pycom17g06180

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
4350149 .. 4350748
600 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06180.1

Sequence Viewer

Length: 600 bp
ATGAACAACCCCAACAGCAAACACACTAATAAAACTCTCGCTCCTCTTCTCCTTCCCCTTTTTTGCCACCTGATAACCATACACATGGCCGGGGACTCGCTGCAAATCTACGATCCGCCTGAACAAATCACCCTTCGATGTGGCTCTTCCGGTACCGAATACGGCCTACACTCCCAATATTGGGATGGAGATAGTGACACATCTTTTTTTCCATTCGGAGCAGCTGGTAACAAATCCATATCCAAAGAAGCACTTTTCCCCAATTATTCCGGCCAAGCGCCTTACAGCACAGCAAGGCTTTCCCGCTTTGAATTTACCTACACATTTCCACTCTCTTCCGGCCCAAAGTTCATCCGCTTGTATTTCTACCCAGCTTCATACGCCCCCAACTTCAACCAATCCCAAGCCCTCTTCTCAGTCAAAGCCGGTGGCTTTACCCTTCTCCACGACTTCAACGCTTCAGCCACGACTGATGCTTCTGGCCCGTATACTATATACAGAGAGTTCTGCCTCCACACTGAGTCAGGACACAATTTGAATATCACGTTCACTCCAAGCAAAGCAAGCCCAGATGCCTTACGCGTTTATCAATGGGATTGA

Protein Analysis

200

Amino Acids

22.15

Weight (kDa)

6.36

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 488
AccII CGCG 1 cut(s) 582
AciI CCGC 3 cut(s) 116, 304, 355
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 2 cut(s) 87, 271
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 180, 181
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 4 cut(s) 311, 394, 454, 538
AluBI AGCT 2 cut(s) 224, 374
AluI AGCT 2 cut(s) 224, 374
AlwI GGATC 1 cut(s) 107
AoxI GGCC 5 cut(s) 87, 163, 271, 340, 481
ApeKI GCWGC 2 cut(s) 100, 221
ApoI RAATTY 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 341, 482
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 87, 233
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 178
BcnI CCSGG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 2 cut(s) 101, 222
BlsI GCNGC 2 cut(s) 102, 223
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 341, 482
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 463, 562
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 535, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 181
Bse118I RCCGGY 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 190, 351
BseLI CCNNNNNNNGG 2 cut(s) 180, 181
BseMII CTCAG 2 cut(s) 429, 510
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 87, 233
BseYI CCCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 5 cut(s) 89, 165, 273, 342, 483
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 5 cut(s) 90, 150, 270, 339, 426
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 180, 181
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 5 cut(s) 89, 165, 273, 342, 483
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 3 cut(s) 116, 304, 355
BspANI GGCC 5 cut(s) 89, 165, 273, 342, 483
BspCNI CTCAG 2 cut(s) 428, 511
BspFNI CGCG 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 112
BssNAI GTATAC 1 cut(s) 489
Bst1107I GTATAC 1 cut(s) 489
Bst6I CTCTTC 4 cut(s) 51, 151, 340, 416
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 2 cut(s) 415, 519
BstF5I GGATG 2 cut(s) 190, 351
BstFNI CGCG 1 cut(s) 582
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 380, 564
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 87, 233
BstXI CCANNNNNNTGG 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 489
BsuRI GGCC 5 cut(s) 89, 165, 273, 342, 483
BtsCI GGATG 2 cut(s) 190, 351
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 565
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 341, 482
Csp6I GTAC 1 cut(s) 153
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 1 cut(s) 85
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 415, 519
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 87, 271
Eam1104I CTCTTC 4 cut(s) 51, 151, 340, 416
EarI CTCTTC 4 cut(s) 51, 151, 340, 416
EciI GGCGGA 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 444
FaeI CATG 1 cut(s) 88
FaiI YATR 7 cut(s) 80, 86, 239, 379, 489, 494, 496
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 2 cut(s) 101, 222
FokI GGATG 2 cut(s) 197, 338
Fsp4HI GCNGC 2 cut(s) 101, 222
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 101, 222
GsaI CCCAGC 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 5 cut(s) 89, 165, 273, 342, 483
HapII CCGG 5 cut(s) 90, 150, 270, 339, 426
HhaI GCGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 2 cut(s) 95, 521
HpaII CCGG 5 cut(s) 90, 150, 270, 339, 426
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 489, 549
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 525
Hpy8I GTNNAC 2 cut(s) 489, 549
HpyAV CCTTC 3 cut(s) 62, 143, 449
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 564
HpyF3I CTNAG 2 cut(s) 415, 519
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 278
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 46, 218
Lsp1109I GCAGC 2 cut(s) 87, 233
LweI GCATC 2 cut(s) 463, 562
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 194, 227
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 4 cut(s) 38, 138, 327, 403
MluCI AATT 3 cut(s) 262, 311, 532
MluI ACGCGT 1 cut(s) 580
MlyI GAGTC 2 cut(s) 89, 530
MnlI CCTC 3 cut(s) 54, 419, 521
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 5 cut(s) 90, 150, 270, 339, 426
MspR9I CCNGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 380, 564
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 102, 223
PleI GAGTC 2 cut(s) 89, 529
PpsI GAGTC 2 cut(s) 89, 529
PspFI CCCAGC 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 341, 482
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 151
SatI GCNGC 2 cut(s) 101, 222
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 2 cut(s) 341, 482
SchI GAGTC 2 cut(s) 89, 530
ScrFI CCNGG 1 cut(s) 91
SetI ASST 5 cut(s) 72, 226, 320, 376, 548
SfaNI GCATC 2 cut(s) 463, 562
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 3 cut(s) 262, 311, 532
SsiI CCGC 3 cut(s) 116, 304, 355
SspI AATATT 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 89
TaiI ACGT 1 cut(s) 548
TaqI TCGA 1 cut(s) 136
TasI AATT 3 cut(s) 262, 311, 532
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 100, 221
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 17, 340, 366
TspRI CASTG 1 cut(s) 523
XapI RAATTY 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.