resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 267 - 447 | 2.5e-52 | TIR domain |
| TIR_2 | PF13676 | 270 - 367 | 6e-18 | TIR domain |
| NB-ARC | PF00931 | 471 - 629 | 2.1e-16 | NB-ARC domain |
| NACHT | PF05729 | 476 - 576 | 4.8e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 695 - 766 | 2.9e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 844 - 943 | 4.1e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 863 - 948 | 1.9e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 146, 422 |
| AccB1I | GGYRCC | 2 cut(s) | 566, 1110 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2001, 3284 |
| AccI | GTMKAC | 1 cut(s) | 3289 |
| AccII | CGCG | 4 cut(s) | 647, 793, 838, 1737 |
| AccIII | TCCGGA | 1 cut(s) | 2851 |
| AclWI | GGATC | 3 cut(s) | 111, 2151, 2995 |
| AcoI | YGGCCR | 3 cut(s) | 271, 720, 1725 |
| AcsI | RAATTY | 7 cut(s) | 1202, 1264, 1607, 1837, 2371, 3134, 3346 |
| AcuI | CTGAAG | 3 cut(s) | 2045, 3183, 3461 |
| AdeI | CACNNNGTG | 1 cut(s) | 1805 |
| AfaI | GTAC | 6 cut(s) | 584, 593, 761, 803, 1422, 3316 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 313, 587, 659, 2001, 2042, 2189, 3065, 3284 |
| AflIII | ACRYGT | 1 cut(s) | 2197 |
| AjnI | CCWGG | 3 cut(s) | 1750, 2308, 2569 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3221, 3253 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1571, 1603, 2184, 2216 |
| Alw21I | GWGCWC | 1 cut(s) | 1134 |
| Alw26I | GTCTC | 9 cut(s) | 37, 132, 222, 430, 549, 945, 2301, 2337, 2417 |
| AlwI | GGATC | 3 cut(s) | 111, 2151, 2995 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1945 |
| Ama87I | CYCGRG | 3 cut(s) | 1152, 1473, 2639 |
| Aor13HI | TCCGGA | 1 cut(s) | 2851 |
| AoxI | GGCC | 6 cut(s) | 271, 720, 827, 1725, 2731, 3005 |
| ApeKI | GCWGC | 4 cut(s) | 188, 1220, 1640, 1945 |
| ApoI | RAATTY | 7 cut(s) | 1202, 1264, 1607, 1837, 2371, 3134, 3346 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1337, 1369 |
| AseI | ATTAAT | 1 cut(s) | 2603 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2283, 3446 |
| AspLEI | GCGC | 4 cut(s) | 78, 649, 840, 2664 |
| AspS9I | GGNCC | 5 cut(s) | 316, 827, 1748, 1909, 3005 |
| AsuC2I | CCSGG | 4 cut(s) | 113, 589, 724, 1831 |
| AsuHPI | GGTGA | 4 cut(s) | 981, 1856, 3125, 3169 |
| AsuII | TTCGAA | 1 cut(s) | 129 |
| AvaI | CYCGRG | 3 cut(s) | 1152, 1473, 2639 |
| AvaII | GGWCC | 3 cut(s) | 316, 1748, 1909 |
| BanI | GGYRCC | 2 cut(s) | 566, 1110 |
| BanII | GRGCYC | 2 cut(s) | 1134, 1995 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 772, 804 |
| BauI | CACGAG | 1 cut(s) | 2298 |
| BbsI | GAAGAC | 5 cut(s) | 214, 269, 2346, 2768, 3449 |
| Bbv12I | GWGCWC | 1 cut(s) | 1134 |
| BbvI | GCAGC | 4 cut(s) | 200, 1207, 1627, 1932 |
| BceAI | ACGGC | 6 cut(s) | 250, 258, 484, 547, 619, 1933 |
| BciT130I | CCWGG | 3 cut(s) | 1752, 2310, 2571 |
| BciVI | GTATCC | 1 cut(s) | 1428 |
| BcnI | CCSGG | 4 cut(s) | 113, 589, 724, 1831 |
| BcoDI | GTCTC | 9 cut(s) | 37, 132, 222, 430, 549, 945, 2301, 2337, 2417 |
| BfaI | CTAG | 5 cut(s) | 65, 872, 2081, 2162, 3293 |
| BfoI | RGCGCY | 2 cut(s) | 79, 2665 |
| BfuI | GTATCC | 1 cut(s) | 1428 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2730 |
| BglII | AGATCT | 2 cut(s) | 741, 2431 |
| Bme1390I | CCNGG | 7 cut(s) | 113, 589, 724, 1752, 1831, 2310, 2571 |
| Bme18I | GGWCC | 3 cut(s) | 316, 1748, 1909 |
| BmeT110I | CYCGRG | 3 cut(s) | 1152, 1473, 2639 |
| BmgT120I | GGNCC | 5 cut(s) | 316, 827, 1748, 1909, 3005 |
| BmiI | GGNNCC | 5 cut(s) | 385, 568, 681, 1095, 1112 |
| BmrFI | CCNGG | 7 cut(s) | 113, 589, 724, 1752, 1831, 2310, 2571 |
| BmsI | GCATC | 7 cut(s) | 1434, 1505, 1837, 2819, 3009, 3328, 3350 |
| BoxI | GACNNNNGTC | 2 cut(s) | 214, 1494 |
| BpiI | GAAGAC | 5 cut(s) | 214, 269, 2346, 2768, 3449 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 31, 63 |
| BpmI | CTGGAG | 3 cut(s) | 100, 1656, 2412 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1938 |
| Bpu14I | TTCGAA | 1 cut(s) | 129 |
| BpuEI | CTTGAG | 6 cut(s) | 766, 1882, 1979, 2474, 2579, 3245 |
| BpuMI | CCSGG | 4 cut(s) | 113, 589, 724, 1831 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1851, 2142 |
| BsaI | GGTCTC | 2 cut(s) | 37, 2337 |
| BsaJI | CCNNGG | 8 cut(s) | 268, 466, 723, 755, 1010, 1751, 1776, 2506 |
| BsaWI | WCCGGW | 3 cut(s) | 211, 313, 2851 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 350, 380, 404, 434, 2651, 2681 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 313, 587, 659, 2001, 2042, 2189, 3065, 3284 |
| Bse118I | RCCGGY | 1 cut(s) | 676 |
| Bse1I | ACTGG | 2 cut(s) | 1639, 1745 |
| Bse3DI | GCAATG | 1 cut(s) | 2242 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1851, 2142 |
| BseAI | TCCGGA | 1 cut(s) | 2851 |
| BseBI | CCWGG | 3 cut(s) | 1752, 2310, 2571 |
| BseDI | CCNNGG | 8 cut(s) | 268, 466, 723, 755, 1010, 1751, 1776, 2506 |
