII CGCG 1 cut(s) 1086
AciI CCGC 3 cut(s) 1604, 1639, 1649
AclI AACGTT 1 cut(s) 1019
AclWI GGATC 4 cut(s) 350, 363, 1999, 2483
AcoI YGGCCR 1 cut(s) 1999
AcuI CTGAAG 5 cut(s) 30, 1193, 1715, 1784, 1966
AcvI CACGTG 1 cut(s) 1527
AfaI GTAC 8 cut(s) 402, 426, 437, 1198, 1306, 1407, 1657, 2506
AfiI CCNNNNNNNGG 3 cut(s) 1127, 1423, 2156
AflII CTTAAG 1 cut(s) 2138
AflIII ACRYGT 1 cut(s) 1526
AhlI ACTAGT 1 cut(s) 1895
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 5 cut(s) 412, 1042, 2155, 2182, 2410
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
Alw26I GTCTC 4 cut(s) 48, 413, 798, 2378
AlwI GGATC 4 cut(s) 350, 363, 1999, 2483
Ama87I CYCGRG 2 cut(s) 1025, 1164
AoxI GGCC 4 cut(s) 574, 930, 1118, 1999
ApeKI GCWGC 5 cut(s) 5, 386, 2433, 2436, 2735
Asp700I GAANNNNTTC 2 cut(s) 1320, 2039
Asp718I GGTACC 3 cut(s) 400, 1405, 1655
AspLEI GCGC 1 cut(s) 2561
AspS9I GGNCC 1 cut(s) 1414
AsuHPI GGTGA 4 cut(s) 1668, 2459, 2522, 2584
AsuII TTCGAA 1 cut(s) 1597
AvaI CYCGRG 2 cut(s) 1025, 1164
AvaII GGWCC 1 cut(s) 1414
AxyI CCTNAGG 1 cut(s) 1074
BalI TGGCCA 1 cut(s) 2001
BamHI GGATCC 1 cut(s) 355
BanI GGYRCC 3 cut(s) 400, 1405, 1655
BarI GAAGNNNNNNTAC 2 cut(s) 981, 1013
BbrPI CACGTG 1 cut(s) 1527
BbsI GAAGAC 2 cut(s) 1313, 1523
BbvI GCAGC 4 cut(s) 373, 2420, 2448, 2747
BccI CCATC 8 cut(s) 57, 313, 411, 662, 739, 1264, 1333, 1687
BceAI ACGGC 1 cut(s) 1133
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 5 cut(s) 414, 1044, 2157, 2184, 2412
BciVI GTATCC 1 cut(s) 1050
BcoDI GTCTC 4 cut(s) 48, 413, 798, 2378
BcuI ACTAGT 1 cut(s) 1895
BfaI CTAG 6 cut(s) 605, 659, 728, 1313, 1896, 2643
BfmI CTRYAG 3 cut(s) 2229, 2434, 2690
BfoI RGCGCY 1 cut(s) 2562
BfrI CTTAAG 1 cut(s) 2138
BfuAI ACCTGC 1 cut(s) 810
BfuI GTATCC 1 cut(s) 1050
BglII AGATCT 1 cut(s) 1855
BisI GCNGC 7 cut(s) 6, 387, 1604, 1640, 2434, 2437, 2736
BlpI GCTNAGC 1 cut(s) 1834
BlsI GCNGC 7 cut(s) 7, 388, 1605, 1641, 2435, 2438, 2737
Bme1390I CCNGG 5 cut(s) 414, 1044, 2157, 2184, 2412
Bme18I GGWCC 1 cut(s) 1414
BmeT110I CYCGRG 2 cut(s) 1025, 1164
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 1414
BmiI GGNNCC 5 cut(s) 357, 402, 1407, 1657, 2135
BmrFI CCNGG 5 cut(s) 414, 1044, 2157, 2184, 2412
BmrI ACTGGG 4 cut(s) 153, 191, 399, 777
BmsI GCATC 5 cut(s) 194, 541, 1574, 1636, 2428
