TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 21 - 170 | 4e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 227, 332 |
| AcuI | CTGAAG | 2 cut(s) | 26, 482 |
| AfaI | GTAC | 2 cut(s) | 186, 397 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 137 |
| AgeI | ACCGGT | 1 cut(s) | 584 |
| AgsI | TTSAA | 4 cut(s) | 232, 271, 517, 617 |
| AjnI | CCWGG | 2 cut(s) | 64, 339 |
| AluBI | AGCT | 4 cut(s) | 154, 214, 274, 427 |
| AluI | AGCT | 4 cut(s) | 154, 214, 274, 427 |
| Alw26I | GTCTC | 2 cut(s) | 491, 555 |
| AoxI | GGCC | 1 cut(s) | 452 |
| ApeKI | GCWGC | 1 cut(s) | 597 |
| ApoI | RAATTY | 2 cut(s) | 227, 332 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 514, 546 |
| AsiGI | ACCGGT | 1 cut(s) | 584 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 11 |
| AspS9I | GGNCC | 1 cut(s) | 452 |
| AsuC2I | CCSGG | 1 cut(s) | 456 |
| AsuHPI | GGTGA | 2 cut(s) | 347, 478 |
| BauI | CACGAG | 1 cut(s) | 378 |
| BbsI | GAAGAC | 1 cut(s) | 14 |
| BbvI | GCAGC | 1 cut(s) | 609 |
| BccI | CCATC | 3 cut(s) | 98, 102, 272 |
| BciT130I | CCWGG | 2 cut(s) | 66, 341 |
| BcnI | CCSGG | 1 cut(s) | 456 |
| BcoDI | GTCTC | 2 cut(s) | 491, 555 |
| BisI | GCNGC | 1 cut(s) | 598 |
| BlsI | GCNGC | 1 cut(s) | 599 |
| Bme1390I | CCNGG | 3 cut(s) | 66, 341, 456 |
| BmgT120I | GGNCC | 1 cut(s) | 452 |
| BmrFI | CCNGG | 3 cut(s) | 66, 341, 456 |
| BpiI | GAAGAC | 1 cut(s) | 14 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 471, 503 |
| BpuEI | CTTGAG | 1 cut(s) | 449 |
| BpuMI | CCSGG | 1 cut(s) | 456 |
| BsaWI | WCCGGW | 1 cut(s) | 584 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 137 |
| Bse118I | RCCGGY | 1 cut(s) | 584 |
| Bse1I | ACTGG | 2 cut(s) | 528, 598 |
| BseBI | CCWGG | 2 cut(s) | 66, 341 |
| BseGI | GGATG | 1 cut(s) | 369 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 137 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseNI | ACTGG | 2 cut(s) | 528, 598 |
| BseXI | GCAGC | 1 cut(s) | 609 |
| BsgI | GTGCAG | 1 cut(s) | 117 |
| BshFI | GGCC | 1 cut(s) | 454 |
| BshTI | ACCGGT | 1 cut(s) | 584 |
| BsiSI | CCGG | 2 cut(s) | 455, 585 |
| BslFI | GGGAC | 1 cut(s) | 604 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 137 |
| BsmAI | GTCTC | 2 cut(s) | 491, 555 |
| BsmBI | CGTCTC | 1 cut(s) | 491 |
| BsmFI | GGGAC | 1 cut(s) | 604 |
| BsnI | GGCC | 1 cut(s) | 454 |
| Bsp143I | GATC | 1 cut(s) | 352 |
| BspANI | GGCC | 1 cut(s) | 454 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BsrFI | RCCGGY | 1 cut(s) | 584 |
| BsrI | ACTGG | 2 cut(s) | 528, 598 |
| BssAI | RCCGGY | 1 cut(s) | 584 |
| BssMI | GATC | 1 cut(s) | 352 |
| BssSI | CACGAG | 1 cut(s) | 378 |
| Bst2BI | CACGAG | 1 cut(s) | 378 |
| Bst2UI | CCWGG | 2 cut(s) | 66, 341 |
| Bst4CI | ACNGT | 2 cut(s) | 149, 416 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 505, 606 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 1 cut(s) | 81 |
| BstF5I | GGATG | 1 cut(s) | 369 |
| BstKTI | GATC | 1 cut(s) | 355 |
| BstMAI | GTCTC | 2 cut(s) | 491, 555 |
| BstMBI | GATC | 1 cut(s) | 352 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 173, 505, 606 |
| BstNI | CCWGG | 2 cut(s) | 66, 341 |
| BstSCI | CCNGG | 3 cut(s) | 64, 339, 454 |
| BstV1I | GCAGC | 1 cut(s) | 609 |
| BstV2I | GAAGAC | 1 cut(s) | 14 |
| BsuRI | GGCC | 1 cut(s) | 454 |
| BtsCI | GGATG | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| Cfr10I | RCCGGY | 1 cut(s) | 584 |
| Cfr13I | GGNCC | 1 cut(s) | 452 |
| Csp6I | GTAC | 2 cut(s) | 185, 396 |
| CspAI | ACCGGT | 1 cut(s) | 584 |
| CviAII | CATG | 3 cut(s) | 16, 137, 191 |
| CviJI | RGCY | 7 cut(s) | 93, 154, 214, 274, 310, 427, 454 |
