Rmu_sc0009428.1_g000002

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009428.1
OG0000105
Physical Location & Seq
Forward (+)
20432 .. 24610
4179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009428.1_g000002.1.cds

Sequence Viewer

Length: 3579 bp
atggcgtcaacctcttctcgtcgtcaatggaaatacgatgtgtttctaagtttcagggggttagatacccgctatatgtttagcggtgatctgtatgctgcactaaatcagaaaggaattgtcacctttatggatgacccagagcttcagaaagggaaatccattaggcctgaacttttagctgcaattgaagagtctagatctgcgattgtcattctctcacggaactatgctcgttcgtcatggtgcttggatgaacttgtcaagattattcaatgcatgaaagagatgggccaacaagtcctccccgtcttctactacggcgtggatccttctgatgtgcggcaccagacgggaagttttgagctcgaatcaggacagagtgaagtaagcgaacatgaagaagtttatgggaagaatccggacagagtgaatgcgttgactgaggtggccaatctttctggctgggatttgaagaattattcaatcaaatcagaaataattaaggaaattgttaatcatatactaaagaagtccgtgtatacatcttcaagtgttgacaagggcttcataggaatggattcccgcattcatgatttattaagcaattacatacatccgcagctttgtggggtgcgttttatagggatccatggcatgcggggcataggtaagacagcacttgcccgagctatctatgatgaaatttgtcaagattttgaccgaacctgctttctttccaatgttagagaaatgtctaaaaccaatggcctagtttctctacaagaaaaacttctttctaaaatcctgatggcaaaaattgaaaatatagaggatgaatacacaggagctgctatgatagaaaggcggttgtgtaggataaaggtgcttgttgttattgatgatgtggatcagttgacacaattacagaaattggctggaagtcgcaactggtttggtccagggagtaaaattatcataaccaccacagatattcagttgttaaagacacatgatgttgatgctacatacaaggctaacgggttaaactgtgatgaagcacttcaacttttgagtttgaaggcttttaagaaatgtcccccaccagaagattatttgcatctgtgctacgatattatagggtatgctcaagggcttccgttggctcttgtggttttaggttcttttctatttggtagaggtgctgataagtgggcaagtgcaatagataggctaaagaacacaccagataaacgcattattgaggtgcttcggattagttttgatggactggatgaaaaagacaaagaaatattcctacatattgcttgcttttacaaggggaaggataaggatcgtgtgacacaaatattagactattgccagctaaaccctatcattggtttagatgttcttgctgatagatctctcataactatctccaacaacgaactgttgatgcatgatttgctacaagaaatgggttgggaaattgttcgtgaacagtctcccgaaaagccaggcaaacgtagtagattatggtgtcatgaagacatcaacaaggtgctgaagagaaataagggaacagattcaatcataggcatggtaatggagttgactgaattacaagtgtctgattggaagccagaagccttttcaaatttgtctcgacttagtcttctccatattcgtaatgtggaccttcccaaaagcctcacttgcctttctaattccttgagactcctcgaatggactgggtgtcccttaagatctctcccacaaaattttgaagcagatgaacttattgaacttaacctgtgccacagcaacattgaacagctttggaagggaacaaaggattttgacaagttgaagttcatcaaactctgccattctcgaaacattgtggagaccccagacctcacaggcgttcagaatcttgagagtttaaatcttgaaggatgtgagaatttggtaagaatccatcaatcccttggatttctcaaaaagcttattgtcctgaatcttaaaaactgcaaaagtctcgagagtctgccaaatagaattgaaatggaatctcttgaaacattaattctttctaactgctcaaaagttaagaagattcccgagtttgttggaaatatggaacgtttgttggtgctttgtcttgatgagactgccattgaggaactgcctgtttcaattgaacggctgactggccttgtgacattgaatctgagcaactgtagaaatcttgtttgtcttccaagcaacatcaataagttgaagtctgttgaaaatcttaatctttctggatgcttgaaactcgggaaacatcaggtaaatgtaggggagatggactgttttgaggaaactgatgtgtatagtgggtctgcaatagaaatgtcatctacccatgatctcataaaatatgtgagaggttcaatctctcataaatgcaaaatagtttggggatctttgaataagttcttgtcttctggattggagccaagagtgaatacagagccaatgagtttccgcttgcctatatctggtctgtgtaatttaacatatctgaacctgagtaattgcaatcttggtgaaggtgcatttgctaacgaatttggttactttccctctttggtgaccttgaatctaagtggaaacaattttgttcgtcttccttcaggcattggattgctttctaagcttgagaactttaacttggagaattgcaagaaccttcaagagttgtcagaccttccatcaaataacatactagatttaagggcagatggttgtacttcactggaatacttgtttgaggcatcaaatttgaacagattaaacaaatcatatttcaatttcatcaattgcttcaatctaaatggcaatgaaggatgcaataacatagcattaaaaatgctgaagacattcatgtataagggaatctctaataagagggaaacttttcaaattgtaattcctggaagtaatattccccagtggttcagccatcaggatgttgggtgttccttaagagtatctctacctgcacattggaataacaggcaatttttgggatttgctttgtgtgctgtttttgtactccatgagcatctgggggatgggctttttatagatgagttcaagaattttaatgcaactcatcatcttgtatgtggcctgaagcttgatggaggagaattgaaagtacatggagaattggaagtacatagagaattggaagtatctggcagacagcctgcatttcgctttagcgaagaattttgccaggttaaatcagatcaccagtggctattctatgtatctaaagataaatactttggtacagggtggtggcataacagttgcagtgagcttgagttcttatttaaaaccagagggccaggtctggaggtgaaggagtgtggagttcgtctgatatatgagcaagatgtgcaagagttgaaccaaaaaaacactcaatcgagcagtaggatgtctacttatgacaatccagttgcaggggaaaccagcggcactggtagcagaacttgcacccttgaagaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1192

Amino Acids

134.87

Weight (kDa)

5.99

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 737, 3061
AccB1I GGYRCC 1 cut(s) 345
AccI GTMKAC 2 cut(s) 542, 3506
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 9 cut(s) 70, 84, 343, 586, 620, 661, 868, 2539, 3540
AclI AACGTT 1 cut(s) 2149
AclWI GGATC 7 cut(s) 323, 336, 643, 656, 918, 1362, 2482
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 8 cut(s) 705, 1660, 1783, 1969, 2621, 2833, 3154, 3287
AcuI CTGAAG 5 cut(s) 131, 1589, 2670, 2948, 3209
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 2803, 3108, 3216, 3234, 3352
AfiI CCNNNNNNNGG 3 cut(s) 1400, 2552, 3527
AflII CTTAAG 2 cut(s) 1765, 3037
AhdI GACNNNNNGTC 1 cut(s) 1758
AjnI CCWGG 5 cut(s) 961, 1519, 2986, 3294, 3409
AjuI GAANNNNNNNTTGG 2 cut(s) 2708, 2740
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 6 cut(s) 1512, 1671, 1732, 1904, 2048, 2168
AlwI GGATC 7 cut(s) 323, 336, 643, 656, 918, 1362, 2482
AlwNI CAGNNNCTG 1 cut(s) 851
Ama87I CYCGRG 4 cut(s) 687, 2045, 2126, 2327
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 7 cut(s) 167, 292, 450, 769, 2218, 3184, 3407
ApeKI GCWGC 4 cut(s) 98, 182, 622, 851
ApoI RAATTY 8 cut(s) 705, 1660, 1783, 1969, 2621, 2833, 3154, 3287
AseI ATTAAT 1 cut(s) 2090
Asp700I GAANNNNTTC 8 cut(s) 580, 792, 1062, 1494, 1588, 2486, 2933, 2970
AspS9I GGNCC 4 cut(s) 292, 959, 1699, 3407
AsuHPI GGTGA 6 cut(s) 98, 115, 2612, 2656, 3302, 3433
AvaI CYCGRG 4 cut(s) 687, 2045, 2126, 2327
AvaII GGWCC 2 cut(s) 959, 1699
BalI TGGCCA 1 cut(s) 452
BamHI GGATCC 2 cut(s) 328, 648
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 7 cut(s) 304, 1557, 1670, 2255, 2487, 2672, 2936