BmuI ACTGGG 4 cut(s) 153, 191, 399, 777
BoxI GACNNNNGTC 1 cut(s) 989
BpiI GAAGAC 2 cut(s) 1313, 1523
BplI GAGNNNNNCTC 6 cut(s) 373, 405, 920, 952, 2233, 2265
BpmI CTGGAG 1 cut(s) 1655
Bpu10I CCTNAGC 1 cut(s) 2126
Bpu1102I GCTNAGC 1 cut(s) 1834
Bpu14I TTCGAA 1 cut(s) 1597
BpuEI CTTGAG 5 cut(s) 4, 311, 554, 1309, 1967
Bsa29I ATCGAT 1 cut(s) 1668
BsaAI YACGTR 1 cut(s) 1527
BsaI GGTCTC 2 cut(s) 48, 2378
BsaJI CCNNGG 4 cut(s) 107, 412, 1121, 2721
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 1612, 1642
Bsc4I CCNNNNNNNGG 3 cut(s) 1127, 1423, 2156
Bse1I ACTGG 5 cut(s) 148, 197, 405, 772, 1424
Bse21I CCTNAGG 1 cut(s) 1074
Bse3DI GCAATG 2 cut(s) 1260, 1344
BseBI CCWGG 5 cut(s) 414, 1044, 2157, 2184, 2412
BseCI ATCGAT 1 cut(s) 1668
BseDI CCNNGG 4 cut(s) 107, 412, 1121, 2721
BseGI GGATG 8 cut(s) 422, 840, 1256, 1589, 1679, 1730, 2419, 2734
BseLI CCNNNNNNNGG 3 cut(s) 1127, 1423, 2156
BseMI GCAATG 2 cut(s) 1260, 1344
BseMII CTCAG 5 cut(s) 97, 354, 1065, 2213, 2264
BseNI ACTGG 5 cut(s) 148, 197, 405, 772, 1424
BseRI GAGGAG 2 cut(s) 124, 195
BseXI GCAGC 4 cut(s) 373, 2420, 2448, 2747
BseYI CCCAGC 1 cut(s) 1816
BsgI GTGCAG 3 cut(s) 703, 1120, 2413
Bsh1236I CGCG 1 cut(s) 1086
BshFI GGCC 4 cut(s) 576, 932, 1120, 2001
BshNI GGYRCC 3 cut(s) 400, 1405, 1655
BshVI ATCGAT 1 cut(s) 1668
BsiHKCI CYCGRG 2 cut(s) 1025, 1164
BslFI GGGAC 6 cut(s) 336, 977, 1330, 1543, 2013, 2066
BslI CCNNNNNNNGG 3 cut(s) 1127, 1423, 2156
BsmAI GTCTC 4 cut(s) 48, 413, 798, 2378
BsmFI GGGAC 6 cut(s) 336, 977, 1330, 1543, 2013, 2066
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 4 cut(s) 576, 932, 1120, 2001
Bso31I GGTCTC 2 cut(s) 48, 2378
BsoBI CYCGRG 2 cut(s) 1025, 1164
Bsp119I TTCGAA 1 cut(s) 1597
Bsp1407I TGTACA 1 cut(s) 1304
Bsp143I GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
Bsp1720I GCTNAGC 1 cut(s) 1834
Bsp68I TCGCGA 1 cut(s) 1086
BspACI CCGC 3 cut(s) 1604, 1639, 1649
BspANI GGCC 4 cut(s) 576, 932, 1120, 2001
BspCNI CTCAG 5 cut(s) 96, 355, 1066, 2212, 2263
BspDI ATCGAT 1 cut(s) 1668
BspFNI CGCG 1 cut(s) 1086
BspLI GGNNCC 5 cut(s) 357, 402, 1407, 1657, 2135
BspMAI CTGCAG 1 cut(s) 2438
BspMI ACCTGC 1 cut(s) 810
BspPI GGATC 4 cut(s) 350, 363, 1999, 2483
BspQI GCTCTTC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 1597
BspT107I GGYRCC 3 cut(s) 400, 1405, 1655
BspTI CTTAAG 1 cut(s) 2138
