Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

80409591 .. 80412037

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTAGCATGGATGATAATTGGATGAAACGGCCGTCAATGGATAATGTTGTGAGAGGGATTCAATTTGCATTGGAAATACAACAGAACAACGAGAATTATATTGATCACACTGAAAGGACGGTTCAAGATGAGATTGCATTGATCAAGGACAATGAAGGGTCTAGTTGTAGTGAGCGAAGCAGTGGGGCAAATGAATCCATCCGAAGGTTGACCAGGACAATCTTCTCCAAGATCATCGATCCGAAAGACATTTCCCAATTGCAAGGACTAAAAAACGCAATTGAAAGGAGAGCAGTACTACTTGTCAAAGTCTATCCGCAGCTTCGTTCTCTTTTCCTCTCCACCCCATCATCATGCAAAGATTATCTCCAGCTGCAAAAGCTTAATCTCTACCTTTTCTTGTTTCAGCACATGGACACGCTGATCGTGGCCAGAGAGTTGCCCCCTATTTCACGCTCTTGTGCAAGGCTAGCATTGATTCAGACAGAAGAGCTGAAGCAAAAGAGCCTGGCTGAGTGGGCCAAGAGTTGTCATCAGAATGGGGAACTTGATCAAATCATTGATGCACGTTTGAGAGGTAAGATTGCAGTCGAGTGCCTGAATAAGTTCGTTGAGATAGCTATCAGTTGCATGCATAACAATGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.81

Weight (kDa)

7.61

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	2 cut(s)	32, 432
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	65, 128, 287
AjnI	CCWGG	2 cut(s)	215, 510
AluBI	AGCT	5 cut(s)	325, 376, 385, 496, 623
AluI	AGCT	5 cut(s)	325, 376, 385, 496, 623
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	3 cut(s)	32, 432, 522
ApeKI	GCWGC	2 cut(s)	322, 376
Asp700I	GAANNNNTTC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	522
AsuNHI	GCTAGC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	334, 363
BccI	CCATC	2 cut(s)	209, 358
BceAI	ACGGC	2 cut(s)	19, 47
BciT130I	CCWGG	2 cut(s)	217, 512
BclI	TGATCA	3 cut(s)	106, 144, 553
BfaI	CTAG	2 cut(s)	165, 473
BisI	GCNGC	2 cut(s)	323, 377
BlsI	GCNGC	2 cut(s)	324, 378
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	217, 512
BmgT120I	GGNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	217, 512
BmsI	GCATC	1 cut(s)	556
BmtI	GCTAGC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	356
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	217, 512
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	3 cut(s)	19, 30, 201
BseJI	GATNNNNATC	1 cut(s)	623
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	507
BseX3I	CGGCCG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	334, 363
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	3 cut(s)	34, 434, 524
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	207
BsnI	GGCC	3 cut(s)	34, 434, 524
Bsp143I	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	3 cut(s)	34, 434, 524
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	240
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	486
BssMI	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
Bst2UI	CCWGG	2 cut(s)	217, 512
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	474, 635
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	19, 30, 201
BstKTI	GATC	6 cut(s)	109, 147, 237, 244, 429, 556
BstMBI	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	382, 473, 521
BstNI	CCWGG	2 cut(s)	217, 512
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	215, 510
BstV1I	GCAGC	2 cut(s)	334, 363
BstZI	CGGCCG	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	34, 434, 524
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	19, 30, 201
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	111, 190
Cac8I	GCNNGC	2 cut(s)	474, 635
Cfr13I	GGNCC	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	4 cut(s)	10, 357, 415, 634
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	6 cut(s)	108, 146, 236, 243, 428, 555
DpnII	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
EaeI	YGGCCR	2 cut(s)	32, 432
EagI	CGGCCG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EclXI	CGGCCG	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	215, 510
EcoT22I	ATGCAT	1 cut(s)	639
FaeI	CATG	4 cut(s)	13, 360, 418, 637
FaiI	YATR	7 cut(s)	11, 102, 358, 416, 635, 639, 652
FatI	CATG	4 cut(s)	9, 356, 414, 633
FbaI	TGATCA	3 cut(s)	106, 144, 553
Fnu4HI	GCNGC	2 cut(s)	323, 377
FokI	GGATG	3 cut(s)	26, 37, 188
Fsp4HI	GCNGC	2 cut(s)	323, 377
FspBI	CTAG	2 cut(s)	165, 473
GluI	GCNGC	2 cut(s)	323, 377
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	34, 434, 524
Hin1II	CATG	4 cut(s)	13, 360, 418, 637
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	61, 197, 481
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	4 cut(s)	206, 246, 486, 540
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	152, 201
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	382, 473, 521
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	13, 360, 418, 637
Ksp22I	TGATCA	3 cut(s)	106, 144, 553
Kzo9I	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
LguI	GCTCTTC	1 cut(s)	486
LpnPI	CCDG	7 cut(s)	202, 229, 386, 448, 497, 524, 614
Lsp1109I	GCAGC	2 cut(s)	334, 363
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	2 cut(s)	165, 473
MaeII	ACGT	1 cut(s)	571
MalI	GATC	6 cut(s)	108, 146, 236, 243, 428, 555
MboI	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
MboII	GAAGA	2 cut(s)	217, 503
MfeI	CAATTG	2 cut(s)	260, 282
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	5 cut(s)	19, 65, 97, 260, 282
MluNI	TGGCCA	1 cut(s)	434
MnlI	CCTC	3 cut(s)	50, 350, 572
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	639
MroXI	GAANNNNTTC	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	3 cut(s)	355, 540, 642
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	217, 512
MunI	CAATTG	2 cut(s)	260, 282
MvaI	CCWGG	2 cut(s)	217, 512
MwoI	GCNNNNNNNGC	3 cut(s)	382, 473, 521
NdeII	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	4 cut(s)	13, 360, 418, 637
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	1 cut(s)	637
PaeI	GCATGC	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	3 cut(s)	61, 197, 481
PkrI	GCNGC	2 cut(s)	324, 378
Psp6I	CCWGG	2 cut(s)	215, 510
PspGI	CCWGG	2 cut(s)	215, 510
PspPI	GGNCC	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	3 cut(s)	355, 540, 642
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	323, 377
Sau3AI	GATC	6 cut(s)	106, 144, 234, 241, 426, 553
Sau96I	GGNCC	1 cut(s)	522
ScaI	AGTACT	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	217, 512
SetI	ASST	9 cut(s)	212, 327, 378, 387, 399, 498, 574, 583, 625
SfaNI	GCATC	1 cut(s)	556
SmiMI	CAYNNNNRTG	3 cut(s)	355, 540, 642
SphI	GCATGC	1 cut(s)	637
Sse9I	AATT	5 cut(s)	19, 65, 97, 260, 282
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	2 cut(s)	165, 473
StyD4I	CCNGG	2 cut(s)	215, 510
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	2 cut(s)	240, 594
TasI	AATT	5 cut(s)	19, 65, 97, 260, 282
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	3 cut(s)	61, 197, 481
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	118, 190
TseI	GCWGC	2 cut(s)	322, 376
TspDTI	ATGAA	3 cut(s)	41, 171, 210
TspRI	CASTG	2 cut(s)	118, 190
XceI	RCATGY	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	165, 473
ZrmI	AGTACT	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.