Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

68816 .. 71404

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006223.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

atgaaacctattttcattcctctttacccttccagcttgtttctactgttcgtcaccctactggtggccggcgagtccgcacctatctactctccatccgatgatattacccttaactgcggctcttccggcgacacggtcagtaattatgattttcaaacttggacgggagacatcaactcaaagtttttccccgaagaagctggtagcacatcccaagtcgcaaaagcaccaccgtcgtcctccaccggcagccaagtaccgtacacctcagctcggctttcacactcggaatttacttacagctttcccgtcagtccaggccagaagttcatccgcttgtatttcttaccagctacatacaacgcggacttcgaccgctcgaaatcacttttctctgtcaaagccggtggctacacacttctcaaggacttcaacgcttctctcggtagtatttacgatggctctgagacactactcagagaattctgcctcaactttgaaccagatcagcggagtctgaacatcacattcactcccagccagggtggatacgcttttattaacgggatcgaaatcatgtccatgccaaccaatctttaccactcggcagcccaaggcgatggggctagttatctcggcaacagcggtagcagatattatgttgaaaacaacaccgctctggagatgatcttccgaatcaacgttggtggcagcccagtatctccgaatgaagacaccggcatgtaccgcacctgggatccaatcgacgagttctacttggatgatctaagtagaaatttgagcgctgcacgaagatataatactcctgtcaattttgcaagaatccctaactacactgctcccgaagaggtgtaccgaacaggccggacaatgggagggaccagtaccatcaacaagagctacaatctcacctggggattccctgtagatcccgacttttcttacctggtgaggctccatttctgtgagattgacccaaatatttccaaggcttggggtagagtgtttcagatattcatagccaatttaacagctgaaccgttcgcggacataatcagatggactacagaaaatggagaaggaaatgggattcccatctatagggactactttgtaccggtgccgatatttggaacccagaagaaaggttccgttaatctctttgttgcactacaagcatatcaagacgattattacactcaatataacgatgcgatcttgaatgggctggaaatcttcaaacttaatgacacagacggcaatctcggcggacccatccccgagctaccgaatatcccgccaaaggtgacgtcggaaagctctagaaactcgaagaagaagtcgactcctatgcttgctatcatcgccggtgtagtttcggccttacttgttctttccttcctcgggtttttagttttcaggcgtggacgaaaagtcaaggattccaaatccagccacaggatgacaacgtcaaccatgacccttaggtcaccttatccatcttatttgtgccgtgacttttcactggcagagatcaaagccgccaccaaaaacttcgatgacactttaattgttggagtcggtgggtttggccatgtctacaaaggatacttcgacaatggggccacccttgtggcaatcaaacggctgaaagccacttcatcgcagggggcccacgagttcatgacggaaatcaaaatgctctcccgattgcgccatcgtcatttggtttctcttataggattttgtgccgatcaaggtgagatgatcttagtctacgattacatggcacatgggaccctccgtgatcatttgcaccggaccaaggaaccacatcttccttggaaactacggcttcacatttgtattggtgcagcacaaggtttgcaccaccttcacacaggtaccgaaggcatcatcattcaccgtgatgtaaagagcacaaacatattattagacgagaaatgggtagcgaaggtttcagattttgggttgtcaaaaaagggcattatcacaatatccaagacccacattagcacgaaggtgaagggtagttttggatatcttgaccctgattactaccgacgtcaacaactgactgagaagtctgacgtgtattcattcggcgtagtgttatgcgaggtattgtgtgggaggccagccgtgaccattgtagataataatagagttgggctagctggttgggtcaagaagtgtcatcatgaagggaaacttgatcaaattgttgacccaaatttgaagggtgaaattgcattgcgatgcttgcataaatttgtttccatcgcaatcagttgcatggatgataatgggatcaatcggccgtcaatggagaatgttgtgagagggcttcagtttgcatttgaaatgcaacagaacaatgagaattatattgatcacattgaaaggatggttcaagatgagattggattgatcaaggacaatgaagggtctagttctagtgagcgaagcagtggggcgaaagaatccatccaaaggttgaccgggacaatcttctccgagatcatcaatccagttgggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

862

Amino Acids

96.07

Weight (kDa)

6.9

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1510, 2128
AatII	GACGTC	2 cut(s)	1337, 2113
Acc65I	GGTACC	1 cut(s)	1928
AccB1I	GGYRCC	2 cut(s)	1144, 1928
AccB7I	CCANNNNNTGG	1 cut(s)	1017
AccBSI	CCGCTC	2 cut(s)	381, 680
AccI	GTMKAC	3 cut(s)	1367, 1623, 1800
AccII	CGCG	2 cut(s)	368, 1070
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	5 cut(s)	578, 755, 768, 947, 2363
AcoI	YGGCCR	3 cut(s)	66, 1615, 2363
AcsI	RAATTY	5 cut(s)	293, 485, 799, 2278, 2315
AcuI	CTGAAG	1 cut(s)	2378
AcyI	GRCGYC	2 cut(s)	1334, 2110
AfaI	GTAC	7 cut(s)	261, 266, 749, 878, 910, 1140, 1930
AfeI	AGCGCT	1 cut(s)	808
AflIII	ACRYGT	1 cut(s)	2136
AgeI	ACCGGT	1 cut(s)	1141
AhdI	GACNNNNNGTC	1 cut(s)	1457
AjiI	CACGTC	1 cut(s)	2137
AjnI	CCWGG	5 cut(s)	319, 543, 755, 935, 969
AleI	CACNNNNGTG	2 cut(s)	1655, 2066
Alw21I	GWGCWC	1 cut(s)	1967
Alw26I	GTCTC	2 cut(s)	165, 464
AlwI	GGATC	5 cut(s)	578, 755, 768, 947, 2363
Ama87I	CYCGRG	2 cut(s)	1304, 1427
Aor51HI	AGCGCT	1 cut(s)	808
AoxI	GGCC	9 cut(s)	66, 322, 886, 1404, 1615, 1647, 1695, 2180, 2363
ApaI	GGGCCC	1 cut(s)	1699
ApeKI	GCWGC	5 cut(s)	252, 611, 714, 809, 1898
ApoI	RAATTY	5 cut(s)	293, 485, 799, 2278, 2315
ArsI	GACNNNNNNTTYG	4 cut(s)	1319, 1349, 1351, 1381
AsiGI	ACCGGT	1 cut(s)	1141
Asp718I	GGTACC	1 cut(s)	1928
AspLEI	GCGC	2 cut(s)	809, 1740
AspS9I	GGNCC	7 cut(s)	903, 1295, 1647, 1695, 1696, 1821, 1845
AsuC2I	CCSGG	1 cut(s)	2548
AsuHPI	GGTGA	9 cut(s)	46, 925, 985, 1342, 1506, 1796, 1940, 2080, 2300
AsuNHI	GCTAGC	1 cut(s)	2218
AvaI	CYCGRG	2 cut(s)	1304, 1427
AvaII	GGWCC	4 cut(s)	903, 1295, 1821, 1845
AxyI	CCTNAGG	1 cut(s)	1508
BaeGI	GKGCMC	1 cut(s)	1699
BaeI	ACNNNNGTAYC	2 cut(s)	1912, 1945
BalI	TGGCCA	1 cut(s)	1617
BamHI	GGATCC	1 cut(s)	760
BanI	GGYRCC	2 cut(s)	1144, 1928
BanII	GRGCYC	1 cut(s)	1699
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
BauI	CACGAG	1 cut(s)	1700
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	1967
