Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

76221302 .. 76222930

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGGGATGAACAAAACCATCAACAAGATCTACAATCTCACTTGGGGATTTCCTGTAGATCCCAAGTTTTCTTACCTGGTTCGGCTCCATTTTTGTGAGTTTGAACCTGAGATTACCTTGTCCGGAGACCGAGTGTTCCTAGTCTACATTGCCAATCAAACTGCTGAAGAACGGGCGGACATTGTCATGTGGAGTGGTGGAAATGGGATTCCAGTATACAAAGACTATATTGTGTACATGTCTGGCAGGAGAGGCCAGAAGAAAGTAAATATTTGTATCTCATTGCAAGCGAATCCAAAAGATCGGCAGACTAAATACAATAATGGCATCTTAAATGGGCTTGAAATCTTCAAACTATTTGACTCTAATGGCAATTCTGTCGATCCAAATCCAGTCCCACCACCAGCACCATTGCACAAAATTTCAAACAAGTCGACTCCTGTGATTGCCATCGTTGCAGGTGTACTCTCCAGCATACTTGTGTTCTTTGTCCTCGGATTTTTGGTCGTCAAGAGAAGATCGAAAGCTAAGGACTCCAGCTCCAACAACAGGGCGACGAAGTCTACCATGACCCCTGGATCACCTTTACCACCTTATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAGGCTGCCACCAAAAACTTCAATGATACTTTCATTATTGGAGGTGGAGGATTTGGCAATGTGTACAAAGGATGCATCAATGGTGGAGCTACTCCAGTTGCAATCAAACGACTCAAACCAGACTCATCCCAGGGTGCCCACGAGTTTAAGACGGAAATCGAGATGCTCTCCCAACTCCGTCATCGCCATTTGGTTTCGCTCATTGGATATTGTGCTGATAAAGGTGAGATGATTTTGGTATATGATTACATGGCCCGCGGAACCCTCCGTGACCATCTCTACCACACCGATAAACCACCTCTACCCTGGGACCAACGGCTTCAGATTTGTATTGGCACAGCCCGCGGGTTGCAGTACCTCCACAGTGGTACAAAGGGCACCATCATACACCGTGATGTGAAGAGCACAAACATATTATTGGATGACAAATGGGTGGCCAAAGTTTCGGATTTTGGGTTATCCAAGGGCATGAATAACATGTCCAAAACCCACATCAGCACAGTGGTGAAAGGCAGTTTTGGGTATCTGGACCCTGAATACTATCGCCGACAACGTCTGACTTCTCAGTCAGACGTGTACTCACTTGGTGTAGTGTTGTTTGAGGTATTGTGTGCGAGGCCAGCAGTGATACATACAGAAGAGCTGAAGCAAGTGAGCCTGGCTGAGTGGGCCAAGAACTGTCATCAGAATGGGCAACTTGATCAAATCATTGATCCAAGTTTGAGAGGTAAGATTGTGGCCGACTGCCTGAATAAGTTCACTGAGGTAGCTATCAGTTGCATGCATGATAATGGGACAGAACGGCCGTCCATGAATGACGTAGTAAAGGAGCTCGAGCTTGCATTGCTGCTTCAGCAAAGTGCAGAAGGGAATATCAACTGCACTGAAAGGAATGATGAAACTGAACCAAGCAGTAGTGAGCAAAGTTGTGCCACCAACAATTCTGTCAAATGTATATCTGCAACAATCTTCTCTGAGATTAACAACTCAAGTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

543

Amino Acids

60.22

Weight (kDa)

8.78

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	9 - 118	8.6e-10	Malectin-like domain
Malectin	PF11721	17 - 94	1.1e-06	Malectin domain
Pkinase	PF00069	221 - 485	1.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	222 - 487	1.3e-50	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
AasI	GACNNNNNNGTC	1 cut(s)	1192
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	2 cut(s)	761, 1004
AccI	GTMKAC	4 cut(s)	144, 216, 434, 563
AccII	CGCG	2 cut(s)	885, 972
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	5 cut(s)	176, 883, 885, 970, 972
AclWI	GGATC	4 cut(s)	53, 377, 586, 1334
AcoI	YGGCCR	3 cut(s)	1062, 1365, 1430
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	4 cut(s)	186, 932, 1292, 1463
AdeI	CACNNNGTG	1 cut(s)	1214
