Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

17942426 .. 17953043

Gene Structure 10618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGAAACCAATCATCAGTCCTCTCTACCTCTACTTGTTTCCCCACATCCTCACTCTCTTCGTCACCGGTCAGTCGCCACCATACACCCCGGTCGACCTTATCAACATTGCCTGTGGCAATTCCGGCCAACTAACCTCCAACAGCCTCAGAAAGTGGTCTGGAGATGTCGACTCAAAATTCACCCCAACTGGTAACGCATCCGAATCCATAAATGCACCGCGGTCGGACACAGCCAGCCAAGTCCCTTACACCAAGGCTCGGCTGTCTCGCTCCAACTTCACTTACACAATTCCCCTCTCTCCAGGCCAAAAATTCATCCGCTTGCATTTCAATCCAGAAACATACACCCCGCACTTCCAACGCCCCAACTCCCTCTTCGCCGTCACCGCCGGAGGCTTCATTCTTCTCAAAGACTTCAACGCCTCAGTCACCGCCGACGCCTCCGGCGGGTCCCCGCTGGTCAGAGAATTCTGTGTAAACATCGAGACAGGACGGAGACTCGAGATCACCTTCACACCAAGCAGAGATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCCACCGGTCTTTACAATACTTCGTCAGCTAAAATGGTGGACGCCAACACAGGCTCATTTGCGATCGGAAACAAAACAGGTCTGGAGATGGTGTACCGACTCAACGTCGGCGGAGTCCCCATGTCACCGAACGCAGACACAGGCATGTACCGGACTTGGGAAAATGCCGACGAACTTTATTTGGATGATAGAAGTGCAAAACTCAGCGTGCTACTACAAAACAATACAATCGAGCTCAACTTCGTCAAAGTTCCAGAATACTCTGCTCCAAAACCAGTTTACACAACAGGTCGGTCAACGGGGGTGACCGAAGCCACCGACGAGAGCTATGGCCTCACATGGGCATTTCCCTTAGATCCCAAGTTTTATTACCTGGTGAGACTCCATTTCTGTGAGATTCGAAACAGAGAGCGATGGTTTCAAATCTACTTGGCCAATCAAACCGCAGATGTCATCCGATGGGGTGGAGGAAATGGGAATCCAGTTTACAAAGACTACGTTGTGGGCATGTTCATGCCTCCGGTCGGAAGGCGGAAGGAAGTTAACTTATTTCTCGTACTTTCACCGCTCCCGATTGGGTATGCTGACAGCAATGCCATGTTGAACGGGCTGGAAATCTTCAAGCTCAGTGACTCGAGTGGGAATTTCGCCGGACCCAACCCCAATCCACCACCAGTGCGGTCCCCGTCACAAAAACTATATGATACTGAAAATAACAAGTCGAGTCCCATGGTTGCTATCGTTGCCGGTGTAGTTGCCGGCTTCATTACGCTCTCTGTTCTCATATTCTTGGTTTCGAGGCGACGATGGAAATTAAAGGACTCGGGGTCTGGCTCCAGGCAAACAATGAACCCGGGGCAATTTATGCCTACTAATTTGTGTCGTCACTTTCCGCTGGAAGAGATCACAGCCGCCACCAAAAACTTCAATGATACATTCATTATTGGAGCTGGAGGATTTGGCAACGTATACAGAGGATGCACTGATGGTGGAGCCACTCCAGTTGCCATCAAACGACTGAAACCAGGGTCATCGCAGGGTGCTCACGAGTTTAAGACCGAAATTGAGATGCTCTCCCTGTTAGGAAATCAATCATTGTATGATTACATGGCACACGGAACCCTCCGTGACCATCTCTACCATACCGACAACCCGCCTCTTCCCTGGGAGAAGCGACTTCAGATTTGCATAGGCACAGCTCGAGGGTTGCAATACCTTCATAGTGGTGTAAAGGGCATCATCATTCACCGAGATATGAAGAGCACAAACATATTATTGGATGACAAATGGGTGGCCAAAGTTTCAGATTTTGGGCTGTCTAAGGGCACGACTAACGTGTCCAAAACCCACATCAGCACAATGGTGAAAGGCAATTTTGGGTATCTGGACCCGGAATACTACAGCCGACAACGTCTGCCAGCAGTGATTCAGACAGAAGAGCTGAAGCAAGTGAGCCTGGCTGAGTGGGCCAAGATCTGTCATCAGAATGGGGACCTTGATCAAATCATTGATCCAAGTTTGAGAGGTAAGATTTCAGCCGACTGCCTGAATAAGTTCACTGAGGTAGCTATCAGTTGCATGCATGATGATGGGACAGAACAGCCGTCCATGAATGATGTTGTAAAGGAGCTTGAGCTTGCATTGCTGCTTCAGCAGAGTGCAGAAGGGAATACCAAATGCACTGATAGGAATGTTGAAACTGAAACAAGCAGTAGTGACCACAGTTGTGCCACCAACGATTCCGTCAAATGTATATCCGCGGCAATCTTCTCTGAGATTAACAACCCAAGTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

788

Amino Acids

86.95

Weight (kDa)

7.21

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	37 - 397	5.1e-26	Malectin-like domain
Pkinase	PF00069	503 - 658	3.3e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	504 - 733	1.1e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1903
AccBSI	CCGCTC	1 cut(s)	1135
AccI	GTMKAC	3 cut(s)	93, 168, 1536
AccII	CGCG	2 cut(s)	220, 2327
AclWI	GGATC	2 cut(s)	917, 2072
AcoI	YGGCCR	3 cut(s)	124, 999, 1860
AcsI	RAATTY	4 cut(s)	176, 311, 467, 1210
AcuI	CTGAAG	3 cut(s)	1730, 2030, 2201
AcyI	GRCGYC	2 cut(s)	438, 609
AfaI	GTAC	4 cut(s)	533, 662, 716, 1125
AfiI	CCNNNNNNNGG	5 cut(s)	258, 447, 724, 907, 1091
AflIII	ACRYGT	1 cut(s)	1902
AgeI	ACCGGT	2 cut(s)	65, 572
AgsI	TTSAA	7 cut(s)	331, 418, 989, 1171, 1189, 1495, 2264
AhdI	GACNNNNNGTC	2 cut(s)	671, 1393
AjnI	CCWGG	6 cut(s)	301, 939, 1403, 1591, 1730, 2022
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AleI	CACNNNNGTG	2 cut(s)	1928, 2292
Alw21I	GWGCWC	3 cut(s)	804, 1612, 1832
Alw26I	GTCTC	4 cut(s)	270, 479, 490, 940
AlwI	GGATC	2 cut(s)	917, 2072
Ama87I	CYCGRG	5 cut(s)	500, 1201, 1390, 1420, 1767
AoxI	GGCC	6 cut(s)	124, 304, 898, 999, 1860, 2034
ApeKI	GCWGC	1 cut(s)	2212
ApoI	RAATTY	4 cut(s)	176, 311, 467, 1210
ArsI	GACNNNNNNTTYG	2 cut(s)	1734, 1766
AsiGI	ACCGGT	2 cut(s)	65, 572
Asp700I	GAANNNNTTC	1 cut(s)	2120
AspS9I	GGNCC	6 cut(s)	450, 1220, 1248, 1954, 2034, 2059
AsuC2I	CCSGG	4 cut(s)	89, 1421, 1422, 1958
AsuII	TTCGAA	1 cut(s)	967
AvaI	CYCGRG	5 cut(s)	500, 1201, 1390, 1420, 1767
AvaII	GGWCC	5 cut(s)	450, 1220, 1248, 1954, 2059
BaeGI	GKGCMC	1 cut(s)	1895
BalI	TGGCCA	2 cut(s)	1001, 1862
BanII	GRGCYC	1 cut(s)	804
BauI	CACGAG	1 cut(s)	1613
Bbv12I	GWGCWC	3 cut(s)	804, 1612, 1832
BbvI	GCAGC	1 cut(s)	2199
