Rmu_sc0006638.1_g000017

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006638.1
OG0000105
Physical Location & Seq
Forward (+)
60021 .. 65348
5328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006638.1_g000017.1.cds

Sequence Viewer

Length: 822 bp
atgactacccaagcagatattccttcttcttctgctcctctccctccgatccctaaatacggtgtctttctcagttccagcggagaagacaccgatcaaaattttacagatcatctctgttatgctctgaaccggaaggggatattgacatttagagatggtgaagaactcgagaggggaaaagcaattgaagaatcaagatgtgcaattgtggttctttcaggaaactacaccaatccatggtgtttggatgcgattgcaaagatcgttgaatgcaaggaagtgatgatgaaactgggagtactcccagtctttcttgatggaattccttctgcaggaaatagatttgaaactataattcctggcagtgaaatctctgagctgttcagtgatcaaagtgtgggaccagtaataagcatggagctacctcgacaatggcacaagattaagtggatgggatatgcattttgtgcttgttttgttatccgtcgagatcttccagttccagctaaccggcttggtaaatggaagttaggaacccatagcactgcaaatggtcttcgatgcgaagtgaagcctgagaatctgggtgtggctggctggtgtccttcctttgcctgcagccaagaattaggccaaattgagtcggaacacctttggctatcctttgtctctggtgattattttggaacagcatggcaagaaacctgtcataacattgagtttacattcaaaacattaggcactggtatggaggtgaagaaatgtggagtccgtctgatatacaagcaagatttagatttgactggaatgaaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

273

Amino Acids

30.38

Weight (kDa)

