Rw3G022830

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000105
Physical Location & Seq
Reverse (-)
28250029 .. 28250700
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022830.1

Sequence Viewer

Length: 588 bp
ATGCTGAAGACATTCATGTATCAGGGAATCTCTAATAAGGGGGAAACTTTTCAAATTGTAATTCCTGGAAGTACTATTCATGAGTGGTTCAGCCATCAGAGTGTTGGGTGTTCATTGAGTGTATCTCTACCTGTATATTGGGATAACAGTCGGTTTTTGGGATTTGCTTTTTGTGCTGTTTTTGTACTCCATGAGCACCATCCGGTGGAGGAGCTTTATATAGATGAATTCAAGACTTTTAATGCAACACATCATCTTGTATGTTGCCTGAAGCTCGATGGAAGAGAATTGGAAGTAGATGGCAGACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTGAATCAGATCACCTGTGGCTATTCTATGTATTCAAAGATAAATACTTTGGTACAGAGTGGTGGCATAACAGTTGCAGTCAGCTTGAGTTCTTATTTGAAACCAGAGGGCCGGGTCTGGAGGTGAAGGAGTGTGGAGTCCGTCTGATATATGAGGAAGATGTGCAAGAGTTGAACCAAACAACCACTCAATCAAGCAGTCGGATGTCTCCTTATGAGGATATATTGATTGGTAACATACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

195

Amino Acids

22.79

Weight (kDa)

4.95

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 21 - 170 2.5e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AcsI RAATTY 2 cut(s) 227, 332
AcuI CTGAAG 2 cut(s) 26, 290
AfaI GTAC 3 cut(s) 73, 186, 397
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 6 cut(s) 53, 232, 347, 379, 443, 517
AjnI CCWGG 2 cut(s) 64, 339
AluBI AGCT 3 cut(s) 214, 274, 427
AluI AGCT 3 cut(s) 214, 274, 427
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 555
AoxI GGCC 1 cut(s) 452
ApoI RAATTY 2 cut(s) 227, 332
Asp700I GAANNNNTTC 2 cut(s) 11, 48
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 347, 478
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 198
BccI CCATC 4 cut(s) 102, 207, 272, 293
BciT130I CCWGG 2 cut(s) 66, 341
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 555
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 3 cut(s) 66, 341, 456
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 3 cut(s) 66, 341, 456
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseBI CCWGG 2 cut(s) 66, 341
BseGI GGATG 2 cut(s) 199, 552
BseLI CCNNNNNNNGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 203, 455
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 555
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 352
BspANI GGCC 1 cut(s) 454
BspHI TCATGA 1 cut(s) 79
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 2 cut(s) 66, 341
Bst4CI ACNGT 2 cut(s) 149, 416
Bst6I CTCTTC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 312
BstF5I GGATG 2 cut(s) 199, 552
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 2 cut(s) 66, 341
BstSCI CCNGG 3 cut(s) 64, 339, 454
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 1 cut(s) 454
BtsCI GGATG 2 cut(s) 199, 552
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 72, 185, 396
CviAII CATG 3 cut(s) 16, 80, 191
CviJI RGCY 7 cut(s) 93, 214, 274, 310, 364, 427, 454
CviKI_1 RGCY 7 cut(s) 93, 214, 274, 310, 364, 427, 454
CviQI GTAC 3 cut(s) 72, 185, 396
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 26, 290
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 64, 339
FaeI CATG 3 cut(s) 19, 83, 194
FatI CATG 3 cut(s) 15, 79, 190
FokI GGATG 2 cut(s) 186, 559
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 1 cut(s) 454
HapII CCGG 2 cut(s) 203, 455
Hin1II CATG 3 cut(s) 19, 83, 194
HinfI GANTC 3 cut(s) 27, 347, 480
HpaII CCGG 2 cut(s) 203, 455
HphI GGTGA 2 cut(s) 347, 478
Hpy188I TCNGA 4 cut(s) 99, 352, 489, 546
Hpy188III TCNNGA 3 cut(s) 80, 232, 461
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 2 cut(s) 149, 416
HpyCH4V TGCA 4 cut(s) 245, 314, 420, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
Hsp92II CATG 3 cut(s) 19, 83, 194
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 4 cut(s) 19, 294, 341, 512
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 54, 60, 227, 287, 332
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 1 cut(s) 524
MnlI CCTC 5 cut(s) 202, 443, 457, 490, 553
MroXI GAANNNNTTC 2 cut(s) 11, 48
MseI TTAA 2 cut(s) 240, 586
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 2 cut(s) 203, 455
MspR9I CCNGG 3 cut(s) 66, 341, 456
MvaI CCWGG 2 cut(s) 66, 341
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 456
NdeII GATC 1 cut(s) 352
NlaIII CATG 3 cut(s) 19, 83, 194
PagI TCATGA 1 cut(s) 79
PdmI GAANNNNTTC 2 cut(s) 11, 48
PfeI GAWTC 2 cut(s) 27, 347
PflMI CCANNNNNTGG 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 64
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 64, 339
PspGI CCWGG 2 cut(s) 64, 339
PspPI GGNCC 1 cut(s) 452
RsaI GTAC 3 cut(s) 73, 186, 397
RsaNI GTAC 3 cut(s) 72, 185, 396
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 240, 586
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 3 cut(s) 66, 341, 456
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 133, 216, 276, 345, 360, 429, 468
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 5 cut(s) 54, 60, 227, 287, 332
StyD4I CCNGG 3 cut(s) 64, 339, 454
TaaI ACNGT 2 cut(s) 149, 416
TaqI TCGA 1 cut(s) 276
TasI AATT 5 cut(s) 54, 60, 227, 287, 332
TatI WGTACW 2 cut(s) 71, 184
TfiI GAWTC 2 cut(s) 27, 347
Tru1I TTAA 2 cut(s) 240, 586
Tru9I TTAA 2 cut(s) 240, 586
TspDTI ATGAA 4 cut(s) 4, 68, 102, 240
TspGWI ACGGA 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 205
XapI RAATTY 2 cut(s) 227, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmnI GAANNNNTTC 2 cut(s) 11, 48
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.