Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038482.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 542

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 541 bp

atgaaaccaattctcgctcctctttaccctttcagcttcctcttcgtcaccctactggtgaccggagagtccacaaccatctactctccaaccgatgttatcaaccttgactgtggctcatccggcgacacggttgactatgattctcgaacttggagtggagatataaactcgaatctttccccaatagaagttcgtagtacatccgaggctttgcaagcatcagacagctacacgacttatttggcgccgccgtacgccacagcacggctttctcactcagaattcacttaccggtttcccgtcaatcctggccaaaagttcatccgcttgtatttctacccagattcatacaacgccaacttcgaacgctccgagtctctcttctctgtcaaagccggtggctacacccttctcaaagacttcaacgcagatgtcagtgcagaagccgattttcttgagacgatgcggaaagaattctgtattaacattgaggcagaacaacagagtctgaacatcacattcactcccagcaaagatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

180

Amino Acids

20.2

Weight (kDa)

4.49

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	247
AciI	CCGC	3 cut(s)	251, 328, 469
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	284, 476
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	202, 257
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgeI	ACCGGT	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	2 cut(s)	36, 231
AluI	AGCT	2 cut(s)	36, 231
Alw26I	GTCTC	2 cut(s)	384, 455
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	1 cut(s)	313
ApoI	RAATTY	2 cut(s)	284, 476
AsiGI	ACCGGT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	40, 70
AsuII	TTCGAA	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	247
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	238, 284
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	384, 455
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	230, 456
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	62, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	2 cut(s)	294, 398
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	3 cut(s)	119, 203, 324
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	9
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	247
BshTI	ACCGGT	1 cut(s)	294
BsiSI	CCGG	4 cut(s)	63, 123, 295, 399
BsiWI	CGTACG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	384, 455
BsmBI	CGTCTC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	366
BspACI	CCGC	3 cut(s)	251, 328, 469
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	247
BsrFI	RCCGGY	2 cut(s)	294, 398
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	2 cut(s)	294, 398
BssECI	CCNNGG	1 cut(s)	207
BssNI	GRCGYC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	113, 133
Bst6I	CTCTTC	2 cut(s)	47, 389
BstACI	GRCGYC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	280
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	119, 203, 324
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	384, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 218
BstNI	CCWGG	1 cut(s)	312
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	119, 203, 324
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	511
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	2 cut(s)	294, 398
Csp6I	GTAC	2 cut(s)	201, 256
CspAI	ACCGGT	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviJI	RGCY	9 cut(s)	36, 117, 212, 231, 271, 315, 398, 405, 449
CviKI_1	RGCY	9 cut(s)	36, 117, 212, 231, 271, 315, 398, 405, 449
CviQI	GTAC	2 cut(s)	201, 256
DdeI	CTNAG	1 cut(s)	280
DinI	GGCGCC	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	47, 389
EarI	CTCTTC	2 cut(s)	47, 389
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoRI	GAATTC	2 cut(s)	284, 476
EcoRII	CCWGG	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	455
FaiI	YATR	3 cut(s)	141, 167, 352
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	3 cut(s)	106, 190, 311
Fsp4HI	GCNGC	1 cut(s)	251
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	251
GsaI	CCCAGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	4 cut(s)	63, 123, 295, 399
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	6 cut(s)	68, 143, 175, 347, 377, 508
HpaII	CCGG	4 cut(s)	63, 123, 295, 399
HphI	GGTGA	2 cut(s)	40, 70
Hpy166II	GTNNAC	2 cut(s)	72, 136
Hpy188I	TCNGA	5 cut(s)	208, 226, 283, 376, 513
Hpy188III	TCNNGA	2 cut(s)	147, 458
Hpy8I	GTNNAC	2 cut(s)	72, 136
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	113, 133
HpyCH4V	TGCA	2 cut(s)	217, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 218
HpyF3I	CTNAG	1 cut(s)	280
Hsp92I	GRCGYC	1 cut(s)	248
HspAI	GCGC	1 cut(s)	248
KasI	GGCGCC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	22, 377
LpnPI	CCDG	8 cut(s)	41, 76, 136, 297, 308, 324, 357, 412
LweI	GCATC	2 cut(s)	230, 456
MaeIII	GTNAC	2 cut(s)	46, 58
MboII	GAAGA	2 cut(s)	34, 376
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	3 cut(s)	9, 284, 476
MluNI	TGGCCA	1 cut(s)	315
Mly113I	GGCGCC	1 cut(s)	248
MlyI	GAGTC	3 cut(s)	77, 386, 517
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	30, 50, 202, 487
Mox20I	TGGCCA	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	4 cut(s)	63, 123, 295, 399
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	123, 218
NarI	GGCGCC	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	46, 58
NspV	TTCGAA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 372
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	143, 175, 347
Pfl23II	CGTACG	1 cut(s)	255
PinAI	ACCGGT	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	3 cut(s)	76, 385, 516
PluTI	GGCGCC	1 cut(s)	251
PpsI	GAGTC	3 cut(s)	76, 385, 516
Psp6I	CCWGG	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	310
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	202, 257
RsaNI	GTAC	2 cut(s)	201, 256
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	251
SchI	GAGTC	3 cut(s)	77, 386, 517
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	3 cut(s)	38, 108, 233
SfaNI	GCATC	2 cut(s)	230, 456
SfoI	GGCGCC	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	9, 284, 476
SsiI	CCGC	3 cut(s)	251, 328, 469
SspDI	GGCGCC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	113, 133
TaqI	TCGA	3 cut(s)	148, 173, 366
TasI	AATT	3 cut(s)	9, 284, 476
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	143, 175, 347
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	46, 58
Tsp45I	GTSAC	2 cut(s)	46, 58
TspDTI	ATGAA	3 cut(s)	17, 313, 339
TspRI	CASTG	1 cut(s)	445
XapI	RAATTY	2 cut(s)	284, 476
XmnI	GAANNNNTTC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.