BccI	CCATC	8 cut(s)	649, 975, 1020, 1368, 1547, 1583, 1707, 2150
BceAI	ACGGC	2 cut(s)	365, 2155
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	6 cut(s)	303, 941, 1405, 1593, 1732, 2024
BclI	TGATCA	1 cut(s)	2065
BcnI	CCSGG	4 cut(s)	89, 1421, 1422, 1958
BcoDI	GTCTC	4 cut(s)	270, 479, 490, 940
BfmI	CTRYAG	1 cut(s)	1966
BglII	AGATCT	1 cut(s)	2040
BisI	GCNGC	3 cut(s)	1479, 2213, 2328
BlsI	GCNGC	3 cut(s)	1480, 2214, 2329
Bme18I	GGWCC	5 cut(s)	450, 1220, 1248, 1954, 2059
BmeRI	GACNNNNNGTC	2 cut(s)	671, 1393
BmeT110I	CYCGRG	5 cut(s)	500, 1201, 1390, 1420, 1767
BmgT120I	GGNCC	6 cut(s)	450, 1220, 1248, 1954, 2034, 2059
BmiI	GGNNCC	9 cut(s)	451, 452, 1222, 1250, 1402, 1561, 1687, 1956, 2060
BmsI	GCATC	5 cut(s)	206, 517, 1535, 1626, 1812
BplI	GAGNNNNNCTC	2 cut(s)	1625, 1657
BpmI	CTGGAG	6 cut(s)	180, 285, 671, 1387, 1539, 1551
Bpu14I	TTCGAA	1 cut(s)	967
BpuEI	CTTGAG	1 cut(s)	2219
BpuMI	CCSGG	4 cut(s)	89, 1421, 1422, 1958
BsaHI	GRCGYC	2 cut(s)	438, 609
BsaWI	WCCGGW	4 cut(s)	65, 572, 717, 1087
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	258, 447, 724, 907, 1091
Bse118I	RCCGGY	4 cut(s)	65, 572, 1313, 1325
Bse1I	ACTGG	5 cut(s)	193, 842, 1049, 1241, 1568
Bse3DI	GCAATG	3 cut(s)	105, 1165, 2207
BseBI	CCWGG	6 cut(s)	303, 941, 1405, 1593, 1732, 2024
BseGI	GGATG	7 cut(s)	45, 197, 315, 757, 1020, 1550, 1852
BseLI	CCNNNNNNNGG	5 cut(s)	258, 447, 724, 907, 1091
BseMI	GCAATG	3 cut(s)	105, 1165, 2207
BseMII	CTCAG	7 cut(s)	160, 438, 784, 1207, 2019, 2118, 2331
BseNI	ACTGG	5 cut(s)	193, 842, 1049, 1241, 1568
BseSI	GKGCMC	1 cut(s)	1895
BseXI	GCAGC	1 cut(s)	2199
BsgI	GTGCAG	1 cut(s)	2247
Bsh1236I	CGCG	2 cut(s)	220, 2327
Bsh1285I	CGRYCG	4 cut(s)	93, 224, 633, 1092
BshFI	GGCC	6 cut(s)	126, 306, 900, 1001, 1862, 2036
BshTI	ACCGGT	2 cut(s)	65, 572
BsiEI	CGRYCG	4 cut(s)	93, 224, 633, 1092
BsiHKAI	GWGCWC	3 cut(s)	804, 1612, 1832
BsiHKCI	CYCGRG	5 cut(s)	500, 1201, 1390, 1420, 1767
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	7 cut(s)	227, 436, 668, 1234, 1278, 2072, 2173
BslI	CCNNNNNNNGG	5 cut(s)	258, 447, 724, 907, 1091
BsmAI	GTCTC	4 cut(s)	270, 479, 490, 940
BsmFI	GGGAC	7 cut(s)	227, 436, 668, 1234, 1278, 2072, 2173