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 4 cut(s) 85, 169, 634, 838
BceAI ACGGC 2 cut(s) 337, 2225
BcgI CGANNNNNNTGC 2 cut(s) 2026, 2060
BciT130I CCWGG 5 cut(s) 963, 1521, 2988, 3296, 3411
BcoDI GTCTC 6 cut(s) 1512, 1671, 1732, 1904, 2048, 2168
BfaI CTAG 3 cut(s) 198, 773, 2780
BfmI CTRYAG 1 cut(s) 2245
BfrI CTTAAG 2 cut(s) 1765, 3037
BfuAI ACCTGC 2 cut(s) 737, 3061
BglII AGATCT 3 cut(s) 200, 1424, 1769
BisI GCNGC 6 cut(s) 99, 183, 344, 623, 852, 3541
BlsI GCNGC 6 cut(s) 100, 184, 345, 624, 853, 3542
Bme1390I CCNGG 5 cut(s) 963, 1521, 2988, 3296, 3411
Bme18I GGWCC 2 cut(s) 959, 1699
BmeRI GACNNNNNGTC 1 cut(s) 1758
BmeT110I CYCGRG 4 cut(s) 687, 2045, 2126, 2327
BmgT120I GGNCC 4 cut(s) 292, 959, 1699, 3407
BmiI GGNNCC 4 cut(s) 330, 347, 650, 2508
BmrFI CCNGG 5 cut(s) 963, 1521, 2988, 3296, 3411
BmrI ACTGGG 2 cut(s) 1764, 2998
BmsI GCATC 7 cut(s) 1012, 1129, 1449, 2306, 2837, 2891, 3127
BmuI ACTGGG 2 cut(s) 1764, 2998
BpiI GAAGAC 7 cut(s) 304, 1557, 1670, 2255, 2487, 2672, 2936
BpmI CTGGAG 1 cut(s) 3437
BpuEI CTTGAG 5 cut(s) 1134, 1756, 1961, 2732, 3404
BsaBI GATNNNNATC 2 cut(s) 909, 1353
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1904
BsaJI CCNNGG 3 cut(s) 652, 962, 1993
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 1400, 2552, 3527
Bse1I ACTGG 9 cut(s) 956, 1296, 1759, 2221, 2814, 3004, 3313, 3521, 3550
Bse3DI GCAATG 1 cut(s) 2899
Bse8I GATNNNNATC 2 cut(s) 909, 1353
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 5 cut(s) 963, 1521, 2988, 3296, 3411
BseDI CCNNGG 3 cut(s) 652, 962, 1993
BseJI GATNNNNATC 2 cut(s) 909, 1353
BseLI CCNNNNNNNGG 3 cut(s) 1400, 2552, 3527
BseMI GCAATG 1 cut(s) 2899
BseMII CTCAG 3 cut(s) 435, 2228, 2573
BseNI ACTGG 9 cut(s) 956, 1296, 1759, 2221, 2814, 3004, 3313, 3521, 3550
BseRI GAGGAG 2 cut(s) 1733, 3216
BseXI GCAGC 4 cut(s) 85, 169, 634, 838
BseYI CCCAGC 1 cut(s) 465
BsgI GTGCAG 2 cut(s) 84, 3039
BshFI GGCC 7 cut(s) 169, 294, 452, 771, 2220, 3186, 3409
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 4 cut(s) 687, 2045, 2126, 2327
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 2 cut(s) 1083, 1746
BslI CCNNNNNNNGG 3 cut(s) 1400, 2552, 3527
BsmAI GTCTC 6 cut(s) 1512, 1671, 1732, 1904, 2048, 2168
BsmFI GGGAC 2 cut(s) 1083, 1746
BsmI GAATGC 2 cut(s) 439, 588
BsnI GGCC 7 cut(s) 169, 294, 452, 771, 2220, 3186, 3409
Bso31I GGTCTC 1 cut(s) 1904
BsoBI CYCGRG 4 cut(s) 687, 2045, 2126, 2327
Bsp1286I GDGCHC 1 cut(s) 369
Bsp13I TCCGGA 1 cut(s) 421
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 9 cut(s) 70, 84, 343, 586, 620, 661, 868, 2539, 3540
BspANI GGCC 7 cut(s) 169, 294, 452, 771, 2220, 3186, 3409
BspCNI CTCAG 3 cut(s) 436, 2229, 2574
BspEI TCCGGA 1 cut(s) 421
BspHI TCATGA 2 cut(s) 592, 1546