BbvCI	CCTCAGC	1 cut(s)	271
BbvI	GCAGC	5 cut(s)	264, 623, 726, 796, 1910
BceAI	ACGGC	6 cut(s)	1297, 1521, 1685, 1892, 2171, 2350
BcgI	CGANNNNNNTGC	4 cut(s)	219, 253, 1357, 1391
BciT130I	CCWGG	5 cut(s)	321, 545, 757, 937, 971
BciVI	GTATCC	2 cut(s)	545, 1625
BclI	TGATCA	4 cut(s)	1831, 2260, 2437, 2475
BcnI	CCSGG	1 cut(s)	2548
BcoDI	GTCTC	2 cut(s)	165, 464
BfaI	CTAG	5 cut(s)	630, 1347, 2219, 2496, 2502
BfmI	CTRYAG	3 cut(s)	948, 1089, 1123
BfoI	RGCGCY	1 cut(s)	810
BfuI	GTATCC	2 cut(s)	545, 1625
BisI	GCNGC	7 cut(s)	121, 253, 612, 715, 810, 1566, 1899
BlsI	GCNGC	7 cut(s)	122, 254, 613, 716, 811, 1567, 1900
Bme1390I	CCNGG	6 cut(s)	321, 545, 757, 937, 971, 2548
Bme18I	GGWCC	4 cut(s)	903, 1295, 1821, 1845
BmeRI	GACNNNNNGTC	1 cut(s)	1457
BmeT110I	CYCGRG	2 cut(s)	1304, 1427
BmgBI	CACGTC	1 cut(s)	2137
BmgT120I	GGNCC	7 cut(s)	903, 1295, 1647, 1695, 1696, 1821, 1845
BmrFI	CCNGG	6 cut(s)	321, 545, 757, 937, 971, 2548
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	3 cut(s)	1225, 1947, 2294
BmtI	GCTAGC	1 cut(s)	2222
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	2548
BsaBI	GATNNNNATC	2 cut(s)	575, 1118
BsaHI	GRCGYC	2 cut(s)	1334, 2110
BsaJI	CCNNGG	8 cut(s)	544, 616, 756, 936, 1011, 1426, 1848, 1865
BsaWI	WCCGGW	2 cut(s)	1141, 1842
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bse118I	RCCGGY	6 cut(s)	68, 248, 407, 740, 1141, 1391
Bse1I	ACTGG	5 cut(s)	66, 719, 906, 1554, 2576
Bse21I	CCTNAGG	1 cut(s)	1508
Bse3DI	GCAATG	1 cut(s)	2297
Bse8I	GATNNNNATC	2 cut(s)	575, 1118
BseBI	CCWGG	5 cut(s)	321, 545, 757, 937, 971
BseDI	CCNNGG	8 cut(s)	544, 616, 756, 936, 1011, 1426, 1848, 1865
BseGI	GGATG	9 cut(s)	95, 212, 333, 790, 1299, 1491, 2350, 2457, 2532
BseJI	GATNNNNATC	2 cut(s)	575, 1118
BseMI	GCAATG	1 cut(s)	2297
BseMII	CTCAG	4 cut(s)	285, 459, 493, 2115
BseNI	ACTGG	5 cut(s)	66, 719, 906, 1554, 2576
BseSI	GKGCMC	1 cut(s)	1699
BseX3I	CGGCCG	1 cut(s)	2363
BseXI	GCAGC	5 cut(s)	264, 623, 726, 796, 1910
BseYI	CCCAGC	1 cut(s)	539
BsgI	GTGCAG	2 cut(s)	795, 1917
Bsh1236I	CGCG	2 cut(s)	368, 1070
Bsh1285I	CGRYCG	2 cut(s)	379, 2366
BshFI	GGCC	9 cut(s)	68, 324, 888, 1406, 1617, 1649, 1697, 2182, 2365
BshNI	GGYRCC	2 cut(s)	1144, 1928
BshTI	ACCGGT	1 cut(s)	1141
BsiEI	CGRYCG	2 cut(s)	379, 2366
BsiHKAI	GWGCWC	1 cut(s)	1967
BsiHKCI	CYCGRG	2 cut(s)	1304, 1427
BslFI	GGGAC	4 cut(s)	916, 1142, 1834, 2563
BsmAI	GTCTC	2 cut(s)	165, 464