| BseJI | GATNNNNATC | 2 cut(s) | 1851, 2142 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 313, 587, 659, 2001, 2042, 2189, 3065, 3284 |
| BseMI | GCAATG | 1 cut(s) | 2242 |
| BseMII | CTCAG | 6 cut(s) | 417, 1266, 1952, 2717, 2741, 3086 |
| BseNI | ACTGG | 2 cut(s) | 1639, 1745 |
| BseRI | GAGGAG | 4 cut(s) | 340, 439, 974, 1464 |
| BseX3I | CGGCCG | 2 cut(s) | 271, 720 |
| BseXI | GCAGC | 4 cut(s) | 200, 1207, 1627, 1932 |
| BseYI | CCCAGC | 2 cut(s) | 27, 2274 |
| BsgI | GTGCAG | 2 cut(s) | 443, 2743 |
| Bsh1236I | CGCG | 4 cut(s) | 647, 793, 838, 1737 |
| Bsh1285I | CGRYCG | 2 cut(s) | 274, 723 |
| BshFI | GGCC | 6 cut(s) | 273, 722, 829, 1727, 2733, 3007 |
| BshNI | GGYRCC | 2 cut(s) | 566, 1110 |
| BsiEI | CGRYCG | 2 cut(s) | 274, 723 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1134 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1152, 1473, 2639 |
| BslFI | GGGAC | 2 cut(s) | 740, 3267 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 313, 587, 659, 2001, 2042, 2189, 3065, 3284 |
| BsmAI | GTCTC | 9 cut(s) | 37, 132, 222, 430, 549, 945, 2301, 2337, 2417 |
| BsmBI | CGTCTC | 4 cut(s) | 132, 430, 549, 945 |
| BsmFI | GGGAC | 2 cut(s) | 740, 3267 |
| BsmI | GAATGC | 1 cut(s) | 750 |
| BsnI | GGCC | 6 cut(s) | 273, 722, 829, 1727, 2733, 3007 |
| Bso31I | GGTCTC | 2 cut(s) | 37, 2337 |
| BsoBI | CYCGRG | 3 cut(s) | 1152, 1473, 2639 |
| Bsp119I | TTCGAA | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1134, 1995 |
| Bsp13I | TCCGGA | 1 cut(s) | 2851 |
| Bsp19I | CCATGG | 1 cut(s) | 1010 |
| Bsp68I | TCGCGA | 1 cut(s) | 1737 |
| BspANI | GGCC | 6 cut(s) | 273, 722, 829, 1727, 2733, 3007 |
| BspCNI | CTCAG | 6 cut(s) | 416, 1267, 1951, 2718, 2742, 3087 |
| BspEI | TCCGGA | 1 cut(s) | 2851 |
| BspFNI | CGCG | 4 cut(s) | 647, 793, 838, 1737 |
| BspHI | TCATGA | 1 cut(s) | 2335 |
| BspLI | GGNNCC | 5 cut(s) | 385, 568, 681, 1095, 1112 |
| BspPI | GGATC | 3 cut(s) | 111, 2151, 2995 |
| BspT104I | TTCGAA | 1 cut(s) | 129 |
| BspT107I | GGYRCC | 2 cut(s) | 566, 1110 |
| BspTNI | GGTCTC | 2 cut(s) | 37, 2337 |
| BsrDI | GCAATG | 1 cut(s) | 2242 |
| BsrFI | RCCGGY | 1 cut(s) | 676 |
| BsrI | ACTGG | 2 cut(s) | 1639, 1745 |
| BssAI | RCCGGY | 1 cut(s) | 676 |
| BssECI | CCNNGG | 8 cut(s) | 268, 466, 723, 755, 1010, 1751, 1776, 2506 |
| BssSI | CACGAG | 1 cut(s) | 2298 |
| BssT1I | CCWWGG | 2 cut(s) | 1010, 2506 |
| Bst2BI | CACGAG | 1 cut(s) | 2298 |
| Bst2UI | CCWGG | 3 cut(s) | 1752, 2310, 2571 |