| CviKI_1 | RGCY | 7 cut(s) | 93, 154, 214, 274, 310, 427, 454 |
| CviQI | GTAC | 2 cut(s) | 185, 396 |
| DdeI | CTNAG | 1 cut(s) | 81 |
| DpnI | GATC | 1 cut(s) | 354 |
| DpnII | GATC | 1 cut(s) | 352 |
| DraI | TTTAAA | 1 cut(s) | 442 |
| Eco57I | CTGAAG | 2 cut(s) | 26, 482 |
| EcoRI | GAATTC | 1 cut(s) | 227 |
| EcoRII | CCWGG | 2 cut(s) | 64, 339 |
| Esp3I | CGTCTC | 1 cut(s) | 491 |
| FaeI | CATG | 3 cut(s) | 19, 140, 194 |
| FaqI | GGGAC | 1 cut(s) | 604 |
| FatI | CATG | 3 cut(s) | 15, 136, 190 |
| Fnu4HI | GCNGC | 1 cut(s) | 598 |
| FokI | GGATG | 1 cut(s) | 376 |
| Fsp4HI | GCNGC | 1 cut(s) | 598 |
| GluI | GCNGC | 1 cut(s) | 598 |
| HaeIII | GGCC | 1 cut(s) | 454 |
| HapII | CCGG | 2 cut(s) | 455, 585 |
| Hin1II | CATG | 3 cut(s) | 19, 140, 194 |
| HindIII | AAGCTT | 2 cut(s) | 212, 272 |
| HinfI | GANTC | 3 cut(s) | 27, 480, 620 |
| HpaII | CCGG | 2 cut(s) | 455, 585 |
| HphI | GGTGA | 2 cut(s) | 347, 478 |
| Hpy188I | TCNGA | 3 cut(s) | 99, 352, 462 |
| Hpy188III | TCNNGA | 3 cut(s) | 80, 232, 380 |
| HpyAV | CCTTC | 2 cut(s) | 457, 463 |
| HpyCH4III | ACNGT | 2 cut(s) | 149, 416 |
| HpyCH4V | TGCA | 7 cut(s) | 134, 245, 314, 420, 508, 575, 609 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 173, 505, 606 |
| HpyF3I | CTNAG | 1 cut(s) | 81 |
| Hsp92II | CATG | 3 cut(s) | 19, 140, 194 |
| Kzo9I | GATC | 1 cut(s) | 352 |
| Lsp1109I | GCAGC | 1 cut(s) | 609 |
| MalI | GATC | 1 cut(s) | 354 |
| MboI | GATC | 1 cut(s) | 352 |
| MboII | GAAGA | 4 cut(s) | 19, 119, 294, 341 |
| MluCI | AATT | 5 cut(s) | 54, 60, 227, 287, 332 |
| MlyI | GAGTC | 1 cut(s) | 489 |
| MnlI | CCTC | 2 cut(s) | 443, 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 11 |
| MseI | TTAA | 3 cut(s) | 240, 345, 441 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 204 |
| MspI | CCGG | 2 cut(s) | 455, 585 |
| MspR9I | CCNGG | 3 cut(s) | 66, 341, 456 |
| MvaI | CCWGG | 2 cut(s) | 66, 341 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 173, 505, 606 |
| NciI | CCSGG | 1 cut(s) | 456 |
| NdeII | GATC | 1 cut(s) | 352 |
| NlaIII | CATG | 3 cut(s) | 19, 140, 194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 2 cut(s) | 27, 620 |
| PfoI | TCCNGGA | 1 cut(s) | 64 |
| PinAI | ACCGGT | 1 cut(s) | 584 |
| PkrI | GCNGC | 1 cut(s) | 599 |
| PleI | GAGTC | 1 cut(s) | 488 |
| PpsI | GAGTC | 1 cut(s) | 488 |
| Psp6I | CCWGG | 2 cut(s) | 64, 339 |
| PspGI | CCWGG | 2 cut(s) | 64, 339 |
| PspPI | GGNCC | 1 cut(s) | 452 |
| RsaI | GTAC | 2 cut(s) | 186, 397 |
| RsaNI | GTAC | 2 cut(s) | 185, 396 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 204 |
| SaqAI | TTAA | 3 cut(s) | 240, 345, 441 |
| SatI | GCNGC | 1 cut(s) | 598 |
| Sau3AI | GATC | 1 cut(s) | 352 |
| Sau96I | GGNCC | 1 cut(s) | 452 |
| SchI | GAGTC | 1 cut(s) | 489 |
| ScrFI | CCNGG | 3 cut(s) | 66, 341, 456 |
| SetI | ASST | 7 cut(s) | 156, 216, 276, 345, 360, 429, 468 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 204 |
| SmlI | CTYRAG | 1 cut(s) | 428 |
| SmoI | CTYRAG | 1 cut(s) | 428 |
| Sse9I | AATT | 5 cut(s) | 54, 60, 227, 287, 332 |
| SspI | AATATT | 1 cut(s) | 76 |
| StyD4I | CCNGG | 3 cut(s) | 64, 339, 454 |
| TaaI | ACNGT | 2 cut(s) | 149, 416 |
| TasI | AATT | 5 cut(s) | 54, 60, 227, 287, 332 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TfiI | GAWTC | 2 cut(s) | 27, 620 |
| Tru1I | TTAA | 3 cut(s) | 240, 345, 441 |
| Tru9I | TTAA | 3 cut(s) | 240, 345, 441 |
| TseI | GCWGC | 1 cut(s) | 597 |
| TspDTI | ATGAA | 3 cut(s) | 4, 222, 240 |
| TspGWI | ACGGA | 1 cut(s) | 473 |
| XapI | RAATTY | 2 cut(s) | 227, 332 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 11 |