5.8

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 2 cut(s) 100, 324
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 3 cut(s) 59, 240, 335
AgsI TTSAA 4 cut(s) 191, 272, 350, 733
AjnI CCWGG 1 cut(s) 361
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 3 cut(s) 382, 424, 509
AluI AGCT 3 cut(s) 382, 424, 509
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 2 cut(s) 100, 324
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 3 cut(s) 173, 689, 769
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 93, 551
BbvI GCAGC 1 cut(s) 633
BccI CCATC 3 cut(s) 152, 314, 448
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 676
BfmI CTRYAG 2 cut(s) 333, 619
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 622
BlsI GCNGC 1 cut(s) 623
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 405, 538
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 2 cut(s) 302, 305
BmsI GCATC 2 cut(s) 241, 554
BmuI ACTGGG 2 cut(s) 302, 305
BpiI GAAGAC 2 cut(s) 93, 551
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 240, 335
Bse118I RCCGGY 1 cut(s) 513
Bse1I ACTGG 6 cut(s) 300, 308, 407, 500, 751, 811
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 2 cut(s) 256, 459
BseLI CCNNNNNNNGG 3 cut(s) 59, 240, 335
BseMII CTCAG 3 cut(s) 85, 369, 570
BseNI ACTGG 6 cut(s) 300, 308, 407, 500, 751, 811
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 633
BshFI GGCC 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 133, 514
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 3 cut(s) 59, 240, 335
BsmAI GTCTC 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 636
BsoBI CYCGRG 1 cut(s) 170
Bsp143I GATC 6 cut(s) 48, 94, 109, 264, 391, 493
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 3 cut(s) 84, 370, 571
BspLI GGNNCC 2 cut(s) 405, 538
BspMAI CTGCAG 2 cut(s) 337, 623
BspPI GGATC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 513
BsrI ACTGG 6 cut(s) 300, 308, 407, 500, 751, 811
BssAI RCCGGY 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 6 cut(s) 48, 94, 109, 264, 391, 493
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 598, 619
BstDEI CTNAG 3 cut(s) 71, 378, 579
BstDSI CCRYGG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 256, 459
BstKTI GATC 6 cut(s) 51, 97, 112, 267, 394, 496
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 6 cut(s) 48, 94, 109, 264, 391, 493
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 2 cut(s) 333, 619
BstV1I GCAGC 1 cut(s) 633
BstV2I GAAGAC 2 cut(s) 93, 551
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 256, 459
BtsI GCAGTG 2 cut(s) 373, 546
BtsIMutI CAGTG 4 cut(s) 373, 394, 546, 744
Cac8I GCNNGC 2 cut(s) 598, 619
Cfr10I RCCGGY 1 cut(s) 513
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 302
CviAII CATG 3 cut(s) 240, 418, 696
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 3 cut(s) 71, 378, 579
DpnI GATC 6 cut(s) 50, 96, 111, 266, 393, 495
DpnII GATC 6 cut(s) 48, 94, 109, 264, 391, 493
Eco130I CCWWGG 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 243, 421, 699
FaqI GGGAC 1 cut(s) 417
FatI CATG 3 cut(s) 239, 417, 695
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 2 cut(s) 263, 466
Fsp4HI GCNGC 1 cut(s) 622
GluI GCNGC 1 cut(s) 622
HaeIII GGCC 1 cut(s) 636
HapII CCGG 2 cut(s) 133, 514
Hin1II CATG 3 cut(s) 243, 421, 699
HinfI GANTC 4 cut(s) 194, 583, 644, 771
HpaII CCGG 2 cut(s) 133, 514
HphI GGTGA 3 cut(s) 173, 689, 769
Hpy166II GTNNAC 1 cut(s) 726
Hpy188I TCNGA 5 cut(s) 48, 129, 379, 649, 780
Hpy188III TCNNGA 5 cut(s) 172, 198, 222, 317, 491
Hpy8I GTNNAC 1 cut(s) 726
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 4 cut(s) 33, 130, 339, 618
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 7 cut(s) 206, 260, 276, 335, 464, 551, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 3 cut(s) 71, 378, 579
Hsp92II CATG 3 cut(s) 243, 421, 699
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 6 cut(s) 48, 94, 109, 264, 391, 493
LmnI GCTCC 2 cut(s) 40, 421
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 2 cut(s) 241, 554
MalI GATC 6 cut(s) 50, 96, 111, 266, 393, 495
MboI GATC 6 cut(s) 48, 94, 109, 264, 391, 493
MboII GAAGA 8 cut(s) 18, 21, 98, 176, 203, 488, 551, 772
MfeI CAATTG 2 cut(s) 186, 207
MflI RGATCY 1 cut(s) 493
MluCI AATT 7 cut(s) 100, 186, 207, 324, 357, 629, 639
MlyI GAGTC 2 cut(s) 653, 780
MmeI TCCRAC 1 cut(s) 627
MnlI CCTC 5 cut(s) 48, 54, 168, 438, 748
Mph1103I ATGCAT 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 2 cut(s) 133, 514
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 2 cut(s) 186, 207
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 470
NcoI CCATGG 1 cut(s) 239
NdeII GATC 6 cut(s) 48, 94, 109, 264, 391, 493
NlaIII CATG 3 cut(s) 243, 421, 699
NlaIV GGNNCC 2 cut(s) 405, 538
NsiI ATGCAT 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 170
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 194, 583
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 2 cut(s) 652, 779
PpsI GAGTC 2 cut(s) 652, 779
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 405, 538
PspPI GGNCC 1 cut(s) 404
PstI CTGCAG 2 cut(s) 337, 623
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 6 cut(s) 48, 94, 109, 264, 391, 493
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 2 cut(s) 653, 780
ScrFI CCNGG 1 cut(s) 363
SetI ASST 7 cut(s) 384, 426, 430, 511, 657, 710, 759
SfaNI GCATC 2 cut(s) 241, 554
SfcI CTRYAG 2 cut(s) 333, 619
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 1 cut(s) 404
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 7 cut(s) 100, 186, 207, 324, 357, 629, 639
SsiI CCGC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 4 cut(s) 171, 430, 490, 562
TasI AATT 7 cut(s) 100, 186, 207, 324, 357, 629, 639
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 2 cut(s) 194, 583
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 4 cut(s) 373, 394, 553, 751
TseI GCWGC 1 cut(s) 621
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 2 cut(s) 476, 764
TspRI CASTG 4 cut(s) 373, 394, 553, 751
Van91I CCANNNNNTGG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 404
XagI CCTNNNNNAGG 1 cut(s) 333
XapI RAATTY 2 cut(s) 100, 324
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.