RchiOBHm_Chr6g0247331

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000105
Physical Location & Seq
Forward (+)
3180868 .. 3185585
4718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22171

Sequence Viewer

Length: 1755 bp
ATGCATGATTTGCTACAAGAAATGGGCTGGGAAATAGTTCGTCGACAGTCTCCTAAAGAGTCAGGCAAACGTAGTAGATTGTGGTCTCATGAAGACATCCACCATGTGTTGAAGAAAAATAAGGGAACAGAAGCAATCCAAGGGATGGTAATGGAGTTGCCTAAATTAGAAGTGGCTCATTGGAATCCAGAAGCCTTCTCAAATTTGTCTGAACTTAATCTTCTCCATATTCGTAATGTGGACCTTCCCAAAGGCCTCACTTGTCTTTCTAATTCCTTGAGACTCCTGGAATGGCCTGGGTGTCCGTTAAGATCTCTCCCACAAAAGTTCGAATCAGATGAACTTATTGAACTTAACTTGTGTCACAGCAATATTGAACATCTTTGGGAGGGAGAAAAGAATTTTGACAAGTTGAAGTTCATCAAACTCTGCCATTCTCAAAACATTGTGGAGACCCCAGACCTCGCGGGCATTCAGAATCTTGAGAGTTTAGATCTTGAAGGATGTAAGAGTTTGGTAAGAATCCATCAATCCCTCGGATTTCTCAAAAAGCTTATTGTCCTGAATCTTAAAGACTACAAAAGTCTTGAGAATCTGCCAGGTAGAATTGAAATGGAATCTCTTCAAACATTAATTCTGTCTAACTGCTCAAAAATTAAAAAGATTCCCGAGTTTGATGGAAATATGGAGCGTCTGTCTGTGCTTGATCTCGATGAGACTGCCATTGAGGAACTGCCTGTTTCAATTGGACGCCTGAGTGGCCTTGTGTCATTGAATCTAAGTAACTGCACAAATCTTGTCCGTCTTCCAAGCACCATCAATAATTTGAAGTTTGTTAAAAATCTTAATCTTTCTGGATGCATGAAACTTGGCAAACATCAGGAAAGCGAGAGGGAGAGGGAATGTTATGAGGAAAATGATGTGAATAGTGGGTCTGCAATAGAAATGTCATCTACCTATGATCTCATAAAGCATGTGAGAGGTTCATTCTTTCATGGATGCGAAGTGAATACAGAGCCAATGAGTTTCCGCTTGCCTATATGGGGTCTCTGTAATTTAACATATCTGAACCTGCGTAATTGCAATCTTGGCGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTATGGTGACCTTGAATCTAAGTGGAAATAATTTTGTTCGTCTTCGTTCAGGCATTGGATCGCTTTCTAAGCTTGAGAACTTGAACTTGGAAAATTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTAGCCTAGATTTAAGGGCAGATGGTTGTACTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACAGATTGAACAAATCATATTTCAATTTCATCAATTGCGTCAATCTAAATGGCAATCAGGGATGCAATAACATAGCATTTGAAATGCTGAAGACATTCATGTATCAGGGAATCTCTGATAAGAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTCCTGAGTGGTTCAGCCATCGAAGTGGTGGGCGTTCATTAAGTGTGAAGCTGCCTCCAGATTGGGATAGCAGTAGGTTTATGGGATTTGCTGTGTGTGTTGTTTTTGTACTCCATGAGCACCATCAGGTTGATGAGCTTGATATTCATCAATTCAAGAATTTTAACACTACTCACCATCTTGTATGTTGCCTGGAGCTCAATGGAAGAGAATTAGATGTATATGGCAGACAGCCTGCATTTCGCTTTAGTGAAGAGTTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR UreF

Protein Analysis

584

Amino Acids

66.61

Weight (kDa)

6.02

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 206 - 291 5.5e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 217 - 286 5.2e-09 Leucine-rich repeat region
C-JID PF20160 492 - 554 2.1e-16 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000105)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00561 FvH4_2g00570
malus_domestica MD10G1006400.v1.1 MD10G1006800.v1.1 MD10G1007300.v1.1 MD12G1125200.v1.1 MD12G1125400.v1.1
prunus_persica Prupe.2G059200_v2.0.a1 Prupe.8G005200_v2.0.a1 Prupe.8G046600_v2.0.a1
pyrus_communis pycom10g00460 pycom12g12340 pycom12g12360 pycom14g00580