| Bst4CI | ACNGT | 4 cut(s) | 196, 1922, 2244, 2876 |
| Bst6I | CTCTTC | 2 cut(s) | 1529, 3255 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2257 |
| BstBI | TTCGAA | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 4 cut(s) | 678, 1470, 2440, 3056 |
| BstDSI | CCRYGG | 3 cut(s) | 466, 1010, 1776 |
| BstEII | GGTNACC | 1 cut(s) | 3157 |
| BstFNI | CGCG | 4 cut(s) | 647, 793, 838, 1737 |
| BstH2I | RGCGCY | 2 cut(s) | 79, 2665 |
| BstHHI | GCGC | 4 cut(s) | 78, 649, 840, 2664 |
| BstMAI | GTCTC | 9 cut(s) | 37, 132, 222, 430, 549, 945, 2301, 2337, 2417 |
| BstMCI | CGRYCG | 2 cut(s) | 274, 723 |
| BstNI | CCWGG | 3 cut(s) | 1752, 2310, 2571 |
| BstNSI | RCATGY | 1 cut(s) | 2201 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 214, 1494 |
| BstPI | GGTNACC | 1 cut(s) | 3157 |
| BstSCI | CCNGG | 7 cut(s) | 111, 587, 722, 1750, 1829, 2308, 2569 |
| BstUI | CGCG | 4 cut(s) | 647, 793, 838, 1737 |
| BstV1I | GCAGC | 4 cut(s) | 200, 1207, 1627, 1932 |
| BstV2I | GAAGAC | 5 cut(s) | 214, 269, 2346, 2768, 3449 |
| BstX2I | RGATCY | 3 cut(s) | 741, 2431, 2987 |
| BstYI | RGATCY | 3 cut(s) | 741, 2431, 2987 |
| BstZI | CGGCCG | 2 cut(s) | 271, 720 |
| BsuI | GTATCC | 1 cut(s) | 1428 |
| BsuRI | GGCC | 6 cut(s) | 273, 722, 829, 1727, 2733, 3007 |
| BtgI | CCRYGG | 3 cut(s) | 466, 1010, 1776 |
| BtgZI | GCGATG | 1 cut(s) | 808 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 3320 |
| BtuMI | TCGCGA | 1 cut(s) | 1737 |
| Cac8I | GCNNGC | 4 cut(s) | 678, 1470, 2440, 3056 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1945 |
| CciI | TCATGA | 1 cut(s) | 2335 |
| CfoI | GCGC | 4 cut(s) | 78, 649, 840, 2664 |
| Cfr10I | RCCGGY | 1 cut(s) | 676 |
| Cfr13I | GGNCC | 5 cut(s) | 316, 827, 1748, 1909, 3005 |
| CpoI | CGGWCCG | 1 cut(s) | 316 |
| CseI | GACGC | 1 cut(s) | 3379 |
| Csp6I | GTAC | 6 cut(s) | 583, 592, 760, 802, 1421, 3315 |
| CspI | CGGWCCG | 1 cut(s) | 316 |
| CviQI | GTAC | 6 cut(s) | 583, 592, 760, 802, 1421, 3315 |
| DraI | TTTAAA | 4 cut(s) | 1546, 1869, 2377, 2994 |
| DraIII | CACNNNGTG | 1 cut(s) | 1805 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 146, 422 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 146, 422 |
| EaeI | YGGCCR | 3 cut(s) | 271, 720, 1725 |
| EagI | CGGCCG | 2 cut(s) | 271, 720 |
| Eam1104I | CTCTTC | 2 cut(s) | 1529, 3255 |
| EarI | CTCTTC | 2 cut(s) | 1529, 3255 |
| EciI | GGCGGA | 2 cut(s) | 236, 567 |
| Ecl136II | GAGCTC | 1 cut(s) | 1132 |