AfaI	GTAC	6 cut(s)	236, 465, 692, 983, 997, 1205
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	3 cut(s)	237, 1104, 1200
AgsI	TTSAA	5 cut(s)	104, 344, 352, 426, 649
AjiI	CACGTC	1 cut(s)	1201
AjnI	CCWGG	5 cut(s)	75, 574, 756, 932, 1284
AleI	CACNNNNGTG	1 cut(s)	1130
AluBI	AGCT	7 cut(s)	527, 540, 716, 1270, 1397, 1459, 1465
AluI	AGCT	7 cut(s)	527, 540, 716, 1270, 1397, 1459, 1465
Alw21I	GWGCWC	2 cut(s)	1034, 1461
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	53, 377, 586, 1334
Ama87I	CYCGRG	1 cut(s)	1460
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	7 cut(s)	253, 879, 1062, 1244, 1296, 1365, 1430
ApeKI	GCWGC	2 cut(s)	632, 1474
ApoI	RAATTY	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	1382
AspS9I	GGNCC	4 cut(s)	880, 937, 1156, 1296
AsuHPI	GGTGA	3 cut(s)	573, 863, 1144
AvaI	CYCGRG	1 cut(s)	1460
AvaII	GGWCC	2 cut(s)	937, 1156
BaeGI	GKGCMC	2 cut(s)	766, 1007
BalI	TGGCCA	1 cut(s)	1064
BanI	GGYRCC	2 cut(s)	761, 1004
BanII	GRGCYC	1 cut(s)	1461
BauI	CACGAG	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	1034, 1461
BbvI	GCAGC	2 cut(s)	619, 1461
BccI	CCATC	4 cut(s)	26, 458, 909, 1016
BceAI	ACGGC	3 cut(s)	959, 1417, 1445
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	5 cut(s)	77, 576, 758, 934, 1286
BclI	TGATCA	1 cut(s)	1327
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	449
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	633, 1475
BlsI	GCNGC	2 cut(s)	634, 1476
Bme1390I	CCNGG	5 cut(s)	77, 576, 758, 934, 1286
Bme18I	GGWCC	2 cut(s)	937, 1156
BmeT110I	CYCGRG	1 cut(s)	1460
BmgBI	CACGTC	1 cut(s)	1201
BmgT120I	GGNCC	4 cut(s)	880, 937, 1156, 1296
BmiI	GGNNCC	6 cut(s)	86, 763, 889, 938, 1006, 1158
BmrFI	CCNGG	5 cut(s)	77, 576, 758, 934, 1286
BmsI	GCATC	4 cut(s)	336, 689, 711, 780
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
BpmI	CTGGAG	3 cut(s)	454, 520, 705
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	1600
BsaBI	GATNNNNATC	2 cut(s)	387, 449
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	9 cut(s)	493, 574, 756, 757, 883, 932, 933, 970, 1089
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	4 cut(s)	212, 392, 621, 722
Bse3DI	GCAATG	5 cut(s)	147, 281, 410, 691, 1469
Bse8I	GATNNNNATC	2 cut(s)	387, 449
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	5 cut(s)	77, 576, 758, 934, 1286
BseDI	CCNNGG	9 cut(s)	493, 574, 756, 757, 883, 932, 933, 970, 1089
BseGI	GGATG	4 cut(s)	12, 704, 752, 1054
BseJI	GATNNNNATC	2 cut(s)	387, 449
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	5 cut(s)	147, 281, 410, 691, 1469
BseMII	CTCAG	5 cut(s)	99, 1205, 1281, 1380, 1593
BseNI	ACTGG	4 cut(s)	212, 392, 621, 722