rosa_chinensis RchiOBHm_Chr1g0315021 RchiOBHm_Chr1g0319431 RchiOBHm_Chr1g0319441 RchiOBHm_Chr1g0321301 RchiOBHm_Chr1g0322041 RchiOBHm_Chr1g0322381 RchiOBHm_Chr1g0322421 RchiOBHm_Chr1g0322491 RchiOBHm_Chr1g0322521 RchiOBHm_Chr1g0322531 RchiOBHm_Chr1g0322651 RchiOBHm_Chr1g0322701 RchiOBHm_Chr1g0322711 RchiOBHm_Chr1g0322741 RchiOBHm_Chr1g0322781 RchiOBHm_Chr1g0322831 RchiOBHm_Chr1g0322941 RchiOBHm_Chr1g0322961 RchiOBHm_Chr1g0323161 RchiOBHm_Chr1g0323221 RchiOBHm_Chr1g0323401 RchiOBHm_Chr1g0323411 RchiOBHm_Chr1g0323501 RchiOBHm_Chr1g0323611 RchiOBHm_Chr1g0323761 RchiOBHm_Chr1g0328941 RchiOBHm_Chr1g0328951 RchiOBHm_Chr1g0329001 RchiOBHm_Chr2g0101061 RchiOBHm_Chr5g0055671 RchiOBHm_Chr6g0244821 RchiOBHm_Chr6g0244831 RchiOBHm_Chr6g0244851 RchiOBHm_Chr6g0247291 RchiOBHm_Chr6g0247321 RchiOBHm_Chr6g0247331 RchiOBHm_Chr6g0250501 RchiOBHm_Chr6g0250511 RchiOBHm_Chr6g0250551 RchiOBHm_Chr6g0250581 RchiOBHm_Chr6g0250621 RchiOBHm_Chr6g0250681 RchiOBHm_Chr6g0250801 RchiOBHm_Chr6g0250831 RchiOBHm_Chr6g0250871 RchiOBHm_Chr6g0250911 RchiOBHm_Chr6g0250931 RchiOBHm_Chr6g0251011
rosa_laevigata RLG00000002602 RLG00000013892 RLG00000015208 RLG00000015326 RLG00000015500 RLG00000015524 RLG00000015527 RLG00000015528 RLG00000015531 RLG00000015536 RLG00000016540 RLG00000017048 RLG00000023324 RLG00000024652 RLG00000030298 RLG00000030301 RLG00000030303 RLG00000030304 RLG00000030318 RLG00000030322 RLG00000030325 RLG00000030326 RLG00000030331 RLG00000030350 RLG00000030354 RLG00000030357 RLG00000030358 RLG00000030367 RLG00000030369 RLG00000030382 RLG00000030389 RLG00000035003
rosa_multiflora Rmu_sc0000252.1_g000011 Rmu_sc0000252.1_g000020 Rmu_sc0000252.1_g000029 Rmu_sc0000276.1_g000063 Rmu_sc0000504.1_g000023 Rmu_sc0000745.1_g000032 Rmu_sc0000745.1_g000041 Rmu_sc0000749.1_g000028 Rmu_sc0000749.1_g000035 Rmu_sc0000749.1_g000041 Rmu_sc0000749.1_g000052 Rmu_sc0000804.1_g000001 Rmu_sc0001168.1_g000012 Rmu_sc0001209.1_g000011 Rmu_sc0001209.1_g000022 Rmu_sc0001209.1_g000029 Rmu_sc0001209.1_g000031 Rmu_sc0001209.1_g000032 Rmu_sc0001932.1_g000010 Rmu_sc0001932.1_g000023 Rmu_sc0001932.1_g000028 Rmu_sc0002132.1_g000015 Rmu_sc0002132.1_g000031 Rmu_sc0002132.1_g000047 Rmu_sc0002263.1_g000015 Rmu_sc0002263.1_g000024 Rmu_sc0002263.1_g000028 Rmu_sc0002263.1_g000030 Rmu_sc0002263.1_g000039 Rmu_sc0002634.1_g000017 Rmu_sc0002634.1_g000024 Rmu_sc0002634.1_g000038 Rmu_sc0003226.1_g000025 Rmu_sc0003226.1_g000083 Rmu_sc0003226.1_g000084 Rmu_sc0003413.1_g000022 Rmu_sc0003413.1_g000023 Rmu_sc0003418.1_g000011 Rmu_sc0003418.1_g000012 Rmu_sc0003743.1_g000036 Rmu_sc0004185.1_g000005 Rmu_sc0004368.1_g000015 Rmu_sc0004368.1_g000031 Rmu_sc0004368.1_g000032 Rmu_sc0004439.1_g000008 Rmu_sc0006638.1_g000017 Rmu_sc0007485.1_g000009 Rmu_sc0007698.1_g000015 Rmu_sc0009428.1_g000002 Rmu_sc0012920.1_g000010 Rmu_sc0019291.1_g000002 Rmu_sc0026821.1_g000001