BsnI	GGCC	6 cut(s)	126, 306, 900, 1001, 1862, 2036
BsoBI	CYCGRG	5 cut(s)	500, 1201, 1390, 1420, 1767
Bsp119I	TTCGAA	1 cut(s)	967
Bsp1286I	GDGCHC	4 cut(s)	804, 1612, 1832, 1895
Bsp143I	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
Bsp19I	CCATGG	1 cut(s)	1296
BspANI	GGCC	6 cut(s)	126, 306, 900, 1001, 1862, 2036
BspCNI	CTCAG	7 cut(s)	159, 437, 783, 1206, 2020, 2119, 2332
BspFNI	CGCG	2 cut(s)	220, 2327
BspLI	GGNNCC	9 cut(s)	451, 452, 1222, 1250, 1402, 1561, 1687, 1956, 2060
BspPI	GGATC	2 cut(s)	917, 2072
BspQI	GCTCTTC	2 cut(s)	1820, 1998
BspT104I	TTCGAA	1 cut(s)	967
BsrBI	CCGCTC	1 cut(s)	1135
BsrDI	GCAATG	3 cut(s)	105, 1165, 2207
BsrFI	RCCGGY	4 cut(s)	65, 572, 1313, 1325
BsrI	ACTGG	5 cut(s)	193, 842, 1049, 1241, 1568
BssAI	RCCGGY	4 cut(s)	65, 572, 1313, 1325
BssMI	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
BssNAI	GTATAC	1 cut(s)	1537
BssNI	GRCGYC	2 cut(s)	438, 609
BssSI	CACGAG	1 cut(s)	1613
BssT1I	CCWWGG	2 cut(s)	252, 1296
Bst1107I	GTATAC	1 cut(s)	1537
Bst2BI	CACGAG	1 cut(s)	1613
Bst2UI	CCWGG	6 cut(s)	303, 941, 1405, 1593, 1732, 2024
Bst4CI	ACNGT	1 cut(s)	2291
Bst6I	CTCTTC	6 cut(s)	62, 380, 1461, 1731, 1820, 1998
BstACI	GRCGYC	2 cut(s)	438, 609
BstAPI	GCANNNNNTGC	1 cut(s)	1432
BstBI	TTCGAA	1 cut(s)	967
BstC8I	GCNNGC	7 cut(s)	235, 323, 776, 1327, 1986, 2147, 2205
BstDEI	CTNAG	9 cut(s)	146, 424, 770, 919, 1193, 1887, 2028, 2127, 2340
BstDSI	CCRYGG	3 cut(s)	218, 1296, 2325
BstEII	GGTNACC	1 cut(s)	871
BstF5I	GGATG	7 cut(s)	45, 197, 315, 757, 1020, 1550, 1852
BstFNI	CGCG	2 cut(s)	220, 2327
BstKTI	GATC	7 cut(s)	507, 633, 925, 1473, 2043, 2068, 2080
BstMAI	GTCTC	4 cut(s)	270, 479, 490, 940
BstMBI	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
BstMCI	CGRYCG	4 cut(s)	93, 224, 633, 1092
BstMWI	GCNNNNNNNGC	7 cut(s)	123, 386, 1310, 1432, 2033, 2209, 2218
BstNI	CCWGG	6 cut(s)	303, 941, 1405, 1593, 1732, 2024
BstNSI	RCATGY	3 cut(s)	715, 1078, 2149
BstPI	GGTNACC	1 cut(s)	871
BstSFI	CTRYAG	1 cut(s)	1966
BstSLI	GKGCMC	1 cut(s)	1895
BstUI	CGCG	2 cut(s)	220, 2327
BstV1I	GCAGC	1 cut(s)	2199
BstX2I	RGATCY	2 cut(s)	922, 2040
BstYI	RGATCY	2 cut(s)	922, 2040
BstZ17I	GTATAC	1 cut(s)	1537