| EclXI | CGGCCG | 2 cut(s) | 271, 720 |
| Eco130I | CCWWGG | 2 cut(s) | 1010, 2506 |
| Eco24I | GRGCYC | 2 cut(s) | 1134, 1995 |
| Eco31I | GGTCTC | 2 cut(s) | 37, 2337 |
| Eco47I | GGWCC | 3 cut(s) | 316, 1748, 1909 |
| Eco52I | CGGCCG | 2 cut(s) | 271, 720 |
| Eco53kI | GAGCTC | 1 cut(s) | 1132 |
| Eco57I | CTGAAG | 3 cut(s) | 2045, 3183, 3461 |
| Eco88I | CYCGRG | 3 cut(s) | 1152, 1473, 2639 |
| Eco91I | GGTNACC | 1 cut(s) | 3157 |
| EcoICRI | GAGCTC | 1 cut(s) | 1132 |
| EcoO65I | GGTNACC | 1 cut(s) | 3157 |
| EcoRII | CCWGG | 3 cut(s) | 1750, 2308, 2569 |
| EcoT14I | CCWWGG | 2 cut(s) | 1010, 2506 |
| EcoT22I | ATGCAT | 4 cut(s) | 1049, 2253, 2834, 3343 |
| EcoT38I | GRGCYC | 2 cut(s) | 1134, 1995 |
| ErhI | CCWWGG | 2 cut(s) | 1010, 2506 |
| Esp3I | CGTCTC | 4 cut(s) | 132, 430, 549, 945 |
| FaqI | GGGAC | 2 cut(s) | 740, 3267 |
| FauI | CCCGC | 1 cut(s) | 652 |
| FblI | GTMKAC | 1 cut(s) | 3289 |
| FriOI | GRGCYC | 2 cut(s) | 1134, 1995 |
| FspBI | CTAG | 5 cut(s) | 65, 872, 2081, 2162, 3293 |
| GlaI | GCGC | 4 cut(s) | 77, 648, 839, 2663 |
| GsaI | CCCAGC | 2 cut(s) | 31, 2278 |
| GsuI | CTGGAG | 3 cut(s) | 100, 1656, 2412 |
| HaeII | RGCGCY | 2 cut(s) | 79, 2665 |
| HaeIII | GGCC | 6 cut(s) | 273, 722, 829, 1727, 2733, 3007 |
| HgaI | GACGC | 1 cut(s) | 3379 |
| HhaI | GCGC | 4 cut(s) | 78, 649, 840, 2664 |
| Hin6I | GCGC | 4 cut(s) | 76, 647, 838, 2662 |
| HinP1I | GCGC | 4 cut(s) | 76, 647, 838, 2662 |
| HincII | GTYRAC | 1 cut(s) | 1345 |
| HindII | GTYRAC | 1 cut(s) | 1345 |
| HindIII | AAGCTT | 2 cut(s) | 2522, 3221 |
| HphI | GGTGA | 4 cut(s) | 981, 1856, 3125, 3169 |
| Hpy166II | GTNNAC | 3 cut(s) | 1345, 2872, 3290 |
| Hpy8I | GTNNAC | 3 cut(s) | 1345, 2872, 3290 |
| Hpy99I | CGWCG | 7 cut(s) | 40, 111, 152, 187, 416, 419, 3134 |
| HpyCH4III | ACNGT | 4 cut(s) | 196, 1922, 2244, 2876 |
| HpyCH4IV | ACGT | 1 cut(s) | 2317 |
| HpySE526I | ACGT | 1 cut(s) | 2317 |
| HspAI | GCGC | 4 cut(s) | 76, 647, 838, 2662 |
| Kpn2I | TCCGGA | 1 cut(s) | 2851 |
| KroI | GCCGGC | 1 cut(s) | 676 |
| KroNI | GCCGGC | 1 cut(s) | 678 |
| LmnI | GCTCC | 9 cut(s) | 389, 435, 685, 1093, 1637, 1755, 1892, 2659, 3119 |
| Lsp1109I | GCAGC | 4 cut(s) | 200, 1207, 1627, 1932 |
| LweI | GCATC | 7 cut(s) | 1434, 1505, 1837, 2819, 3009, 3328, 3350 |
| MaeI | CTAG | 5 cut(s) | 65, 872, 2081, 2162, 3293 |
| MaeII | ACGT | 1 cut(s) | 2317 |
| MaeIII | GTNAC | 8 cut(s) | 713, 1030, 1916, 2149, 2171, 2753, 3140, 3157 |