rosa_roxburghii Rroxscaffold_160G00433940 Rroxscaffold_180G00433550 Rroxscaffold_1G00024620 Rroxscaffold_2G00121250 Rroxscaffold_2G00141590 Rroxscaffold_2G00146640 Rroxscaffold_2G00146660 Rroxscaffold_4G00320080 Rroxscaffold_4G00321280 Rroxscaffold_4G00326440 Rroxscaffold_4G00326450 Rroxscaffold_4G00326500 Rroxscaffold_4G00326530 Rroxscaffold_4G00326610 Rroxscaffold_4G00326620 Rroxscaffold_4G00326770 Rroxscaffold_4G00326830 Rroxscaffold_4G00326870 Rroxscaffold_4G00326930 Rroxscaffold_4G00326940 Rroxscaffold_4G00326960 Rroxscaffold_4G00326980 Rroxscaffold_4G00327010 Rroxscaffold_4G00327110 Rroxscaffold_4G00327120 Rroxscaffold_4G00327140 Rroxscaffold_4G00327190 Rroxscaffold_4G00327200 Rroxscaffold_4G00327230 Rroxscaffold_4G00327260 Rroxscaffold_4G00327270 Rroxscaffold_4G00327320 Rroxscaffold_4G00327330 Rroxscaffold_7G00198650 Rroxscaffold_7G00214100 Rroxscaffold_7G00217130 Rroxscaffold_7G00217160 Rroxscaffold_7G00217180
rosa_rugosa Rorug01G0034500 Rorug01G0035700 Rorug01G0036000 Rorug01G0036100 Rorug01G0036200 Rorug01G0036700 Rorug01G0037900 Rorug01G0038000 Rorug01G0039000.1 Rorug01G0039400 Rorug02G0096400 Rorug02G0096500 Rorug02G0096600 Rorug02G0096700 Rorug02G0096800 Rorug05G0294500 Rorug05G0497900 Rorug05G0499300 Rorug05G0524600 Rorug06G0043700 Rorug06G0044200 RorugPtG0003400.1
rosa_samantha Rh1BG033300 Rh1BG046700 Rh1BG047600 Rh1BG109300 Rh2CG149400 Rh5CG398600 Rh5CG398700 Rh6DG004400 Rh6DG004700 Rh6DG004900 Rh6DG032100 Rh6DG032400
rosa_wichuraiana Rw0G001800 Rw0G020500 Rw0G020900 Rw1G003430 Rw1G003890 Rw1G004390 Rw1G004400 Rw1G004440 Rw1G004470 Rw1G004490 Rw1G004500 Rw1G004510 Rw1G004570 Rw1G004610 Rw1G004660 Rw1G004680 Rw1G004700 Rw1G004780 Rw1G004800 Rw1G004830 Rw1G005020 Rw2G011250 Rw2G024080 Rw2G024100 Rw3G022830 Rw6G000680 Rw6G000750 Rw6G000780 Rw6G000810 Rw6G000830 Rw6G000860 Rw6G002220 Rw6G002240 Rw6G003350 Rw6G003380 Rw6G003430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 145
AccI GTMKAC 1 cut(s) 43
AccII CGCG 1 cut(s) 467
AciI CCGC 2 cut(s) 467, 1030
AclWI GGATC 1 cut(s) 1195
AcsI RAATTY 5 cut(s) 202, 400, 1112, 1324, 1648
AcuI CTGAAG 1 cut(s) 1439
AcyI GRCGYC 1 cut(s) 751
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 2 cut(s) 1294, 1599
AfiI CCNNNNNNNGG 2 cut(s) 145, 1043
AjnI CCWGG 5 cut(s) 285, 295, 598, 1477, 1680
AjuI GAANNNNNNNTTGG 2 cut(s) 1199, 1231
AluBI AGCT 5 cut(s) 553, 1201, 1540, 1627, 1687
AluI AGCT 5 cut(s) 553, 1201, 1540, 1627, 1687
Alw21I GWGCWC 2 cut(s) 1611, 1689
Alw26I GTCTC 7 cut(s) 54, 90, 274, 446, 710, 1052, 1225
AlwI GGATC 1 cut(s) 1195
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 3 cut(s) 253, 293, 760
ApeKI GCWGC 1 cut(s) 1540
ApoI RAATTY 5 cut(s) 202, 400, 1112, 1324, 1648
AseI ATTAAT 1 cut(s) 632
Asp700I GAANNNNTTC 4 cut(s) 36, 621, 1424, 1461
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 1147, 1655
AsuII TTCGAA 1 cut(s) 330
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 1689
BbsI GAAGAC 4 cut(s) 99, 797, 1163, 1427
Bbv12I GWGCWC 2 cut(s) 1611, 1689
BbvI GCAGC 1 cut(s) 1527