BsmFI	GGGAC	4 cut(s)	916, 1142, 1834, 2563
BsnI	GGCC	9 cut(s)	68, 324, 888, 1406, 1617, 1649, 1697, 2182, 2365
BsoBI	CYCGRG	2 cut(s)	1304, 1427
Bsp120I	GGGCCC	1 cut(s)	1695
Bsp1286I	GDGCHC	2 cut(s)	1699, 1967
BspANI	GGCC	9 cut(s)	68, 324, 888, 1406, 1617, 1649, 1697, 2182, 2365
BspCNI	CTCAG	4 cut(s)	284, 460, 492, 2116
BspFNI	CGCG	2 cut(s)	368, 1070
BspHI	TCATGA	2 cut(s)	1707, 2245
BspOI	GCTAGC	1 cut(s)	2222
BspPI	GGATC	5 cut(s)	578, 755, 768, 947, 2363
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	2 cut(s)	1144, 1928
BsrBI	CCGCTC	2 cut(s)	381, 680
BsrDI	GCAATG	1 cut(s)	2297
BsrFI	RCCGGY	6 cut(s)	68, 248, 407, 740, 1141, 1391
BsrI	ACTGG	5 cut(s)	66, 719, 906, 1554, 2576
BssAI	RCCGGY	6 cut(s)	68, 248, 407, 740, 1141, 1391
BssECI	CCNNGG	8 cut(s)	544, 616, 756, 936, 1011, 1426, 1848, 1865
BssNI	GRCGYC	2 cut(s)	1334, 2110
BssSI	CACGAG	1 cut(s)	1700
BssT1I	CCWWGG	4 cut(s)	616, 1011, 1848, 1865
Bst2BI	CACGAG	1 cut(s)	1700
Bst2UI	CCWGG	5 cut(s)	321, 545, 757, 937, 971
Bst4CI	ACNGT	6 cut(s)	48, 139, 237, 264, 1065, 1952
Bst6I	CTCTTC	2 cut(s)	130, 864
BstACI	GRCGYC	2 cut(s)	1334, 2110
BstC8I	GCNNGC	5 cut(s)	70, 1380, 2184, 2220, 2309
BstDEI	CTNAG	7 cut(s)	271, 468, 479, 791, 1508, 1795, 2124
BstEII	GGTNACC	1 cut(s)	1512
BstF5I	GGATG	9 cut(s)	95, 212, 333, 790, 1299, 1491, 2350, 2457, 2532
BstFNI	CGCG	2 cut(s)	368, 1070
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	2 cut(s)	809, 1740
BstMAI	GTCTC	2 cut(s)	165, 464
BstMCI	CGRYCG	2 cut(s)	379, 2366
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 750, 1199, 1290, 1388, 2308
BstNI	CCWGG	5 cut(s)	321, 545, 757, 937, 971
BstNSI	RCATGY	1 cut(s)	748
BstPI	GGTNACC	1 cut(s)	1512
BstSCI	CCNGG	6 cut(s)	319, 543, 755, 935, 969, 2546
BstSFI	CTRYAG	3 cut(s)	948, 1089, 1123
BstSLI	GKGCMC	1 cut(s)	1699
BstUI	CGCG	2 cut(s)	368, 1070
BstV1I	GCAGC	5 cut(s)	264, 623, 726, 796, 1910
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	2 cut(s)	760, 952
BstXI	CCANNNNNNTGG	2 cut(s)	623, 1657
BstYI	RGATCY	2 cut(s)	760, 952
BstZI	CGGCCG	1 cut(s)	2363
Bsu36I	CCTNAGG	1 cut(s)	1508
BsuI	GTATCC	2 cut(s)	545, 1625
BsuRI	GGCC	9 cut(s)	68, 324, 888, 1406, 1617, 1649, 1697, 2182, 2365
BtgZI	GCGATG	5 cut(s)	636, 1372, 1671, 2311, 2317
BtrI	CACGTC	1 cut(s)	2137
BtsCI	GGATG	9 cut(s)	95, 212, 333, 790, 1299, 1491, 2350, 2457, 2532
BtsI	GCAGTG	2 cut(s)	858, 2521
BtsIMutI	CAGTG	3 cut(s)	858, 1547, 2521