BseSI	GKGCMC	2 cut(s)	766, 1007
BseX3I	CGGCCG	1 cut(s)	1430
BseXI	GCAGC	2 cut(s)	619, 1461
BsgI	GTGCAG	2 cut(s)	1492, 1509
Bsh1236I	CGCG	2 cut(s)	885, 972
Bsh1285I	CGRYCG	1 cut(s)	1433
BshFI	GGCC	7 cut(s)	255, 881, 1064, 1246, 1298, 1367, 1432
BshNI	GGYRCC	2 cut(s)	761, 1004
BsiEI	CGRYCG	1 cut(s)	1433
BsiHKAI	GWGCWC	2 cut(s)	1034, 1461
BsiHKCI	CYCGRG	1 cut(s)	1460
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	3 cut(s)	380, 950, 1435
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	3 cut(s)	380, 950, 1435
BsnI	GGCC	7 cut(s)	255, 881, 1064, 1246, 1298, 1367, 1432
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	1460
Bsp1286I	GDGCHC	4 cut(s)	766, 1007, 1034, 1461
Bsp13I	TCCGGA	1 cut(s)	122
Bsp1407I	TGTACA	2 cut(s)	234, 690
Bsp143I	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
BspACI	CCGC	5 cut(s)	176, 883, 885, 970, 972
BspANI	GGCC	7 cut(s)	255, 881, 1064, 1246, 1298, 1367, 1432
BspCNI	CTCAG	5 cut(s)	100, 1204, 1282, 1381, 1594
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	885, 972
BspLI	GGNNCC	6 cut(s)	86, 763, 889, 938, 1006, 1158
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	4 cut(s)	53, 377, 586, 1334
BspQI	GCTCTTC	2 cut(s)	1022, 1260
BspT107I	GGYRCC	2 cut(s)	761, 1004
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	5 cut(s)	147, 281, 410, 691, 1469
BsrGI	TGTACA	2 cut(s)	234, 690
BsrI	ACTGG	4 cut(s)	212, 392, 621, 722
BssECI	CCNNGG	9 cut(s)	493, 574, 756, 757, 883, 932, 933, 970, 1089
BssMI	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
BssNAI	GTATAC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	767
BssT1I	CCWWGG	1 cut(s)	1089
Bst1107I	GTATAC	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	767
Bst2UI	CCWGG	5 cut(s)	77, 576, 758, 934, 1286
Bst4CI	ACNGT	4 cut(s)	992, 1019, 1129, 1307
Bst6I	CTCTTC	2 cut(s)	1022, 1260
BstAUI	TGTACA	2 cut(s)	234, 690
BstC8I	GCNNGC	6 cut(s)	288, 883, 970, 1248, 1409, 1467
BstDEI	CTNAG	6 cut(s)	108, 528, 1191, 1290, 1389, 1602
BstDSI	CCRYGG	2 cut(s)	883, 970
BstF5I	GGATG	4 cut(s)	12, 704, 752, 1054
BstFNI	CGCG	2 cut(s)	885, 972
BstKTI	GATC	9 cut(s)	30, 61, 304, 385, 521, 581, 627, 1330, 1342
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
BstMCI	CGRYCG	1 cut(s)	1433
BstMWI	GCNNNNNNNGC	7 cut(s)	252, 455, 969, 1247, 1295, 1471, 1480
BstNI	CCWGG	5 cut(s)	77, 576, 758, 934, 1286
BstNSI	RCATGY	3 cut(s)	241, 1108, 1411
BstSCI	CCNGG	5 cut(s)	75, 574, 756, 932, 1284
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	2 cut(s)	766, 1007
BstUI	CGCG	2 cut(s)	885, 972
BstV1I	GCAGC	2 cut(s)	619, 1461
BstX2I	RGATCY	2 cut(s)	27, 58
BstYI	RGATCY	2 cut(s)	27, 58
BstZ17I	GTATAC	1 cut(s)	217