BccI CCATC 9 cut(s) 139, 534, 671, 824, 1264, 1280, 1515, 1620, 1674
BcgI CGANNNNNNTGC 2 cut(s) 701, 735
BciT130I CCWGG 5 cut(s) 287, 297, 600, 1479, 1682
BcoDI GTCTC 7 cut(s) 54, 90, 274, 446, 710, 1052, 1225
BfaI CTAG 2 cut(s) 1271, 1753
BfuAI ACCTGC 1 cut(s) 1080
BglI GCCNNNNNGGC 1 cut(s) 759
BglII AGATCT 2 cut(s) 311, 493
BisI GCNGC 1 cut(s) 1541
BlsI GCNGC 1 cut(s) 1542
Bme1390I CCNGG 5 cut(s) 287, 297, 600, 1479, 1682
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 5 cut(s) 287, 297, 600, 1479, 1682
BmsI GCATC 5 cut(s) 848, 989, 1306, 1328, 1382
BpiI GAAGAC 4 cut(s) 99, 797, 1163, 1427
BpmI CTGGAG 2 cut(s) 1530, 1703
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 4 cut(s) 298, 503, 608, 1223
BsaBI GATNNNNATC 1 cut(s) 1635
BsaHI GRCGYC 1 cut(s) 751
BsaI GGTCTC 3 cut(s) 90, 446, 1052
BsaJI CCNNGG 3 cut(s) 139, 296, 535
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 1043
Bse8I GATNNNNATC 1 cut(s) 1635
BseBI CCWGG 5 cut(s) 287, 297, 600, 1479, 1682
BseDI CCNNGG 3 cut(s) 139, 296, 535
BseGI GGATG 6 cut(s) 96, 150, 509, 863, 1004, 1397
BseJI GATNNNNATC 1 cut(s) 1635
BseLI CCNNNNNNNGG 2 cut(s) 145, 1043
BseMII CTCAG 2 cut(s) 746, 1485
BseXI GCAGC 1 cut(s) 1527
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 3 cut(s) 255, 295, 762
BsiHKAI GWGCWC 2 cut(s) 1611, 1689
BsiHKCI CYCGRG 1 cut(s) 668
BslI CCNNNNNNNGG 2 cut(s) 145, 1043
BsmAI GTCTC 7 cut(s) 54, 90, 274, 446, 710, 1052, 1225
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 3 cut(s) 255, 295, 762
Bso31I GGTCTC 3 cut(s) 90, 446, 1052
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 1611, 1689
Bsp143I GATC 5 cut(s) 311, 493, 706, 961, 1187
BspACI CCGC 2 cut(s) 467, 1030
BspANI GGCC 3 cut(s) 255, 295, 762
BspCNI CTCAG 2 cut(s) 747, 1486
BspFNI CGCG 1 cut(s) 467
BspHI TCATGA 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 1195
BspT104I TTCGAA 1 cut(s) 330
BspTNI GGTCTC 3 cut(s) 90, 446, 1052
BssECI CCNNGG 3 cut(s) 139, 296, 535
BssMI GATC 5 cut(s) 311, 493, 706, 961, 1187
BssNI GRCGYC 1 cut(s) 751
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 5 cut(s) 287, 297, 600, 1479, 1682
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 3 cut(s) 627, 1690, 1737
BstACI GRCGYC 1 cut(s) 751
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBI TTCGAA 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 469, 1034, 1725
BstDEI CTNAG 5 cut(s) 755, 779, 1148, 1197, 1494
BstEII GGTNACC 1 cut(s) 1135
BstF5I GGATG 6 cut(s) 96, 150, 509, 863, 1004, 1397
BstFNI CGCG 1 cut(s) 467
BstKTI GATC 5 cut(s) 314, 496, 709, 964, 1190
BstMAI GTCTC 7 cut(s) 54, 90, 274, 446, 710, 1052, 1225
BstMBI GATC 5 cut(s) 311, 493, 706, 961, 1187
BstMWI GCNNNNNNNGC 4 cut(s) 10, 759, 1089, 1198
BstNI CCWGG 5 cut(s) 287, 297, 600, 1479, 1682
BstNSI RCATGY 1 cut(s) 977
BstPI GGTNACC 1 cut(s) 1135
BstSCI CCNGG 5 cut(s) 285, 295, 598, 1477, 1680
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 1527