BspTNI GGTCTC 2 cut(s) 48, 2378
BsrBI CCGCTC 1 cut(s) 1639
BsrDI GCAATG 2 cut(s) 1260, 1344
BsrGI TGTACA 1 cut(s) 1304
BsrI ACTGG 5 cut(s) 148, 197, 405, 772, 1424
BssECI CCNNGG 4 cut(s) 107, 412, 1121, 2721
BssMI GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
BssNAI GTATAC 1 cut(s) 2262
BssT1I CCWWGG 2 cut(s) 1121, 2721
Bst1107I GTATAC 1 cut(s) 2262
Bst2UI CCWGG 5 cut(s) 414, 1044, 2157, 2184, 2412
Bst4CI ACNGT 7 cut(s) 59, 276, 874, 1464, 1570, 1871, 2687
Bst6I CTCTTC 5 cut(s) 396, 587, 921, 1722, 2573
BstAFI CTTAAG 1 cut(s) 2138
BstAUI TGTACA 1 cut(s) 1304
BstBAI YACGTR 1 cut(s) 1527
BstBI TTCGAA 1 cut(s) 1597
BstC8I GCNNGC 5 cut(s) 1181, 1999, 2092, 2417, 2563
BstENI CCTNNNNNAGG 1 cut(s) 2154
BstF5I GGATG 8 cut(s) 422, 840, 1256, 1589, 1679, 1730, 2419, 2734
BstFNI CGCG 1 cut(s) 1086
BstH2I RGCGCY 1 cut(s) 2562
BstHHI GCGC 1 cut(s) 2561
BstKTI GATC 7 cut(s) 300, 358, 433, 1858, 1994, 2467, 2478
BstMAI GTCTC 4 cut(s) 48, 413, 798, 2378
BstMBI GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
BstMWI GCNNNNNNNGC 6 cut(s) 11, 335, 811, 1276, 1909, 2291
BstNI CCWGG 5 cut(s) 414, 1044, 2157, 2184, 2412
BstNSI RCATGY 2 cut(s) 106, 425
BstPAI GACNNNNGTC 1 cut(s) 989
BstSCI CCNGG 5 cut(s) 412, 1042, 2155, 2182, 2410
BstSFI CTRYAG 3 cut(s) 2229, 2434, 2690
BstUI CGCG 1 cut(s) 1086
BstV1I GCAGC 4 cut(s) 373, 2420, 2448, 2747
BstV2I GAAGAC 2 cut(s) 1313, 1523
BstX2I RGATCY 3 cut(s) 355, 1855, 2475
BstYI RGATCY 3 cut(s) 355, 1855, 2475
BstZ17I GTATAC 1 cut(s) 2262
Bsu15I ATCGAT 1 cut(s) 1668
Bsu36I CCTNAGG 1 cut(s) 1074
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 4 cut(s) 576, 932, 1120, 2001
BsuTUI ATCGAT 1 cut(s) 1668
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 8 cut(s) 422, 840, 1256, 1589, 1679, 1730, 2419, 2734
BtsI GCAGTG 3 cut(s) 97, 691, 2656
BtsIMutI CAGTG 5 cut(s) 97, 691, 1417, 1990, 2656
BtuMI TCGCGA 1 cut(s) 1086
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 5 cut(s) 1181, 1999, 2092, 2417, 2563
CfoI GCGC 1 cut(s) 2561
Cfr13I GGNCC 1 cut(s) 1414
ClaI ATCGAT 1 cut(s) 1668
CseI GACGC 1 cut(s) 2741
Csp6I GTAC 8 cut(s) 401, 425, 436, 1197, 1305, 1406, 1656, 2505
CviQI GTAC 8 cut(s) 401, 425, 436, 1197, 1305, 1406, 1656, 2505
DpnI GATC 7 cut(s) 299, 357, 432, 1857, 1993, 2466, 2477
