Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326071.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 708

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgccgatacttggaacccggaagaaaggttatgttaatctctttgttgcactacaagcaaaccaagaggattacgaatctcgatttaatgatgcgatcttgaatgggctcgaaatcttcaaactcaatgacacagacgacaatctcagcggacccatccccgagctaacgatggatatcccgcaaaaggtgatgtcggaaagctctagaaattcgactccaatgcttgctatcctcgccggtgtagtttcagccttacttgttctttcctttgtcgggtttttagttttcaggcgtggaagaaaagtcagggattccaactccagccacaggatgacgacgccaaccatgacccttcggtcaccttttccatcttatttgtgccgtgacttttcacttgcagagatcaaagcggccaccaaaaactttgatgacactttaatcgttggagtcggtgggtttggccatgtctacaaaggatacttcggcaatggggccatccttgtggcaatcaaacggctaaaagccacttcatcgctaggcgcccatgagttcatgacagaaatcaaaatgctctcccgattgcaccacaactatttggtttctcttataggattttgtgctgataaaggtgagatgatcttagtctacgattacatggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

221

Amino Acids

24.53

Weight (kDa)

8.81

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	542
AccI	GTMKAC	2 cut(s)	471, 648
AciI	CCGC	3 cut(s)	150, 182, 413
AcoI	YGGCCR	2 cut(s)	414, 463
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	2 cut(s)	341, 543
AfiI	CCNNNNNNNGG	4 cut(s)	11, 187, 276, 330
AgsI	TTSAA	2 cut(s)	103, 121
AluBI	AGCT	2 cut(s)	166, 204
AluI	AGCT	2 cut(s)	166, 204
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	414, 463, 495
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	152, 495
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	202, 354, 644
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	111
BccI	CCATC	4 cut(s)	164, 166, 379, 506
BceAI	ACGGC	2 cut(s)	369, 533
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciVI	GTATCC	1 cut(s)	473
BcnI	CCSGG	1 cut(s)	19
BfaI	CTAG	2 cut(s)	207, 539
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	473
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	152, 495
BmiI	GGNNCC	4 cut(s)	16, 154, 496, 544
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	341, 543
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 187, 276, 330
Bse118I	RCCGGY	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	176
BseGI	GGATG	3 cut(s)	156, 339, 498
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	4 cut(s)	11, 187, 276, 330
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	416, 465, 497
BshNI	GGYRCC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	19, 240
BslI	CCNNNNNNNGG	4 cut(s)	11, 187, 276, 330
BsnI	GGCC	3 cut(s)	416, 465, 497
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	96, 405, 639
BspACI	CCGC	3 cut(s)	150, 182, 413
BspANI	GGCC	3 cut(s)	416, 465, 497
BspCNI	CTCAG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	16, 154, 496, 544
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	3 cut(s)	96, 405, 639
BssNI	GRCGYC	2 cut(s)	341, 543
BstACI	GRCGYC	2 cut(s)	341, 543
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	146, 643
BstEII	GGTNACC	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	156, 339, 498
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	99, 408, 642
BstMBI	GATC	3 cut(s)	96, 405, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 236
BstPI	GGTNACC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	473
BsuRI	GGCC	3 cut(s)	416, 465, 497
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	156, 339, 498
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	152, 495
CseI	GACGC	1 cut(s)	349
CviAII	CATG	5 cut(s)	349, 467, 548, 556, 658
DdeI	CTNAG	2 cut(s)	146, 643
DinI	GGCGCC	1 cut(s)	544
DpnI	GATC	3 cut(s)	98, 407, 641
DpnII	GATC	3 cut(s)	96, 405, 639
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	2 cut(s)	414, 463
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	360
EcoO65I	GGTNACC	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	544
EheI	GGCGCC	1 cut(s)	544
FaeI	CATG	5 cut(s)	352, 470, 551, 559, 661
FaiI	YATR	8 cut(s)	33, 350, 468, 549, 557, 611, 659, 664
FatI	CATG	5 cut(s)	348, 466, 547, 555, 657
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	2 cut(s)	471, 648
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	3 cut(s)	143, 346, 485
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	207, 539
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	307
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	416, 465, 497
HapII	CCGG	2 cut(s)	19, 240
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	2 cut(s)	341, 543
Hin1II	CATG	5 cut(s)	352, 470, 551, 559, 661
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	4 cut(s)	77, 217, 314, 450
HpaII	CCGG	2 cut(s)	19, 240
HphI	GGTGA	3 cut(s)	202, 354, 644
Hpy166II	GTNNAC	2 cut(s)	472, 649
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	5 cut(s)	81, 100, 207, 556, 579
Hpy8I	GTNNAC	2 cut(s)	472, 649
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	50, 401, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 236
HpyF3I	CTNAG	2 cut(s)	146, 643
Hsp92I	GRCGYC	2 cut(s)	341, 543
Hsp92II	CATG	5 cut(s)	352, 470, 551, 559, 661
HspAI	GCGC	1 cut(s)	543
KasI	GGCGCC	1 cut(s)	542
Kzo9I	GATC	3 cut(s)	96, 405, 639
LpnPI	CCDG	6 cut(s)	32, 253, 277, 295, 316, 337
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	207, 539
MaeIII	GTNAC	2 cut(s)	360, 386
MalI	GATC	3 cut(s)	98, 407, 641
MboI	GATC	3 cut(s)	96, 405, 639
MboII	GAAGA	3 cut(s)	34, 109, 312
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	465
Mly113I	GGCGCC	1 cut(s)	543
MlyI	GAGTC	2 cut(s)	211, 459
MmeI	TCCRAC	3 cut(s)	177, 342, 427
MnlI	CCTC	2 cut(s)	61, 245
Mox20I	TGGCCA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	3 cut(s)	36, 87, 440
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	2 cut(s)	19, 240
MspR9I	CCNGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	56, 236
NarI	GGCGCC	1 cut(s)	543
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	96, 405, 639
NlaIII	CATG	5 cut(s)	352, 470, 551, 559, 661
NlaIV	GGNNCC	4 cut(s)	16, 154, 496, 544
NmuCI	GTSAC	2 cut(s)	360, 386
PagI	TCATGA	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	77, 314
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	211, 458
PluTI	GGCGCC	1 cut(s)	546
PpsI	GAGTC	2 cut(s)	211, 458
PspEI	GGTNACC	1 cut(s)	360
PspN4I	GGNNCC	4 cut(s)	16, 154, 496, 544
PspPI	GGNCC	2 cut(s)	152, 495
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	3 cut(s)	36, 87, 440
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	96, 405, 639
Sau96I	GGNCC	2 cut(s)	152, 495
SchI	GAGTC	2 cut(s)	211, 459
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	31, 168, 192, 206, 367, 634
SfaNI	GCATC	1 cut(s)	82
SfoI	GGCGCC	1 cut(s)	544
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	3 cut(s)	150, 182, 413
SspDI	GGCGCC	1 cut(s)	542
SspMI	CTAG	2 cut(s)	207, 539
StyD4I	CCNGG	1 cut(s)	17
TaqI	TCGA	3 cut(s)	82, 111, 215
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	1 cut(s)	211
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	77, 314
Tru1I	TTAA	3 cut(s)	36, 87, 440
Tru9I	TTAA	3 cut(s)	36, 87, 440
TseFI	GTSAC	2 cut(s)	360, 386
Tsp45I	GTSAC	2 cut(s)	360, 386
TspDTI	ATGAA	2 cut(s)	522, 544
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	471, 648
XspI	CTAG	2 cut(s)	207, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.