Cac8I	GCNNGC	5 cut(s)	70, 1380, 2184, 2220, 2309
CciI	TCATGA	2 cut(s)	1707, 2245
CfoI	GCGC	2 cut(s)	809, 1740
Cfr10I	RCCGGY	6 cut(s)	68, 248, 407, 740, 1141, 1391
Cfr13I	GGNCC	7 cut(s)	903, 1295, 1647, 1695, 1696, 1821, 1845
CsiI	ACCWGGT	1 cut(s)	969
Csp6I	GTAC	7 cut(s)	260, 265, 748, 877, 909, 1139, 1929
CspAI	ACCGGT	1 cut(s)	1141
CspCI	CAANNNNNGTGG	4 cut(s)	391, 426, 691, 726
CviQI	GTAC	7 cut(s)	260, 265, 748, 877, 909, 1139, 1929
DdeI	CTNAG	7 cut(s)	271, 468, 479, 791, 1508, 1795, 2124
DrdI	GACNNNNNNGTC	2 cut(s)	1510, 2128
DriI	GACNNNNNGTC	1 cut(s)	1457
DseDI	GACNNNNNNGTC	2 cut(s)	1510, 2128
EaeI	YGGCCR	3 cut(s)	66, 1615, 2363
EagI	CGGCCG	1 cut(s)	2363
Eam1104I	CTCTTC	2 cut(s)	130, 864
Eam1105I	GACNNNNNGTC	1 cut(s)	1457
EarI	CTCTTC	2 cut(s)	130, 864
EciI	GGCGGA	1 cut(s)	1308
EclXI	CGGCCG	1 cut(s)	2363
Eco130I	CCWWGG	4 cut(s)	616, 1011, 1848, 1865
Eco24I	GRGCYC	1 cut(s)	1699
Eco32I	GATATC	1 cut(s)	2087
Eco47I	GGWCC	4 cut(s)	903, 1295, 1821, 1845
Eco47III	AGCGCT	1 cut(s)	808
Eco52I	CGGCCG	1 cut(s)	2363
Eco57I	CTGAAG	1 cut(s)	2378
Eco81I	CCTNAGG	1 cut(s)	1508
Eco88I	CYCGRG	2 cut(s)	1304, 1427
Eco91I	GGTNACC	1 cut(s)	1512
EcoO109I	RGGNCCY	2 cut(s)	1695, 1821
EcoO65I	GGTNACC	1 cut(s)	1512
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	5 cut(s)	319, 543, 755, 935, 969
EcoRV	GATATC	1 cut(s)	2087
EcoT14I	CCWWGG	4 cut(s)	616, 1011, 1848, 1865
EcoT38I	GRGCYC	1 cut(s)	1699
ErhI	CCWWGG	4 cut(s)	616, 1011, 1848, 1865
FalI	AAGNNNNNCTT	2 cut(s)	2241, 2273
FaqI	GGGAC	4 cut(s)	916, 1142, 1834, 2563
FauI	CCCGC	1 cut(s)	1329
FbaI	TGATCA	4 cut(s)	1831, 2260, 2437, 2475
FblI	GTMKAC	3 cut(s)	1367, 1623, 1800
Fnu4HI	GCNGC	7 cut(s)	121, 253, 612, 715, 810, 1566, 1899
FokI	GGATG	9 cut(s)	82, 199, 320, 797, 1286, 1498, 2357, 2464, 2519
FriOI	GRGCYC	1 cut(s)	1699
Fsp4HI	GCNGC	7 cut(s)	121, 253, 612, 715, 810, 1566, 1899
FspBI	CTAG	5 cut(s)	630, 1347, 2219, 2496, 2502
GlaI	GCGC	2 cut(s)	808, 1739
GluI	GCNGC	7 cut(s)	121, 253, 612, 715, 810, 1566, 1899
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	704
HaeII	RGCGCY	1 cut(s)	810
HaeIII	GGCC	9 cut(s)	68, 324, 888, 1406, 1617, 1649, 1697, 2182, 2365
HhaI	GCGC	2 cut(s)	809, 1740
Hin1I	GRCGYC	2 cut(s)	1334, 2110
Hin6I	GCGC	2 cut(s)	807, 1738
HinP1I	GCGC	2 cut(s)	807, 1738
HincII	GTYRAC	5 cut(s)	1368, 1497, 2114, 2272, 2544
HindII	GTYRAC	5 cut(s)	1368, 1497, 2114, 2272, 2544