DpnII GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
DraI TTTAAA 2 cut(s) 625, 1297
EaeI YGGCCR 1 cut(s) 1999
Eam1104I CTCTTC 5 cut(s) 396, 587, 921, 1722, 2573
EarI CTCTTC 5 cut(s) 396, 587, 921, 1722, 2573
Eco130I CCWWGG 2 cut(s) 1121, 2721
Eco147I AGGCCT 2 cut(s) 576, 932
Eco31I GGTCTC 2 cut(s) 48, 2378
Eco32I GATATC 1 cut(s) 2315
Eco47I GGWCC 1 cut(s) 1414
Eco57I CTGAAG 5 cut(s) 30, 1193, 1715, 1784, 1966
Eco72I CACGTG 1 cut(s) 1527
Eco81I CCTNAGG 1 cut(s) 1074
Eco88I CYCGRG 2 cut(s) 1025, 1164
EcoNI CCTNNNNNAGG 1 cut(s) 2154
EcoRI GAATTC 2 cut(s) 153, 709
EcoRII CCWGG 5 cut(s) 412, 1042, 2155, 2182, 2410
EcoRV GATATC 1 cut(s) 2315
EcoT14I CCWWGG 2 cut(s) 1121, 2721
EcoT22I ATGCAT 1 cut(s) 2116
ErhI CCWWGG 2 cut(s) 1121, 2721
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 2008, 2040
FaqI GGGAC 6 cut(s) 336, 977, 1330, 1543, 2013, 2066
FauI CCCGC 1 cut(s) 1642
FblI GTMKAC 2 cut(s) 2261, 2689
Fnu4HI GCNGC 7 cut(s) 6, 387, 1604, 1640, 2434, 2437, 2736
FokI GGATG 8 cut(s) 429, 827, 1243, 1596, 1666, 1737, 2406, 2741
Fsp4HI GCNGC 7 cut(s) 6, 387, 1604, 1640, 2434, 2437, 2736
FspBI CTAG 6 cut(s) 605, 659, 728, 1313, 1896, 2643
GlaI GCGC 1 cut(s) 2560
GluI GCNGC 7 cut(s) 6, 387, 1604, 1640, 2434, 2437, 2736
GsaI CCCAGC 1 cut(s) 1820
GsuI CTGGAG 1 cut(s) 1655
HaeII RGCGCY 1 cut(s) 2562
HaeIII GGCC 4 cut(s) 576, 932, 1120, 2001
HgaI GACGC 1 cut(s) 2741
HhaI GCGC 1 cut(s) 2561
Hin6I GCGC 1 cut(s) 2559
HinP1I GCGC 1 cut(s) 2559
HincII GTYRAC 1 cut(s) 2074
HindII GTYRAC 1 cut(s) 2074
HindIII AAGCTT 3 cut(s) 1612, 1707, 1910
HpaI GTTAAC 1 cut(s) 2074
HphI GGTGA 4 cut(s) 1668, 2459, 2522, 2584
Hpy166II GTNNAC 5 cut(s) 79, 343, 2074, 2262, 2690
Hpy8I GTNNAC 5 cut(s) 79, 343, 2074, 2262, 2690
Hpy99I CGWCG 3 cut(s) 101, 353, 2313
HpyAV CCTTC 5 cut(s) 36, 872, 943, 1220, 1700
HpyCH4III ACNGT 7 cut(s) 59, 276, 874, 1464, 1570, 1871, 2687
HpyCH4IV ACGT 4 cut(s) 351, 1019, 1526, 2748
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 335, 811, 1276, 1909, 2291
HpySE526I ACGT 4 cut(s) 351, 1019, 1526, 2748
HspAI GCGC 1 cut(s) 2559
KpnI GGTACC 3 cut(s) 404, 1409, 1659
KspAI GTTAAC 1 cut(s) 2074
Kzo9I GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 182, 802, 1636, 2084
Lsp1109I GCAGC 4 cut(s) 373, 2420, 2448, 2747
LweI GCATC 5 cut(s) 194, 541, 1574, 1636, 2428