BstV2I GAAGAC 4 cut(s) 99, 797, 1163, 1427
BstX2I RGATCY 2 cut(s) 311, 493
BstXI CCANNNNNNTGG 1 cut(s) 1514
BstYI RGATCY 2 cut(s) 311, 493
BsuRI GGCC 3 cut(s) 255, 295, 762
BtsCI GGATG 6 cut(s) 96, 150, 509, 863, 1004, 1397
BtsIMutI CAGTG 1 cut(s) 1298
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 3 cut(s) 469, 1034, 1725
CciI TCATGA 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 3 cut(s) 680, 759, 1357
Csp6I GTAC 2 cut(s) 1293, 1598
CviAII CATG 8 cut(s) 5, 89, 104, 862, 974, 995, 1429, 1604
CviQI GTAC 2 cut(s) 1293, 1598
DdeI CTNAG 5 cut(s) 755, 779, 1148, 1197, 1494
DpnI GATC 5 cut(s) 313, 495, 708, 963, 1189
DpnII GATC 5 cut(s) 311, 493, 706, 961, 1187
DraIII CACNNNGTG 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 627, 1690, 1737
EarI CTCTTC 3 cut(s) 627, 1690, 1737
Ecl136II GAGCTC 1 cut(s) 1687
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 1689
Eco31I GGTCTC 3 cut(s) 90, 446, 1052
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 1687
Eco57I CTGAAG 1 cut(s) 1439
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 1135
EcoICRI GAGCTC 1 cut(s) 1687
EcoO65I GGTNACC 1 cut(s) 1135
EcoRII CCWGG 5 cut(s) 285, 295, 598, 1477, 1680
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 3 cut(s) 6, 863, 1321
EcoT38I GRGCYC 1 cut(s) 1689
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 8 cut(s) 8, 92, 107, 865, 977, 998, 1432, 1607
FatI CATG 8 cut(s) 4, 88, 103, 861, 973, 994, 1428, 1603
FauI CCCGC 1 cut(s) 460
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 1541
FokI GGATG 6 cut(s) 83, 157, 516, 870, 1011, 1404
FriOI GRGCYC 1 cut(s) 1689
Fsp4HI GCNGC 1 cut(s) 1541
FspBI CTAG 2 cut(s) 1271, 1753
GluI GCNGC 1 cut(s) 1541
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 2 cut(s) 1530, 1703
HaeIII GGCC 3 cut(s) 255, 295, 762
HgaI GACGC 3 cut(s) 680, 759, 1357
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 8 cut(s) 8, 92, 107, 865, 977, 998, 1432, 1607
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HindIII AAGCTT 2 cut(s) 551, 1199
HphI GGTGA 2 cut(s) 1147, 1655
Hpy166II GTNNAC 2 cut(s) 44, 241
Hpy188I TCNGA 7 cut(s) 211, 337, 477, 539, 1068, 1249, 1447
Hpy8I GTNNAC 2 cut(s) 44, 241
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 5 cut(s) 205, 254, 494, 1088, 1262
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 9 cut(s) 4, 789, 861, 938, 1083, 1227, 1319, 1395, 1727
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 759, 1089, 1198
HpyF3I CTNAG 5 cut(s) 755, 779, 1148, 1197, 1494
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 8 cut(s) 8, 92, 107, 865, 977, 998, 1432, 1607
Kzo9I GATC 5 cut(s) 311, 493, 706, 961, 1187
LmnI GCTCC 3 cut(s) 688, 1097, 1684
Lsp1109I GCAGC 1 cut(s) 1527
LweI GCATC 5 cut(s) 848, 989, 1306, 1328, 1382
MaeI CTAG 2 cut(s) 1271, 1753
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 4 cut(s) 362, 782, 1118, 1135