BstZI	CGGCCG	1 cut(s)	1430
BsuRI	GGCC	7 cut(s)	255, 881, 1064, 1246, 1298, 1367, 1432
BtgI	CCRYGG	2 cut(s)	883, 970
BtgZI	GCGATG	1 cut(s)	794
BtrI	CACGTC	1 cut(s)	1201
BtsCI	GGATG	4 cut(s)	12, 704, 752, 1054
BtsI	GCAGTG	1 cut(s)	1257
BtsIMutI	CAGTG	6 cut(s)	614, 997, 1134, 1257, 1386, 1509
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	6 cut(s)	288, 883, 970, 1248, 1409, 1467
Cfr13I	GGNCC	4 cut(s)	880, 937, 1156, 1296
Cfr42I	CCGCGG	2 cut(s)	886, 973
CsiI	ACCWGGT	1 cut(s)	75
Csp6I	GTAC	6 cut(s)	235, 464, 691, 982, 996, 1204
CspCI	CAANNNNNGTGG	3 cut(s)	579, 614, 1600
CviAII	CATG	9 cut(s)	187, 238, 568, 877, 1096, 1105, 1408, 1412, 1438
CviQI	GTAC	6 cut(s)	235, 464, 691, 982, 996, 1204
DdeI	CTNAG	6 cut(s)	108, 528, 1191, 1290, 1389, 1602
DpnI	GATC	9 cut(s)	29, 60, 303, 384, 520, 580, 626, 1329, 1341
DpnII	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
DraIII	CACNNNGTG	1 cut(s)	1214
DrdI	GACNNNNNNGTC	1 cut(s)	1192
DseDI	GACNNNNNNGTC	1 cut(s)	1192
EaeI	YGGCCR	3 cut(s)	1062, 1365, 1430
EagI	CGGCCG	1 cut(s)	1430
Eam1104I	CTCTTC	2 cut(s)	1022, 1260
EarI	CTCTTC	2 cut(s)	1022, 1260
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	1459
EclXI	CGGCCG	1 cut(s)	1430
Eco130I	CCWWGG	1 cut(s)	1089
Eco24I	GRGCYC	1 cut(s)	1461
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	937, 1156
Eco52I	CGGCCG	1 cut(s)	1430
Eco53kI	GAGCTC	1 cut(s)	1459
Eco57I	CTGAAG	4 cut(s)	186, 932, 1292, 1463
Eco88I	CYCGRG	1 cut(s)	1460
EcoICRI	GAGCTC	1 cut(s)	1459
EcoRII	CCWGG	5 cut(s)	75, 574, 756, 932, 1284
EcoT14I	CCWWGG	1 cut(s)	1089
EcoT22I	ATGCAT	2 cut(s)	704, 1413
EcoT38I	GRGCYC	1 cut(s)	1461
ErhI	CCWWGG	1 cut(s)	1089
FaeI	CATG	9 cut(s)	190, 241, 571, 880, 1099, 1108, 1411, 1415, 1441
FaqI	GGGAC	3 cut(s)	380, 950, 1435
FatI	CATG	9 cut(s)	186, 237, 567, 876, 1095, 1104, 1407, 1411, 1437
FauI	CCCGC	3 cut(s)	890, 965, 977
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	4 cut(s)	144, 216, 434, 563
Fnu4HI	GCNGC	2 cut(s)	633, 1475
FokI	GGATG	4 cut(s)	19, 711, 739, 1061
FriOI	GRGCYC	1 cut(s)	1461
Fsp4HI	GCNGC	2 cut(s)	633, 1475
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	633, 1475
GsuI	CTGGAG	3 cut(s)	454, 520, 705
HaeIII	GGCC	7 cut(s)	255, 881, 1064, 1246, 1298, 1367, 1432
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	9 cut(s)	190, 241, 571, 880, 1099, 1108, 1411, 1415, 1441
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	7 cut(s)	208, 292, 362, 436, 533, 738, 749
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	3 cut(s)	573, 863, 1144
Hpy166II	GTNNAC	9 cut(s)	145, 217, 235, 435, 464, 564, 691, 1204, 1386
Hpy188I	TCNGA	7 cut(s)	497, 951, 1075, 1185, 1198, 1314, 1603
