TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 182 - 331 | 8.5e-19 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 937 |
| Acc36I | ACCTGC | 2 cut(s) | 622, 937 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 688 |
| AciI | CCGC | 1 cut(s) | 121 |
| AclWI | GGATC | 3 cut(s) | 48, 61, 843 |
| AcsI | RAATTY | 4 cut(s) | 203, 394, 710, 815 |
| AcuI | CTGAAG | 3 cut(s) | 252, 509, 773 |
| AfaI | GTAC | 2 cut(s) | 364, 880 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 134, 688, 1076 |
| AjnI | CCWGG | 2 cut(s) | 547, 937 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 290, 322 |
| AluBI | AGCT | 3 cut(s) | 292, 608, 757 |
| AluI | AGCT | 3 cut(s) | 292, 608, 757 |
| Alw21I | GWGCWC | 1 cut(s) | 681 |
| Alw26I | GTCTC | 2 cut(s) | 316, 1038 |
| AlwI | GGATC | 3 cut(s) | 48, 61, 843 |
| AoxI | GGCC | 1 cut(s) | 935 |
| ApoI | RAATTY | 4 cut(s) | 203, 394, 710, 815 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 494, 531 |
| AspS9I | GGNCC | 2 cut(s) | 340, 935 |
| AsuHPI | GGTGA | 4 cut(s) | 238, 830, 875, 961 |
| AsuII | TTCGAA | 2 cut(s) | 480, 623 |
| AvaII | GGWCC | 1 cut(s) | 340 |
| BamHI | GGATCC | 1 cut(s) | 53 |
| BbsI | GAAGAC | 2 cut(s) | 254, 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 681 |
| BccI | CCATC | 5 cut(s) | 355, 585, 682, 690, 755 |
| BciT130I | CCWGG | 2 cut(s) | 549, 939 |
| BcoDI | GTCTC | 2 cut(s) | 316, 1038 |
| BfmI | CTRYAG | 1 cut(s) | 944 |
| BfuAI | ACCTGC | 2 cut(s) | 622, 937 |
| Bme1390I | CCNGG | 2 cut(s) | 549, 939 |
| Bme18I | GGWCC | 1 cut(s) | 340 |
| BmgT120I | GGNCC | 2 cut(s) | 340, 935 |
| BmiI | GGNNCC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 2 cut(s) | 549, 939 |
| BmsI | GCATC | 3 cut(s) | 376, 398, 452 |
| BpiI | GAAGAC | 2 cut(s) | 254, 497 |
| Bpu10I | CCTNAGC | 1 cut(s) | 288 |
| Bpu14I | TTCGAA | 2 cut(s) | 480, 623 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| BsaWI | WCCGGW | 1 cut(s) | 1069 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 134, 688, 1076 |
| Bse1I | ACTGG | 2 cut(s) | 1086, 1099 |
| BseBI | CCWGG | 2 cut(s) | 549, 939 |
| BseGI | GGATG | 1 cut(s) | 467 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 134, 688, 1076 |
| BseMII | CTCAG | 2 cut(s) | 155, 555 |
| BseNI | ACTGG | 2 cut(s) | 1086, 1099 |
| BsgI | GTGCAG | 1 cut(s) | 600 |
| BshFI | GGCC | 1 cut(s) | 937 |
| BsiHKAI | GWGCWC | 1 cut(s) | 681 |
| BsiSI | CCGG | 2 cut(s) | 1003, 1070 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 134, 688, 1076 |
| BsmAI | GTCTC | 2 cut(s) | 316, 1038 |
| BsmI | GAATGC | 1 cut(s) | 476 |
| BsnI | GGCC | 1 cut(s) | 937 |
| Bsp119I | TTCGAA | 2 cut(s) | 480, 623 |
| Bsp1286I | GDGCHC | 1 cut(s) | 681 |
| Bsp143I | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| BspACI | CCGC | 1 cut(s) | 121 |
| BspANI | GGCC | 1 cut(s) | 937 |
| BspCNI | CTCAG | 2 cut(s) | 156, 556 |
| BspLI | GGNNCC | 1 cut(s) | 55 |
| BspMAI | CTGCAG | 1 cut(s) | 948 |
| BspMI | ACCTGC | 2 cut(s) | 622, 937 |
| BspPI | GGATC | 3 cut(s) | 48, 61, 843 |
| BspT104I | TTCGAA | 2 cut(s) | 480, 623 |
| BsrI | ACTGG | 2 cut(s) | 1086, 1099 |