BspLI GGNNCC 4 cut(s) 330, 347, 650, 2508
BspMI ACCTGC 2 cut(s) 737, 3061
BspPI GGATC 7 cut(s) 323, 336, 643, 656, 918, 1362, 2482
BspT107I GGYRCC 1 cut(s) 345
BspTI CTTAAG 2 cut(s) 1765, 3037
BspTNI GGTCTC 1 cut(s) 1904
BsrDI GCAATG 1 cut(s) 2899
BsrI ACTGG 9 cut(s) 956, 1296, 1759, 2221, 2814, 3004, 3313, 3521, 3550
BssECI CCNNGG 3 cut(s) 652, 962, 1993
BssNAI GTATAC 1 cut(s) 543
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 652, 1993
Bst1107I GTATAC 1 cut(s) 543
Bst2UI CCWGG 5 cut(s) 963, 1521, 2988, 3296, 3411
Bst4CI ACNGT 6 cut(s) 1052, 1455, 1506, 2246, 2363, 3371
Bst6I CTCTTC 3 cut(s) 19, 186, 1565
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 1765, 3037
BstAPI GCANNNNNTGC 3 cut(s) 1468, 3460, 3558
BstC8I GCNNGC 5 cut(s) 659, 1330, 1385, 2543, 3267
BstDEI CTNAG 7 cut(s) 47, 444, 1673, 2237, 2582, 2657, 2706
BstDSI CCRYGG 1 cut(s) 652
BstEII GGTNACC 1 cut(s) 2644
BstMAI GTCTC 6 cut(s) 1512, 1671, 1732, 1904, 2048, 2168
BstMWI GCNNNNNNNGC 8 cut(s) 663, 1468, 1719, 2707, 3095, 3460, 3549, 3558
BstNI CCWGG 5 cut(s) 963, 1521, 2988, 3296, 3411
BstNSI RCATGY 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 2644
BstSCI CCNGG 5 cut(s) 961, 1519, 2986, 3294, 3409
BstSFI CTRYAG 1 cut(s) 2245
BstV1I GCAGC 4 cut(s) 85, 169, 634, 838
BstV2I GAAGAC 7 cut(s) 304, 1557, 1670, 2255, 2487, 2672, 2936
BstX2I RGATCY 6 cut(s) 200, 328, 648, 1424, 1769, 2474
BstYI RGATCY 6 cut(s) 200, 328, 648, 1424, 1769, 2474
BstZ17I GTATAC 1 cut(s) 543
BsuRI GGCC 7 cut(s) 169, 294, 452, 771, 2220, 3186, 3409
BtgI CCRYGG 1 cut(s) 652
BtsI GCAGTG 1 cut(s) 3382
BtsIMutI CAGTG 5 cut(s) 2807, 3011, 3320, 3382, 3543
BveI ACCTGC 2 cut(s) 737, 3061
Cac8I GCNNGC 5 cut(s) 659, 1330, 1385, 2543, 3267
CaiI CAGNNNCTG 1 cut(s) 851
CciI TCATGA 2 cut(s) 592, 1546
Cfr13I GGNCC 4 cut(s) 292, 959, 1699, 3407
Csp6I GTAC 5 cut(s) 2802, 3107, 3215, 3233, 3351
CviQI GTAC 5 cut(s) 2802, 3107, 3215, 3233, 3351
DdeI CTNAG 7 cut(s) 47, 444, 1673, 2237, 2582, 2657, 2706
DraI TTTAAA 2 cut(s) 1950, 3397
DriI GACNNNNNGTC 1 cut(s) 1758
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 19, 186, 1565
Eam1105I GACNNNNNGTC 1 cut(s) 1758
EarI CTCTTC 3 cut(s) 19, 186, 1565
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 2 cut(s) 652, 1993
Eco147I AGGCCT 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 1904
Eco47I GGWCC 2 cut(s) 959, 1699
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 5 cut(s) 131, 1589, 2670, 2948, 3209
Eco88I CYCGRG 4 cut(s) 687, 2045, 2126, 2327
Eco91I GGTNACC 1 cut(s) 2644
EcoICRI GAGCTC 1 cut(s) 367
EcoO65I GGTNACC 1 cut(s) 2644
EcoRII CCWGG 5 cut(s) 961, 1519, 2986, 3294, 3409
EcoT14I CCWWGG 2 cut(s) 652, 1993
EcoT22I ATGCAT 2 cut(s) 281, 1464
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 652, 1993