MalI GATC 5 cut(s) 313, 495, 708, 963, 1189
MboI GATC 5 cut(s) 311, 493, 706, 961, 1187
MboII GAAGA 9 cut(s) 104, 124, 212, 614, 797, 1163, 1432, 1707, 1754
MfeI CAATTG 2 cut(s) 744, 1363
MflI RGATCY 2 cut(s) 311, 493
MhlI GDGCHC 2 cut(s) 1611, 1689
MlyI GAGTC 2 cut(s) 68, 276
Mph1103I ATGCAT 3 cut(s) 6, 863, 1321
MroXI GAANNNNTTC 4 cut(s) 36, 621, 1424, 1461
MslI CAYNNNNRTG 1 cut(s) 1512
MspR9I CCNGG 5 cut(s) 287, 297, 600, 1479, 1682
MunI CAATTG 2 cut(s) 744, 1363
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 5 cut(s) 287, 297, 600, 1479, 1682
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 4 cut(s) 10, 759, 1089, 1198
NdeII GATC 5 cut(s) 311, 493, 706, 961, 1187
NlaIII CATG 8 cut(s) 8, 92, 107, 865, 977, 998, 1432, 1607
NmuCI GTSAC 2 cut(s) 362, 1135
NsiI ATGCAT 3 cut(s) 6, 863, 1321
NspI RCATGY 1 cut(s) 977
NspV TTCGAA 1 cut(s) 330
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 1 cut(s) 255
PctI GAATGC 1 cut(s) 471
PdmI GAANNNNTTC 4 cut(s) 36, 621, 1424, 1461
PflMI CCANNNNNTGG 1 cut(s) 145
PfoI TCCNGGA 2 cut(s) 285, 1477
PkrI GCNGC 1 cut(s) 1542
PleI GAGTC 2 cut(s) 67, 276
PpsI GAGTC 2 cut(s) 67, 276
PshBI ATTAAT 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 1689
Psp6I CCWGG 5 cut(s) 285, 295, 598, 1477, 1680
PspEI GGTNACC 1 cut(s) 1135
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 5 cut(s) 285, 295, 598, 1477, 1680
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 311, 493
RsaI GTAC 2 cut(s) 1294, 1599
RsaNI GTAC 2 cut(s) 1293, 1598
RseI CAYNNNNRTG 1 cut(s) 1512
SacI GAGCTC 1 cut(s) 1689
SalI GTCGAC 1 cut(s) 42
SatI GCNGC 1 cut(s) 1541
Sau3AI GATC 5 cut(s) 311, 493, 706, 961, 1187
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 68, 276
ScrFI CCNGG 5 cut(s) 287, 297, 600, 1479, 1682
SduI GDGCHC 2 cut(s) 1611, 1689
SfaNI GCATC 5 cut(s) 848, 989, 1306, 1328, 1382
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 1512
SmlI CTYRAG 4 cut(s) 277, 482, 587, 1202
SmoI CTYRAG 4 cut(s) 277, 482, 587, 1202
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 2 cut(s) 467, 1030
SspI AATATT 2 cut(s) 373, 1489
SspMI CTAG 2 cut(s) 1271, 1753
SstI GAGCTC 1 cut(s) 1689
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 5 cut(s) 285, 295, 598, 1477, 1680
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 73
TaqI TCGA 4 cut(s) 43, 330, 711, 1510
TatI WGTACW 2 cut(s) 1292, 1597
TscAI CASTG 1 cut(s) 1305
TseFI GTSAC 2 cut(s) 362, 1135
TseI GCWGC 1 cut(s) 1540
Tsp45I GTSAC 2 cut(s) 362, 1135
TspGWI ACGGA 2 cut(s) 294, 791
TspRI CASTG 1 cut(s) 1305
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 5 cut(s) 202, 400, 1112, 1324, 1648
XceI RCATGY 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 1514
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 4 cut(s) 36, 621, 1424, 1461
XspI CTAG 2 cut(s) 1271, 1753
Zsp2I ATGCAT 3 cut(s) 6, 863, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.