| BssMI | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| Bst2UI | CCWGG | 2 cut(s) | 549, 939 |
| Bst4CI | ACNGT | 3 cut(s) | 632, 899, 905 |
| Bst6I | CTCTTC | 1 cut(s) | 760 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1107 |
| BstBI | TTCGAA | 2 cut(s) | 480, 623 |
| BstC8I | GCNNGC | 3 cut(s) | 125, 795, 1112 |
| BstDEI | CTNAG | 4 cut(s) | 164, 239, 288, 564 |
| BstEII | GGTNACC | 1 cut(s) | 226 |
| BstF5I | GGATG | 1 cut(s) | 467 |
| BstKTI | GATC | 5 cut(s) | 19, 56, 74, 407, 838 |
| BstMAI | GTCTC | 2 cut(s) | 316, 1038 |
| BstMBI | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 289, 614, 656, 943, 988, 1098, 1107 |
| BstNI | CCWGG | 2 cut(s) | 549, 939 |
| BstPI | GGTNACC | 1 cut(s) | 226 |
| BstSCI | CCNGG | 2 cut(s) | 547, 937 |
| BstSFI | CTRYAG | 1 cut(s) | 944 |
| BstV2I | GAAGAC | 2 cut(s) | 254, 497 |
| BstX2I | RGATCY | 1 cut(s) | 53 |
| BstYI | RGATCY | 1 cut(s) | 53 |
| BsuRI | GGCC | 1 cut(s) | 937 |
| BtsCI | GGATG | 1 cut(s) | 467 |
| BtsIMutI | CAGTG | 3 cut(s) | 368, 1092, 1093 |
| BveI | ACCTGC | 2 cut(s) | 622, 937 |
| Cac8I | GCNNGC | 3 cut(s) | 125, 795, 1112 |
| Cfr13I | GGNCC | 2 cut(s) | 340, 935 |
| Csp6I | GTAC | 2 cut(s) | 363, 879 |
| CviAII | CATG | 3 cut(s) | 14, 50, 499 |
| CviJI | RGCY | 9 cut(s) | 292, 576, 608, 697, 757, 793, 847, 937, 1002 |
| CviKI_1 | RGCY | 9 cut(s) | 292, 576, 608, 697, 757, 793, 847, 937, 1002 |
| CviQI | GTAC | 2 cut(s) | 363, 879 |
| DdeI | CTNAG | 4 cut(s) | 164, 239, 288, 564 |
| DpnI | GATC | 5 cut(s) | 18, 55, 73, 406, 837 |
| DpnII | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| DraI | TTTAAA | 1 cut(s) | 78 |
| Eam1104I | CTCTTC | 1 cut(s) | 760 |
| EarI | CTCTTC | 1 cut(s) | 760 |
| Eco47I | GGWCC | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 3 cut(s) | 252, 509, 773 |
| Eco91I | GGTNACC | 1 cut(s) | 226 |
| EcoO65I | GGTNACC | 1 cut(s) | 226 |
| EcoRI | GAATTC | 1 cut(s) | 710 |
| EcoRII | CCWGG | 2 cut(s) | 547, 937 |
| EcoT22I | ATGCAT | 1 cut(s) | 391 |
| FaeI | CATG | 3 cut(s) | 17, 53, 502 |
| FatI | CATG | 3 cut(s) | 13, 49, 498 |
| FokI | GGATG | 1 cut(s) | 474 |
| HaeIII | GGCC | 1 cut(s) | 937 |
| HapII | CCGG | 2 cut(s) | 1003, 1070 |
| Hin1II | CATG | 3 cut(s) | 17, 53, 502 |
| HindIII | AAGCTT | 1 cut(s) | 290 |
| HinfI | GANTC | 3 cut(s) | 235, 510, 963 |
| HpaII | CCGG | 2 cut(s) | 1003, 1070 |
| HphI | GGTGA | 4 cut(s) | 238, 830, 875, 961 |
| Hpy188I | TCNGA | 6 cut(s) | 159, 340, 582, 687, 835, 972 |
| Hpy188III | TCNNGA | 2 cut(s) | 563, 715 |
| HpyAV | CCTTC | 7 cut(s) | 102, 228, 276, 353, 546, 946, 1070 |
| HpyCH4III | ACNGT | 3 cut(s) | 632, 899, 905 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 289, 614, 656, 943, 988, 1098, 1107 |
| HpyF3I | CTNAG | 4 cut(s) | 164, 239, 288, 564 |
| Hsp92II | CATG | 3 cut(s) | 17, 53, 502 |
| Kzo9I | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| LweI | GCATC | 3 cut(s) | 376, 398, 452 |
| MaeIII | GTNAC | 3 cut(s) | 209, 226, 899 |
| MalI | GATC | 5 cut(s) | 18, 55, 73, 406, 837 |
| MboI | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| MboII | GAAGA | 4 cut(s) | 254, 502, 777, 824 |