Hpy188III	TCNNGA	4 cut(s)	123, 511, 787, 1154
Hpy8I	GTNNAC	9 cut(s)	145, 217, 235, 435, 464, 564, 691, 1204, 1386
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	1 cut(s)	1487
HpyCH4III	ACNGT	4 cut(s)	992, 1019, 1129, 1307
HpyCH4IV	ACGT	3 cut(s)	1180, 1200, 1446
HpyF10VI	GCNNNNNNNGC	7 cut(s)	252, 455, 969, 1247, 1295, 1471, 1480
HpyF3I	CTNAG	6 cut(s)	108, 528, 1191, 1290, 1389, 1602
HpySE526I	ACGT	3 cut(s)	1180, 1200, 1446
Hsp92II	CATG	9 cut(s)	190, 241, 571, 880, 1099, 1108, 1411, 1415, 1441
Kpn2I	TCCGGA	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	1327
KspI	CCGCGG	2 cut(s)	886, 973
Kzo9I	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
LguI	GCTCTTC	2 cut(s)	1022, 1260
LmnI	GCTCC	4 cut(s)	90, 545, 713, 1456
Lsp1109I	GCAGC	2 cut(s)	619, 1461
LweI	GCATC	4 cut(s)	336, 689, 711, 780
MabI	ACCWGGT	1 cut(s)	75
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	1180, 1200, 1446
MaeIII	GTNAC	2 cut(s)	605, 896
MalI	GATC	9 cut(s)	29, 60, 303, 384, 520, 580, 626, 1329, 1341
MboI	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
MboII	GAAGA	7 cut(s)	179, 271, 340, 528, 1039, 1277, 1588
MflI	RGATCY	2 cut(s)	27, 58
MhlI	GDGCHC	4 cut(s)	766, 1007, 1034, 1461
MlsI	TGGCCA	1 cut(s)	1064
MluCI	AATT	3 cut(s)	373, 420, 1567
MluNI	TGGCCA	1 cut(s)	1064
MlyI	GAGTC	5 cut(s)	356, 430, 527, 732, 743
MmeI	TCCRAC	1 cut(s)	567
Mox20I	TGGCCA	1 cut(s)	1064
Mph1103I	ATGCAT	2 cut(s)	704, 1413
MroI	TCCGGA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	1382
MscI	TGGCCA	1 cut(s)	1064
MseI	TTAA	3 cut(s)	332, 774, 1608
MslI	CAYNNNNRTG	7 cut(s)	93, 185, 479, 1020, 1130, 1314, 1416
Msp20I	TGGCCA	1 cut(s)	1064
MspA1I	CMGCKG	2 cut(s)	885, 972
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	5 cut(s)	77, 576, 758, 934, 1286
MvaI	CCWGG	5 cut(s)	77, 576, 758, 934, 1286
MvnI	CGCG	2 cut(s)	885, 972
MwoI	GCNNNNNNNGC	7 cut(s)	252, 455, 969, 1247, 1295, 1471, 1480
NdeII	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
NlaIII	CATG	9 cut(s)	190, 241, 571, 880, 1099, 1108, 1411, 1415, 1441
NlaIV	GGNNCC	6 cut(s)	86, 763, 889, 938, 1006, 1158
NmuCI	GTSAC	1 cut(s)	896
NsiI	ATGCAT	2 cut(s)	704, 1413
NspI	RCATGY	3 cut(s)	241, 1108, 1411
OliI	CACNNNNGTG	1 cut(s)	1130
PaeI	GCATGC	1 cut(s)	1411
PaeR7I	CTCGAG	1 cut(s)	1460
PaqCI	CACCTGC	1 cut(s)	449
PasI	CCCWGGG	2 cut(s)	757, 933
PciI	ACATGT	2 cut(s)	237, 1104
PciSI	GCTCTTC	2 cut(s)	1022, 1260
PcsI	WCGNNNNNNNCGW	1 cut(s)	1177
PdmI	GAANNNNTTC	1 cut(s)	1382
PfeI	GAWTC	2 cut(s)	208, 292
PflFI	GACNNNGTC	3 cut(s)	182, 559, 1179
PkrI	GCNGC	2 cut(s)	634, 1476
PleI	GAGTC	5 cut(s)	356, 430, 527, 732, 743
PpsI	GAGTC	5 cut(s)	356, 430, 527, 732, 743