MaeI CTAG 6 cut(s) 605, 659, 728, 1313, 1896, 2643
MaeII ACGT 4 cut(s) 351, 1019, 1526, 2748
MaeIII GTNAC 6 cut(s) 718, 868, 1458, 1787, 2528, 2714
MalI GATC 7 cut(s) 299, 357, 432, 1857, 1993, 2466, 2477
MbiI CCGCTC 1 cut(s) 1639
MboI GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
MfeI CAATTG 2 cut(s) 216, 1470
MflI RGATCY 3 cut(s) 355, 1855, 2475
MlsI TGGCCA 1 cut(s) 2001
MluNI TGGCCA 1 cut(s) 2001
MlyI GAGTC 5 cut(s) 800, 1352, 1565, 2048, 2468
MmeI TCCRAC 4 cut(s) 1404, 1533, 1969, 2382
Mox20I TGGCCA 1 cut(s) 2001
Mph1103I ATGCAT 1 cut(s) 2116
MroXI GAANNNNTTC 2 cut(s) 1320, 2039
MscI TGGCCA 1 cut(s) 2001
MseI TTAA 9 cut(s) 209, 465, 624, 1016, 1296, 1383, 1499, 2073, 2139
Msp20I TGGCCA 1 cut(s) 2001
MspA1I CMGCKG 3 cut(s) 362, 1820, 1997
MspCI CTTAAG 1 cut(s) 2138
MspR9I CCNGG 5 cut(s) 414, 1044, 2157, 2184, 2412
MunI CAATTG 2 cut(s) 216, 1470
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 5 cut(s) 414, 1044, 2157, 2184, 2412
MvnI CGCG 1 cut(s) 1086
MwoI GCNNNNNNNGC 6 cut(s) 11, 335, 811, 1276, 1909, 2291
NdeII GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
NlaIV GGNNCC 5 cut(s) 357, 402, 1407, 1657, 2135
NmeAIII GCCGAG 3 cut(s) 132, 814, 2355
NmuCI GTSAC 2 cut(s) 1787, 2528
NruI TCGCGA 1 cut(s) 1086
NsiI ATGCAT 1 cut(s) 2116
NspI RCATGY 2 cut(s) 106, 425
NspV TTCGAA 1 cut(s) 1597
PaeR7I CTCGAG 1 cut(s) 1025
PceI AGGCCT 2 cut(s) 576, 932
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 2 cut(s) 1320, 2039
PfeI GAWTC 6 cut(s) 1204, 1237, 1519, 1699, 1735, 1780
PflFI GACNNNGTC 1 cut(s) 2747
PflMI CCANNNNNTGG 1 cut(s) 1423
PfoI TCCNGGA 2 cut(s) 1042, 2155
PkrI GCNGC 7 cut(s) 7, 388, 1605, 1641, 2435, 2438, 2737
PleI GAGTC 5 cut(s) 799, 1351, 1564, 2048, 2467
PmaCI CACGTG 1 cut(s) 1527
PmlI CACGTG 1 cut(s) 1527
PpsI GAGTC 5 cut(s) 799, 1351, 1564, 2048, 2467
Ppu21I YACGTR 1 cut(s) 1527
PshAI GACNNNNGTC 1 cut(s) 989
Psp1406I AACGTT 1 cut(s) 1019
Psp6I CCWGG 5 cut(s) 412, 1042, 2155, 2182, 2410
PspCI CACGTG 1 cut(s) 1527
PspFI CCCAGC 1 cut(s) 1816
PspGI CCWGG 5 cut(s) 412, 1042, 2155, 2182, 2410
PspN4I GGNNCC 5 cut(s) 357, 402, 1407, 1657, 2135
PspPI GGNCC 1 cut(s) 1414
PstI CTGCAG 1 cut(s) 2438
PsuI RGATCY 3 cut(s) 355, 1855, 2475
PsyI GACNNNGTC 1 cut(s) 2747
PvuII CAGCTG 3 cut(s) 362, 1820, 1997
RruI TCGCGA 1 cut(s) 1086