| MfeI | CAATTG | 4 cut(s) | 954, 1296, 2013, 2715 |
| MflI | RGATCY | 3 cut(s) | 741, 2431, 2987 |
| MhlI | GDGCHC | 2 cut(s) | 1134, 1995 |
| MlyI | GAGTC | 8 cut(s) | 40, 224, 413, 710, 971, 1077, 2303, 2419 |
| MmeI | TCCRAC | 6 cut(s) | 97, 435, 465, 522, 1392, 2337 |
| Mph1103I | ATGCAT | 4 cut(s) | 1049, 2253, 2834, 3343 |
| MroI | TCCGGA | 1 cut(s) | 2851 |
| MroNI | GCCGGC | 1 cut(s) | 676 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2283, 3446 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1076, 1598 |
| MspR9I | CCNGG | 7 cut(s) | 113, 589, 724, 1752, 1831, 2310, 2571 |
| MunI | CAATTG | 4 cut(s) | 954, 1296, 2013, 2715 |
| Mva1269I | GAATGC | 1 cut(s) | 750 |
| MvaI | CCWGG | 3 cut(s) | 1752, 2310, 2571 |
| MvnI | CGCG | 4 cut(s) | 647, 793, 838, 1737 |
| NaeI | GCCGGC | 1 cut(s) | 678 |
| NciI | CCSGG | 4 cut(s) | 113, 589, 724, 1831 |
| NcoI | CCATGG | 1 cut(s) | 1010 |
| NgoMIV | GCCGGC | 1 cut(s) | 676 |
| NlaIV | GGNNCC | 5 cut(s) | 385, 568, 681, 1095, 1112 |
| NmeAIII | GCCGAG | 4 cut(s) | 249, 698, 735, 801 |
| NmuCI | GTSAC | 6 cut(s) | 713, 1030, 1916, 2149, 2171, 3157 |
| NruI | TCGCGA | 1 cut(s) | 1737 |
| NsiI | ATGCAT | 4 cut(s) | 1049, 2253, 2834, 3343 |
| NspI | RCATGY | 1 cut(s) | 2201 |
| NspV | TTCGAA | 1 cut(s) | 129 |
| PaeR7I | CTCGAG | 1 cut(s) | 1473 |
| PagI | TCATGA | 1 cut(s) | 2335 |
| PciI | ACATGT | 1 cut(s) | 2197 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 420 |
| PctI | GAATGC | 1 cut(s) | 750 |
| PdiI | GCCGGC | 1 cut(s) | 678 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2283, 3446 |
| PflFI | GACNNNGTC | 2 cut(s) | 143, 422 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2001, 3284 |
| PleI | GAGTC | 8 cut(s) | 40, 223, 413, 710, 970, 1076, 2302, 2419 |
| PpsI | GAGTC | 8 cut(s) | 40, 223, 413, 710, 970, 1076, 2302, 2419 |
| PscI | ACATGT | 1 cut(s) | 2197 |
| PshAI | GACNNNNGTC | 2 cut(s) | 214, 1494 |
| PshBI | ATTAAT | 1 cut(s) | 2603 |
| Psp124BI | GAGCTC | 1 cut(s) | 1134 |
| Psp6I | CCWGG | 3 cut(s) | 1750, 2308, 2569 |
| PspEI | GGTNACC | 1 cut(s) | 3157 |
| PspFI | CCCAGC | 2 cut(s) | 27, 2274 |
| PspGI | CCWGG | 3 cut(s) | 1750, 2308, 2569 |
| PspN4I | GGNNCC | 5 cut(s) | 385, 568, 681, 1095, 1112 |
| PspPI | GGNCC | 5 cut(s) | 316, 827, 1748, 1909, 3005 |
| PspXI | VCTCGAGB | 1 cut(s) | 1473 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1945 |
| PsuI | RGATCY | 3 cut(s) | 741, 2431, 2987 |