BsuRI	GGCC	6 cut(s)	126, 306, 900, 1001, 1862, 2036
BtgI	CCRYGG	3 cut(s)	218, 1296, 2325
BtgZI	GCGATG	2 cut(s)	994, 1584
BtsCI	GGATG	7 cut(s)	45, 197, 315, 757, 1020, 1550, 1852
BtsI	GCAGTG	1 cut(s)	1995
BtsIMutI	CAGTG	6 cut(s)	1201, 1248, 1548, 1995, 2124, 2247
Cac8I	GCNNGC	7 cut(s)	235, 323, 776, 1327, 1986, 2147, 2205
Cfr10I	RCCGGY	4 cut(s)	65, 572, 1313, 1325
Cfr13I	GGNCC	6 cut(s)	450, 1220, 1248, 1954, 2034, 2059
Cfr42I	CCGCGG	2 cut(s)	221, 2328
Cfr9I	CCCGGG	1 cut(s)	1420
CseI	GACGC	2 cut(s)	446, 617
CsiI	ACCWGGT	1 cut(s)	939
Csp6I	GTAC	4 cut(s)	532, 661, 715, 1124
CspAI	ACCGGT	2 cut(s)	65, 572
CspCI	CAANNNNNGTGG	3 cut(s)	1552, 1587, 2338
CviQI	GTAC	4 cut(s)	532, 661, 715, 1124
DdeI	CTNAG	9 cut(s)	146, 424, 770, 919, 1193, 1887, 2028, 2127, 2340
DpnI	GATC	7 cut(s)	506, 632, 924, 1472, 2042, 2067, 2079
DpnII	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
DrdI	GACNNNNNNGTC	1 cut(s)	1903
DriI	GACNNNNNGTC	2 cut(s)	671, 1393
DseDI	GACNNNNNNGTC	1 cut(s)	1903
EaeI	YGGCCR	3 cut(s)	124, 999, 1860
Eam1104I	CTCTTC	6 cut(s)	62, 380, 1461, 1731, 1820, 1998
Eam1105I	GACNNNNNGTC	2 cut(s)	671, 1393
EarI	CTCTTC	6 cut(s)	62, 380, 1461, 1731, 1820, 1998
EciI	GGCGGA	2 cut(s)	693, 1114
Ecl136II	GAGCTC	1 cut(s)	802
Eco130I	CCWWGG	2 cut(s)	252, 1296
Eco24I	GRGCYC	1 cut(s)	804
Eco47I	GGWCC	5 cut(s)	450, 1220, 1248, 1954, 2059
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	3 cut(s)	1730, 2030, 2201
Eco88I	CYCGRG	5 cut(s)	500, 1201, 1390, 1420, 1767
Eco91I	GGTNACC	1 cut(s)	871
EcoICRI	GAGCTC	1 cut(s)	802
EcoO109I	RGGNCCY	2 cut(s)	450, 2059
EcoO65I	GGTNACC	1 cut(s)	871
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	6 cut(s)	301, 939, 1403, 1591, 1730, 2022
EcoT14I	CCWWGG	2 cut(s)	252, 1296
EcoT22I	ATGCAT	1 cut(s)	2151
EcoT38I	GRGCYC	1 cut(s)	804
ErhI	CCWWGG	2 cut(s)	252, 1296
FaqI	GGGAC	7 cut(s)	227, 436, 668, 1234, 1278, 2072, 2173
FauI	CCCGC	4 cut(s)	357, 440, 462, 1728
FbaI	TGATCA	1 cut(s)	2065
FblI	GTMKAC	3 cut(s)	93, 168, 1536
Fnu4HI	GCNGC	3 cut(s)	1479, 2213, 2328
FokI	GGATG	7 cut(s)	32, 184, 302, 764, 1007, 1557, 1859
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	3 cut(s)	1479, 2213, 2328
GluI	GCNGC	3 cut(s)	1479, 2213, 2328