RsaI GTAC 8 cut(s) 402, 426, 437, 1198, 1306, 1407, 1657, 2506
RsaNI GTAC 8 cut(s) 401, 425, 436, 1197, 1305, 1406, 1656, 2505
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 9 cut(s) 209, 465, 624, 1016, 1296, 1383, 1499, 2073, 2139
SatI GCNGC 7 cut(s) 6, 387, 1604, 1640, 2434, 2437, 2736
Sau3AI GATC 7 cut(s) 297, 355, 430, 1855, 1991, 2464, 2475
Sau96I GGNCC 1 cut(s) 1414
SchI GAGTC 5 cut(s) 800, 1352, 1565, 2048, 2468
ScrFI CCNGG 5 cut(s) 414, 1044, 2157, 2184, 2412
SfaNI GCATC 5 cut(s) 194, 541, 1574, 1636, 2428
SfcI CTRYAG 3 cut(s) 2229, 2434, 2690
Sfr274I CTCGAG 1 cut(s) 1025
SfuI TTCGAA 1 cut(s) 1597
SinI GGWCC 1 cut(s) 1414
SlaI CTCGAG 1 cut(s) 1025
SmlI CTYRAG 7 cut(s) 19, 290, 533, 1025, 1288, 1946, 2138
SmoI CTYRAG 7 cut(s) 19, 290, 533, 1025, 1288, 1946, 2138
SpeI ACTAGT 1 cut(s) 1895
SseBI AGGCCT 2 cut(s) 576, 932
SsiI CCGC 3 cut(s) 1604, 1639, 1649
SspI AATATT 2 cut(s) 451, 1543
SspMI CTAG 6 cut(s) 605, 659, 728, 1313, 1896, 2643
StuI AGGCCT 2 cut(s) 576, 932
StyD4I CCNGG 5 cut(s) 412, 1042, 2155, 2182, 2410
StyI CCWWGG 2 cut(s) 1121, 2721
TaaI ACNGT 7 cut(s) 59, 276, 874, 1464, 1570, 1871, 2687
TaiI ACGT 4 cut(s) 354, 1022, 1529, 2751
TaqI TCGA 9 cut(s) 348, 1026, 1113, 1572, 1597, 1668, 2033, 2311, 2770
TaqII GACCGA 1 cut(s) 1001
TatI WGTACW 2 cut(s) 1304, 2504
TauI GCSGC 2 cut(s) 1606, 1642
TfiI GAWTC 6 cut(s) 1204, 1237, 1519, 1699, 1735, 1780
Tru1I TTAA 9 cut(s) 209, 465, 624, 1016, 1296, 1383, 1499, 2073, 2139
Tru9I TTAA 9 cut(s) 209, 465, 624, 1016, 1296, 1383, 1499, 2073, 2139
TscAI CASTG 5 cut(s) 97, 691, 1424, 1990, 2656
TseFI GTSAC 2 cut(s) 1787, 2528
TseI GCWGC 5 cut(s) 5, 386, 2433, 2436, 2735
Tsp45I GTSAC 2 cut(s) 1787, 2528
TspDTI ATGAA 6 cut(s) 745, 959, 1135, 2028, 2364, 2532
TspGWI ACGGA 3 cut(s) 953, 2279, 2297
TspRI CASTG 5 cut(s) 97, 691, 1424, 1990, 2656
Tth111I GACNNNGTC 1 cut(s) 2747
Van91I CCANNNNNTGG 1 cut(s) 1423
Vha464I CTTAAG 1 cut(s) 2138
VpaK11BI GGWCC 1 cut(s) 1414
XagI CCTNNNNNAGG 1 cut(s) 2154
XbaI TCTAGA 4 cut(s) 604, 727, 1312, 2642
XceI RCATGY 2 cut(s) 106, 425
XhoI CTCGAG 1 cut(s) 1025
XmiI GTMKAC 2 cut(s) 2261, 2689
XmnI GAANNNNTTC 2 cut(s) 1320, 2039
XspI CTAG 6 cut(s) 605, 659, 728, 1313, 1896, 2643
Zsp2I ATGCAT 1 cut(s) 2116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.