HphI	GGTGA	9 cut(s)	46, 925, 985, 1342, 1506, 1796, 1940, 2080, 2300
Hpy99I	CGWCG	4 cut(s)	241, 773, 1339, 2112
HpyCH4III	ACNGT	6 cut(s)	48, 139, 237, 264, 1065, 1952
HpyCH4IV	ACGT	5 cut(s)	705, 1334, 1493, 2110, 2136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 750, 1199, 1290, 1388, 2308
HpyF3I	CTNAG	7 cut(s)	271, 468, 479, 791, 1508, 1795, 2124
HpySE526I	ACGT	5 cut(s)	705, 1334, 1493, 2110, 2136
Hsp92I	GRCGYC	2 cut(s)	1334, 2110
HspAI	GCGC	2 cut(s)	807, 1738
KflI	GGGWCCC	1 cut(s)	1821
KpnI	GGTACC	1 cut(s)	1932
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	4 cut(s)	1831, 2260, 2437, 2475
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	868, 984
Lsp1109I	GCAGC	5 cut(s)	264, 623, 726, 796, 1910
LweI	GCATC	3 cut(s)	1225, 1947, 2294
MabI	ACCWGGT	1 cut(s)	969
MaeI	CTAG	5 cut(s)	630, 1347, 2219, 2496, 2502
MaeII	ACGT	5 cut(s)	705, 1334, 1493, 2110, 2136
MaeIII	GTNAC	5 cut(s)	52, 1330, 1512, 1538, 2188
MbiI	CCGCTC	2 cut(s)	381, 680
MflI	RGATCY	2 cut(s)	760, 952
MhlI	GDGCHC	2 cut(s)	1699, 1967
MlsI	TGGCCA	1 cut(s)	1617
MluNI	TGGCCA	1 cut(s)	1617
MlyI	GAGTC	4 cut(s)	83, 526, 1363, 1611
MmeI	TCCRAC	2 cut(s)	1317, 1579
Mox20I	TGGCCA	1 cut(s)	1617
MroNI	GCCGGC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	1617
MseI	TTAA	6 cut(s)	114, 564, 1052, 1179, 1269, 1592
MslI	CAYNNNNRTG	7 cut(s)	584, 743, 987, 1655, 1953, 2066, 2302
Msp20I	TGGCCA	1 cut(s)	1617
MspA1I	CMGCKG	3 cut(s)	514, 648, 1058
MspR9I	CCNGG	6 cut(s)	321, 545, 757, 937, 971, 2548
MvaI	CCWGG	5 cut(s)	321, 545, 757, 937, 971
MvnI	CGCG	2 cut(s)	368, 1070
MwoI	GCNNNNNNNGC	6 cut(s)	129, 750, 1199, 1290, 1388, 2308
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	2548
NgoMIV	GCCGGC	1 cut(s)	68
NheI	GCTAGC	1 cut(s)	2218
NmeAIII	GCCGAG	4 cut(s)	256, 587, 618, 1269
NmuCI	GTSAC	5 cut(s)	52, 1330, 1512, 1538, 2188
NspI	RCATGY	1 cut(s)	748
OliI	CACNNNNGTG	2 cut(s)	1655, 2066
PagI	TCATGA	2 cut(s)	1707, 2245
PciSI	GCTCTTC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	6 cut(s)	699, 846, 942, 1114, 1466, 2528
PflFI	GACNNNGTC	2 cut(s)	137, 1492
PflMI	CCANNNNNTGG	1 cut(s)	1017
PinAI	ACCGGT	1 cut(s)	1141
PkrI	GCNGC	7 cut(s)	122, 254, 613, 716, 811, 1567, 1900
PleI	GAGTC	4 cut(s)	82, 525, 1363, 1610
PpsI	GAGTC	4 cut(s)	82, 525, 1363, 1610
PpuMI	RGGWCCY	1 cut(s)	1821
Psp1406I	AACGTT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	1821