| MfeI | CAATTG | 1 cut(s) | 433 |
| MflI | RGATCY | 1 cut(s) | 53 |
| MhlI | GDGCHC | 1 cut(s) | 681 |
| MlyI | GAGTC | 1 cut(s) | 972 |
| MmeI | TCCRAC | 2 cut(s) | 318, 813 |
| MnlI | CCTC | 3 cut(s) | 29, 926, 1036 |
| Mph1103I | ATGCAT | 1 cut(s) | 391 |
| MroXI | GAANNNNTTC | 2 cut(s) | 494, 531 |
| MseI | TTAA | 6 cut(s) | 77, 149, 303, 327, 723, 828 |
| MslI | CAYNNNNRTG | 1 cut(s) | 582 |
| MspI | CCGG | 2 cut(s) | 1003, 1070 |
| MspR9I | CCNGG | 2 cut(s) | 549, 939 |
| MunI | CAATTG | 1 cut(s) | 433 |
| Mva1269I | GAATGC | 1 cut(s) | 476 |
| MvaI | CCWGG | 2 cut(s) | 549, 939 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 289, 614, 656, 943, 988, 1098, 1107 |
| NdeII | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| NlaIII | CATG | 3 cut(s) | 17, 53, 502 |
| NlaIV | GGNNCC | 1 cut(s) | 55 |
| NmuCI | GTSAC | 1 cut(s) | 226 |
| NsiI | ATGCAT | 1 cut(s) | 391 |
| NspV | TTCGAA | 2 cut(s) | 480, 623 |
| PaqCI | CACCTGC | 1 cut(s) | 937 |
| PctI | GAATGC | 1 cut(s) | 476 |
| PdmI | GAANNNNTTC | 2 cut(s) | 494, 531 |
| PfeI | GAWTC | 2 cut(s) | 235, 510 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 688 |
| PfoI | TCCNGGA | 1 cut(s) | 547 |
| PleI | GAGTC | 1 cut(s) | 971 |
| PpsI | GAGTC | 1 cut(s) | 971 |
| Psp6I | CCWGG | 2 cut(s) | 547, 937 |
| PspEI | GGTNACC | 1 cut(s) | 226 |
| PspGI | CCWGG | 2 cut(s) | 547, 937 |
| PspN4I | GGNNCC | 1 cut(s) | 55 |
| PspPI | GGNCC | 2 cut(s) | 340, 935 |
| PstI | CTGCAG | 1 cut(s) | 948 |
| PsuI | RGATCY | 1 cut(s) | 53 |
| RsaI | GTAC | 2 cut(s) | 364, 880 |
| RsaNI | GTAC | 2 cut(s) | 363, 879 |
| RseI | CAYNNNNRTG | 1 cut(s) | 582 |
| SaqAI | TTAA | 6 cut(s) | 77, 149, 303, 327, 723, 828 |
| Sau3AI | GATC | 5 cut(s) | 16, 53, 71, 404, 835 |
| Sau96I | GGNCC | 2 cut(s) | 340, 935 |
| SchI | GAGTC | 1 cut(s) | 972 |
| ScrFI | CCNGG | 2 cut(s) | 549, 939 |
| SduI | GDGCHC | 1 cut(s) | 681 |
| SfaNI | GCATC | 3 cut(s) | 376, 398, 452 |
| SfcI | CTRYAG | 1 cut(s) | 944 |
| SfuI | TTCGAA | 2 cut(s) | 480, 623 |
| SinI | GGWCC | 1 cut(s) | 340 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 582 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| SsiI | CCGC | 1 cut(s) | 121 |
| SspI | AATATT | 1 cut(s) | 559 |
| StyD4I | CCNGG | 2 cut(s) | 547, 937 |
| TaaI | ACNGT | 3 cut(s) | 632, 899, 905 |
| TaqI | TCGA | 3 cut(s) | 480, 623, 759 |
| TatI | WGTACW | 1 cut(s) | 362 |
| TfiI | GAWTC | 2 cut(s) | 235, 510 |
| Tru1I | TTAA | 6 cut(s) | 77, 149, 303, 327, 723, 828 |
| Tru9I | TTAA | 6 cut(s) | 77, 149, 303, 327, 723, 828 |
| TscAI | CASTG | 3 cut(s) | 375, 1093, 1099 |
| TseFI | GTSAC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 4 cut(s) | 38, 418, 487, 723 |
| TspGWI | ACGGA | 1 cut(s) | 956 |
| TspRI | CASTG | 3 cut(s) | 375, 1093, 1099 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 688 |
| VpaK11BI | GGWCC | 1 cut(s) | 340 |
| XapI | RAATTY | 4 cut(s) | 203, 394, 710, 815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 584 |
| XmnI | GAANNNNTTC | 2 cut(s) | 494, 531 |
| Zsp2I | ATGCAT | 1 cut(s) | 391 |