PscI	ACATGT	2 cut(s)	237, 1104
Psp124BI	GAGCTC	1 cut(s)	1461
Psp6I	CCWGG	5 cut(s)	75, 574, 756, 932, 1284
PspGI	CCWGG	5 cut(s)	75, 574, 756, 932, 1284
PspN4I	GGNNCC	6 cut(s)	86, 763, 889, 938, 1006, 1158
PspPI	GGNCC	4 cut(s)	880, 937, 1156, 1296
PspXI	VCTCGAGB	1 cut(s)	1460
PsuI	RGATCY	2 cut(s)	27, 58
PsyI	GACNNNGTC	3 cut(s)	182, 559, 1179
RsaI	GTAC	6 cut(s)	236, 465, 692, 983, 997, 1205
RsaNI	GTAC	6 cut(s)	235, 464, 691, 982, 996, 1204
RseI	CAYNNNNRTG	7 cut(s)	93, 185, 479, 1020, 1130, 1314, 1416
SacI	GAGCTC	1 cut(s)	1461
SacII	CCGCGG	2 cut(s)	886, 973
SalI	GTCGAC	1 cut(s)	433
SapI	GCTCTTC	2 cut(s)	1022, 1260
SaqAI	TTAA	3 cut(s)	332, 774, 1608
SatI	GCNGC	2 cut(s)	633, 1475
Sau3AI	GATC	9 cut(s)	27, 58, 301, 382, 518, 578, 624, 1327, 1339
Sau96I	GGNCC	4 cut(s)	880, 937, 1156, 1296
SchI	GAGTC	5 cut(s)	356, 430, 527, 732, 743
ScrFI	CCNGG	5 cut(s)	77, 576, 758, 934, 1286
SduI	GDGCHC	4 cut(s)	766, 1007, 1034, 1461
SexAI	ACCWGGT	1 cut(s)	75
SfaNI	GCATC	4 cut(s)	336, 689, 711, 780
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	1460
Sfr303I	CCGCGG	2 cut(s)	886, 973
SgrBI	CCGCGG	2 cut(s)	886, 973
SinI	GGWCC	2 cut(s)	937, 1156
SlaI	CTCGAG	1 cut(s)	1460
SmiMI	CAYNNNNRTG	7 cut(s)	93, 185, 479, 1020, 1130, 1314, 1416
SmlI	CTYRAG	2 cut(s)	1460, 1615
SmoI	CTYRAG	2 cut(s)	1460, 1615
SphI	GCATGC	1 cut(s)	1411
Sse9I	AATT	3 cut(s)	373, 420, 1567
SsiI	CCGC	5 cut(s)	176, 883, 885, 970, 972
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	1461
StyD4I	CCNGG	5 cut(s)	75, 574, 756, 932, 1284
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	4 cut(s)	992, 1019, 1129, 1307
TaiI	ACGT	3 cut(s)	1183, 1203, 1449
TaqI	TCGA	5 cut(s)	381, 434, 521, 786, 1461
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	373, 420, 1567
TatI	WGTACW	4 cut(s)	234, 463, 690, 1203
TfiI	GAWTC	2 cut(s)	208, 292
Tru1I	TTAA	3 cut(s)	332, 774, 1608
Tru9I	TTAA	3 cut(s)	332, 774, 1608
TscAI	CASTG	6 cut(s)	621, 997, 1134, 1257, 1393, 1516
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	2 cut(s)	632, 1474
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	5 cut(s)	23, 649, 1112, 1454, 1539
TspGWI	ACGGA	3 cut(s)	794, 794, 884
TspRI	CASTG	6 cut(s)	621, 997, 1134, 1257, 1393, 1516
Tth111I	GACNNNGTC	3 cut(s)	182, 559, 1179
VpaK11BI	GGWCC	2 cut(s)	937, 1156
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	3 cut(s)	241, 1108, 1411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	930
XhoI	CTCGAG	1 cut(s)	1460
XmiI	GTMKAC	4 cut(s)	144, 216, 434, 563
XmnI	GAANNNNTTC	1 cut(s)	1382
XspI	CTAG	1 cut(s)	140
Zsp2I	ATGCAT	2 cut(s)	704, 1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.