Psp6I	CCWGG	5 cut(s)	319, 543, 755, 935, 969
PspEI	GGTNACC	1 cut(s)	1512
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	5 cut(s)	319, 543, 755, 935, 969
PspOMI	GGGCCC	1 cut(s)	1695
PspPI	GGNCC	7 cut(s)	903, 1295, 1647, 1695, 1696, 1821, 1845
PspPPI	RGGWCCY	1 cut(s)	1821
PsuI	RGATCY	2 cut(s)	760, 952
PsyI	GACNNNGTC	2 cut(s)	137, 1492
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	7 cut(s)	261, 266, 749, 878, 910, 1140, 1930
RsaNI	GTAC	7 cut(s)	260, 265, 748, 877, 909, 1139, 1929
RseI	CAYNNNNRTG	7 cut(s)	584, 743, 987, 1655, 1953, 2066, 2302
SalI	GTCGAC	1 cut(s)	1366
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	6 cut(s)	114, 564, 1052, 1179, 1269, 1592
SatI	GCNGC	7 cut(s)	121, 253, 612, 715, 810, 1566, 1899
Sau96I	GGNCC	7 cut(s)	903, 1295, 1647, 1695, 1696, 1821, 1845
SchI	GAGTC	4 cut(s)	83, 526, 1363, 1611
ScrFI	CCNGG	6 cut(s)	321, 545, 757, 937, 971, 2548
SduI	GDGCHC	2 cut(s)	1699, 1967
SexAI	ACCWGGT	1 cut(s)	969
SfaNI	GCATC	3 cut(s)	1225, 1947, 2294
SfcI	CTRYAG	3 cut(s)	948, 1089, 1123
SgrAI	CRCCGGYG	1 cut(s)	1391
SinI	GGWCC	4 cut(s)	903, 1295, 1821, 1845
SmiMI	CAYNNNNRTG	7 cut(s)	584, 743, 987, 1655, 1953, 2066, 2302
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	5 cut(s)	630, 1347, 2219, 2496, 2502
StyD4I	CCNGG	6 cut(s)	319, 543, 755, 935, 969, 2546
StyI	CCWWGG	4 cut(s)	616, 1011, 1848, 1865
TaaI	ACNGT	6 cut(s)	48, 139, 237, 264, 1065, 1952
TaiI	ACGT	5 cut(s)	708, 1337, 1496, 2113, 2139
TaqI	TCGA	8 cut(s)	375, 383, 573, 768, 1355, 1367, 1581, 1638
TauI	GCSGC	2 cut(s)	123, 1568
TfiI	GAWTC	6 cut(s)	699, 846, 942, 1114, 1466, 2528
Tru1I	TTAA	6 cut(s)	114, 564, 1052, 1179, 1269, 1592
Tru9I	TTAA	6 cut(s)	114, 564, 1052, 1179, 1269, 1592
TscAI	CASTG	3 cut(s)	865, 1554, 2521
TseFI	GTSAC	5 cut(s)	52, 1330, 1512, 1538, 2188
TseI	GCWGC	5 cut(s)	252, 611, 714, 809, 1898
Tsp45I	GTSAC	5 cut(s)	52, 1330, 1512, 1538, 2188
TspGWI	ACGGA	3 cut(s)	1165, 1727, 1817
TspRI	CASTG	3 cut(s)	865, 1554, 2521
Tth111I	GACNNNGTC	2 cut(s)	137, 1492
Van91I	CCANNNNNTGG	1 cut(s)	1017
VpaK11BI	GGWCC	4 cut(s)	903, 1295, 1821, 1845
XapI	RAATTY	5 cut(s)	293, 485, 799, 2278, 2315
XbaI	TCTAGA	1 cut(s)	1346
XceI	RCATGY	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1863
XmiI	GTMKAC	3 cut(s)	1367, 1623, 1800
XspI	CTAG	5 cut(s)	630, 1347, 2219, 2496, 2502
ZraI	GACGTC	2 cut(s)	1335, 2111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.