| PsyI | GACNNNGTC | 2 cut(s) | 143, 422 |
| RruI | TCGCGA | 1 cut(s) | 1737 |
| RsaI | GTAC | 6 cut(s) | 584, 593, 761, 803, 1422, 3316 |
| RsaNI | GTAC | 6 cut(s) | 583, 592, 760, 802, 1421, 3315 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1076, 1598 |
| Rsr2I | CGGWCCG | 1 cut(s) | 316 |
| RsrII | CGGWCCG | 1 cut(s) | 316 |
| SacI | GAGCTC | 1 cut(s) | 1134 |
| Sau96I | GGNCC | 5 cut(s) | 316, 827, 1748, 1909, 3005 |
| SchI | GAGTC | 8 cut(s) | 40, 224, 413, 710, 971, 1077, 2303, 2419 |
| ScrFI | CCNGG | 7 cut(s) | 113, 589, 724, 1752, 1831, 2310, 2571 |
| SduI | GDGCHC | 2 cut(s) | 1134, 1995 |
| SfaNI | GCATC | 7 cut(s) | 1434, 1505, 1837, 2819, 3009, 3328, 3350 |
| Sfr274I | CTCGAG | 1 cut(s) | 1473 |
| SfuI | TTCGAA | 1 cut(s) | 129 |
| SinI | GGWCC | 3 cut(s) | 316, 1748, 1909 |
| SlaI | CTCGAG | 1 cut(s) | 1473 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1076, 1598 |
| SmlI | CTYRAG | 7 cut(s) | 745, 1473, 1861, 1958, 2453, 2558, 3224 |
| SmoI | CTYRAG | 7 cut(s) | 745, 1473, 1861, 1958, 2453, 2558, 3224 |
| SspI | AATATT | 2 cut(s) | 247, 2103 |
| SspMI | CTAG | 5 cut(s) | 65, 872, 2081, 2162, 3293 |
| SstI | GAGCTC | 1 cut(s) | 1134 |
| StyD4I | CCNGG | 7 cut(s) | 111, 587, 722, 1750, 1829, 2308, 2569 |
| StyI | CCWWGG | 2 cut(s) | 1010, 2506 |
| TaaI | ACNGT | 4 cut(s) | 196, 1922, 2244, 2876 |
| TaiI | ACGT | 1 cut(s) | 2320 |
| TaqI | TCGA | 4 cut(s) | 38, 129, 1066, 1474 |
| TatI | WGTACW | 1 cut(s) | 3314 |
| TscAI | CASTG | 2 cut(s) | 201, 3327 |
| TseFI | GTSAC | 6 cut(s) | 713, 1030, 1916, 2149, 2171, 3157 |
| TseI | GCWGC | 4 cut(s) | 188, 1220, 1640, 1945 |
| Tsp45I | GTSAC | 6 cut(s) | 713, 1030, 1916, 2149, 2171, 3157 |
| TspGWI | ACGGA | 9 cut(s) | 171, 241, 412, 570, 573, 675, 892, 1361, 1793 |
| TspRI | CASTG | 2 cut(s) | 201, 3327 |
| Tth111I | GACNNNGTC | 2 cut(s) | 143, 422 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2001, 3284 |
| VpaK11BI | GGWCC | 3 cut(s) | 316, 1748, 1909 |
| VspI | ATTAAT | 1 cut(s) | 2603 |
| XapI | RAATTY | 7 cut(s) | 1202, 1264, 1607, 1837, 2371, 3134, 3346 |
| XbaI | TCTAGA | 1 cut(s) | 2080 |
| XceI | RCATGY | 1 cut(s) | 2201 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1597, 2504 |
| XhoI | CTCGAG | 1 cut(s) | 1473 |
| XmiI | GTMKAC | 1 cut(s) | 3289 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2283, 3446 |
| XspI | CTAG | 5 cut(s) | 65, 872, 2081, 2162, 3293 |
| Zsp2I | ATGCAT | 4 cut(s) | 1049, 2253, 2834, 3343 |