GsuI	CTGGAG	6 cut(s)	180, 285, 671, 1387, 1539, 1551
HaeIII	GGCC	6 cut(s)	126, 306, 900, 1001, 1862, 2036
HgaI	GACGC	2 cut(s)	446, 617
Hin1I	GRCGYC	2 cut(s)	438, 609
HincII	GTYRAC	4 cut(s)	94, 169, 864, 1111
HindII	GTYRAC	4 cut(s)	94, 169, 864, 1111
HpaI	GTTAAC	1 cut(s)	1111
Hpy188III	TCNNGA	9 cut(s)	159, 335, 484, 502, 650, 821, 1138, 1613, 1952
Hpy99I	CGWCG	5 cut(s)	440, 677, 740, 890, 1374
HpyAV	CCTTC	5 cut(s)	520, 1089, 1096, 1793, 2225
HpyCH4III	ACNGT	1 cut(s)	2291
HpyCH4IV	ACGT	5 cut(s)	672, 1065, 1533, 1902, 1978
HpyF10VI	GCNNNNNNNGC	7 cut(s)	123, 386, 1310, 1432, 2033, 2209, 2218
HpyF3I	CTNAG	9 cut(s)	146, 424, 770, 919, 1193, 1887, 2028, 2127, 2340
HpySE526I	ACGT	5 cut(s)	672, 1065, 1533, 1902, 1978
Hsp92I	GRCGYC	2 cut(s)	438, 609
KflI	GGGWCCC	1 cut(s)	450
KroI	GCCGGC	1 cut(s)	1325
KroNI	GCCGGC	1 cut(s)	1327
Ksp22I	TGATCA	1 cut(s)	2065
KspAI	GTTAAC	1 cut(s)	1111
KspI	CCGCGG	2 cut(s)	221, 2328
Kzo9I	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
LguI	GCTCTTC	2 cut(s)	1820, 1998
LmnI	GCTCC	7 cut(s)	275, 838, 1140, 1406, 1514, 1559, 2194
Lsp1109I	GCAGC	1 cut(s)	2199
LweI	GCATC	5 cut(s)	206, 517, 1535, 1626, 1812
MabI	ACCWGGT	1 cut(s)	939
MaeII	ACGT	5 cut(s)	672, 1065, 1533, 1902, 1978
MalI	GATC	7 cut(s)	506, 632, 924, 1472, 2042, 2067, 2079
MbiI	CCGCTC	1 cut(s)	1135
MboI	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
MboII	GAAGA	9 cut(s)	49, 367, 395, 1177, 1478, 1718, 1837, 2015, 2326
MflI	RGATCY	2 cut(s)	922, 2040
MhlI	GDGCHC	4 cut(s)	804, 1612, 1832, 1895
MlsI	TGGCCA	2 cut(s)	1001, 1862
MluNI	TGGCCA	2 cut(s)	1001, 1862
MlyI	GAGTC	8 cut(s)	164, 492, 660, 690, 942, 1193, 1300, 1382
MmeI	TCCRAC	5 cut(s)	162, 204, 297, 382, 1072
Mox20I	TGGCCA	2 cut(s)	1001, 1862
Mph1103I	ATGCAT	1 cut(s)	2151
MroNI	GCCGGC	1 cut(s)	1325
MroXI	GAANNNNTTC	1 cut(s)	2120
MscI	TGGCCA	2 cut(s)	1001, 1862
MseI	TTAA	4 cut(s)	1110, 1382, 1620, 2346
MslI	CAYNNNNRTG	8 cut(s)	710, 957, 1079, 1791, 1928, 2052, 2154, 2292
Msp20I	TGGCCA	2 cut(s)	1001, 1862
MspA1I	CMGCKG	4 cut(s)	220, 457, 1462, 2327
MvaI	CCWGG	6 cut(s)	303, 941, 1405, 1593, 1732, 2024
MvnI	CGCG	2 cut(s)	220, 2327
MwoI	GCNNNNNNNGC	7 cut(s)	123, 386, 1310, 1432, 2033, 2209, 2218