FalI AAGNNNNNCTT 4 cut(s) 777, 809, 1702, 1734
FaqI GGGAC 2 cut(s) 1083, 1746
FauI CCCGC 3 cut(s) 77, 593, 654
FblI GTMKAC 2 cut(s) 542, 3506
Fnu4HI GCNGC 6 cut(s) 99, 183, 344, 623, 852, 3541
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 6 cut(s) 99, 183, 344, 623, 852, 3541
FspBI CTAG 3 cut(s) 198, 773, 2780
GluI GCNGC 6 cut(s) 99, 183, 344, 623, 852, 3541
GsaI CCCAGC 1 cut(s) 469
GsuI CTGGAG 1 cut(s) 3437
HaeIII GGCC 7 cut(s) 169, 294, 452, 771, 2220, 3186, 3409
HapII CCGG 1 cut(s) 422
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 5 cut(s) 9, 441, 559, 918, 1617
HindII GTYRAC 5 cut(s) 9, 441, 559, 918, 1617
HindIII AAGCTT 3 cut(s) 2009, 2708, 3191
HpaII CCGG 1 cut(s) 422
HphI GGTGA 6 cut(s) 98, 115, 2612, 2656, 3302, 3433
Hpy166II GTNNAC 9 cut(s) 9, 441, 543, 559, 918, 1502, 1617, 1699, 3507
Hpy8I GTNNAC 9 cut(s) 9, 441, 543, 559, 918, 1502, 1617, 1699, 3507
Hpy99I CGWCG 1 cut(s) 24
HpyCH4III ACNGT 6 cut(s) 1052, 1455, 1506, 2246, 2363, 3371
HpyCH4IV ACGT 2 cut(s) 1528, 2149
HpyF10VI GCNNNNNNNGC 8 cut(s) 663, 1468, 1719, 2707, 3095, 3460, 3549, 3558
HpyF3I CTNAG 7 cut(s) 47, 444, 1673, 2237, 2582, 2657, 2706
HpySE526I ACGT 2 cut(s) 1528, 2149
Hsp92I GRCGYC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 421
LmnI GCTCC 2 cut(s) 848, 2506
Lsp1109I GCAGC 4 cut(s) 85, 169, 634, 838
LweI GCATC 7 cut(s) 1012, 1129, 1449, 2306, 2837, 2891, 3127
MaeI CTAG 3 cut(s) 198, 773, 2780
MaeII ACGT 2 cut(s) 1528, 2149
MaeIII GTNAC 5 cut(s) 121, 1360, 2224, 2627, 2644
MfeI CAATTG 3 cut(s) 186, 2202, 2872
MflI RGATCY 6 cut(s) 200, 328, 648, 1424, 1769, 2474
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 452
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 3 cut(s) 203, 1734, 2059
MmeI TCCRAC 2 cut(s) 1467, 2116
Mox20I TGGCCA 1 cut(s) 452
Mph1103I ATGCAT 2 cut(s) 281, 1464
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 8 cut(s) 580, 792, 1062, 1494, 1588, 2486, 2933, 2970
MscI TGGCCA 1 cut(s) 452
MslI CAYNNNNRTG 5 cut(s) 128, 575, 1601, 1607, 3021
Msp20I TGGCCA 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 3540
MspCI CTTAAG 2 cut(s) 1765, 3037
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 5 cut(s) 963, 1521, 2988, 3296, 3411
MunI CAATTG 3 cut(s) 186, 2202, 2872
Mva1269I GAATGC 2 cut(s) 439, 588
MvaI CCWGG 5 cut(s) 963, 1521, 2988, 3296, 3411
MwoI GCNNNNNNNGC 8 cut(s) 663, 1468, 1719, 2707, 3095, 3460, 3549, 3558
NcoI CCATGG 1 cut(s) 652
NlaIV GGNNCC 4 cut(s) 330, 347, 650, 2508
NmuCI GTSAC 4 cut(s) 121, 1360, 2224, 2644
NsiI ATGCAT 2 cut(s) 281, 1464
NspI RCATGY 1 cut(s) 661
PaeI GCATGC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 2045
PagI TCATGA 2 cut(s) 592, 1546
PceI AGGCCT 1 cut(s) 169
PctI GAATGC 2 cut(s) 439, 588
PdmI GAANNNNTTC 8 cut(s) 580, 792, 1062, 1494, 1588, 2486, 2933, 2970
PflFI GACNNNGTC 1 cut(s) 1674
PfoI TCCNGGA 1 cut(s) 2986
PkrI GCNGC 6 cut(s) 100, 184, 345, 624, 853, 3542
PleI GAGTC 3 cut(s) 202, 1734, 2058
PpsI GAGTC 3 cut(s) 202, 1734, 2058
PshBI ATTAAT 1 cut(s) 2090
Psp124BI GAGCTC 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 2149
Psp6I CCWGG 5 cut(s) 961, 1519, 2986, 3294, 3409
PspEI GGTNACC 1 cut(s) 2644
PspFI CCCAGC 1 cut(s) 465
PspGI CCWGG 5 cut(s) 961, 1519, 2986, 3294, 3409
PspN4I GGNNCC 4 cut(s) 330, 347, 650, 2508
PspPI GGNCC 4 cut(s) 292, 959, 1699, 3407
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 6 cut(s) 200, 328, 648, 1424, 1769, 2474
PsyI GACNNNGTC 1 cut(s) 1674
RsaI GTAC 5 cut(s) 2803, 3108, 3216, 3234, 3352
RsaNI GTAC 5 cut(s) 2802, 3107, 3215, 3233, 3351
RseI CAYNNNNRTG 5 cut(s) 128, 575, 1601, 1607, 3021
SacI GAGCTC 1 cut(s) 369
SatI GCNGC 6 cut(s) 99, 183, 344, 623, 852, 3541
Sau96I GGNCC 4 cut(s) 292, 959, 1699, 3407
SchI GAGTC 3 cut(s) 203, 1734, 2059
ScrFI CCNGG 5 cut(s) 963, 1521, 2988, 3296, 3411
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 7 cut(s) 1012, 1129, 1449, 2306, 2837, 2891, 3127
SfcI CTRYAG 1 cut(s) 2245
Sfr274I CTCGAG 1 cut(s) 2045
SinI GGWCC 2 cut(s) 959, 1699
SlaI CTCGAG 1 cut(s) 2045
SmiMI CAYNNNNRTG 5 cut(s) 128, 575, 1601, 1607, 3021
SmlI CTYRAG 8 cut(s) 1149, 1735, 1765, 1940, 2045, 2711, 3037, 3383
SmoI CTYRAG 8 cut(s) 1149, 1735, 1765, 1940, 2045, 2711, 3037, 3383
SphI GCATGC 1 cut(s) 661
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 9 cut(s) 70, 84, 343, 586, 620, 661, 868, 2539, 3540
SspI AATATT 3 cut(s) 1314, 1371, 2998
SspMI CTAG 3 cut(s) 198, 773, 2780
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 5 cut(s) 961, 1519, 2986, 3294, 3409
StyI CCWWGG 2 cut(s) 652, 1993
TaaI ACNGT 6 cut(s) 1052, 1455, 1506, 2246, 2363, 3371
TaiI ACGT 2 cut(s) 1531, 2152
TaqI TCGA 6 cut(s) 369, 1669, 1746, 1897, 2046, 3491
TaqII GACCGA 1 cut(s) 738
TatI WGTACW 4 cut(s) 2801, 3106, 3214, 3232
TauI GCSGC 2 cut(s) 346, 3543
TscAI CASTG 5 cut(s) 2814, 3011, 3320, 3382, 3550
TseFI GTSAC 4 cut(s) 121, 1360, 2224, 2644
TseI GCWGC 4 cut(s) 98, 182, 622, 851
Tsp45I GTSAC 4 cut(s) 121, 1360, 2224, 2644
TspGWI ACGGA 3 cut(s) 238, 526, 1149
TspRI CASTG 5 cut(s) 2814, 3011, 3320, 3382, 3550
Tth111I GACNNNGTC 1 cut(s) 1674
Vha464I CTTAAG 2 cut(s) 1765, 3037
VpaK11BI GGWCC 2 cut(s) 959, 1699
VspI ATTAAT 1 cut(s) 2090
XapI RAATTY 8 cut(s) 705, 1660, 1783, 1969, 2621, 2833, 3154, 3287
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 2 cut(s) 1991, 3023
XhoI CTCGAG 1 cut(s) 2045
XmiI GTMKAC 2 cut(s) 542, 3506
XmnI GAANNNNTTC 8 cut(s) 580, 792, 1062, 1494, 1588, 2486, 2933, 2970
XspI CTAG 3 cut(s) 198, 773, 2780
Zsp2I ATGCAT 2 cut(s) 281, 1464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.