NaeI	GCCGGC	1 cut(s)	1327
NciI	CCSGG	4 cut(s)	89, 1421, 1422, 1958
NcoI	CCATGG	1 cut(s)	1296
NdeII	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
NgoMIV	GCCGGC	1 cut(s)	1325
NlaIV	GGNNCC	9 cut(s)	451, 452, 1222, 1250, 1402, 1561, 1687, 1956, 2060
NmeAIII	GCCGAG	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	2151
NspI	RCATGY	3 cut(s)	715, 1078, 2149
NspV	TTCGAA	1 cut(s)	967
OliI	CACNNNNGTG	2 cut(s)	1928, 2292
PaeI	GCATGC	1 cut(s)	2149
PaeR7I	CTCGAG	3 cut(s)	500, 1201, 1767
PasI	CCCWGGG	1 cut(s)	1731
PciSI	GCTCTTC	2 cut(s)	1820, 1998
PdiI	GCCGGC	1 cut(s)	1327
PdmI	GAANNNNTTC	1 cut(s)	2120
PfeI	GAWTC	6 cut(s)	203, 549, 964, 1045, 1993, 2306
Pfl23II	CGTACG	1 cut(s)	531
PflFI	GACNNNGTC	1 cut(s)	1977
PinAI	ACCGGT	2 cut(s)	65, 572
PkrI	GCNGC	3 cut(s)	1480, 2214, 2329
Ple19I	CGATCG	1 cut(s)	633
PleI	GAGTC	8 cut(s)	164, 492, 660, 689, 942, 1193, 1299, 1382
PpsI	GAGTC	8 cut(s)	164, 492, 660, 689, 942, 1193, 1299, 1382
PpuMI	RGGWCCY	2 cut(s)	450, 2059
Psp124BI	GAGCTC	1 cut(s)	804
Psp5II	RGGWCCY	2 cut(s)	450, 2059
Psp6I	CCWGG	6 cut(s)	301, 939, 1403, 1591, 1730, 2022
PspEI	GGTNACC	1 cut(s)	871
PspGI	CCWGG	6 cut(s)	301, 939, 1403, 1591, 1730, 2022
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	9 cut(s)	451, 452, 1222, 1250, 1402, 1561, 1687, 1956, 2060
PspPI	GGNCC	6 cut(s)	450, 1220, 1248, 1954, 2034, 2059
PspPPI	RGGWCCY	2 cut(s)	450, 2059
PspXI	VCTCGAGB	2 cut(s)	1201, 1767
PsuI	RGATCY	2 cut(s)	922, 2040
PsyI	GACNNNGTC	1 cut(s)	1977
PvuI	CGATCG	1 cut(s)	633
RsaI	GTAC	4 cut(s)	533, 662, 716, 1125
RsaNI	GTAC	4 cut(s)	532, 661, 715, 1124
RseI	CAYNNNNRTG	8 cut(s)	710, 957, 1079, 1791, 1928, 2052, 2154, 2292
SacI	GAGCTC	1 cut(s)	804
SacII	CCGCGG	2 cut(s)	221, 2328
SalI	GTCGAC	2 cut(s)	92, 167
SapI	GCTCTTC	2 cut(s)	1820, 1998
SaqAI	TTAA	4 cut(s)	1110, 1382, 1620, 2346
SatI	GCNGC	3 cut(s)	1479, 2213, 2328
Sau3AI	GATC	7 cut(s)	504, 630, 922, 1470, 2040, 2065, 2077
Sau96I	GGNCC	6 cut(s)	450, 1220, 1248, 1954, 2034, 2059
SchI	GAGTC	8 cut(s)	164, 492, 660, 690, 942, 1193, 1300, 1382
SduI	GDGCHC	4 cut(s)	804, 1612, 1832, 1895
SexAI	ACCWGGT	1 cut(s)	939
SfaNI	GCATC	5 cut(s)	206, 517, 1535, 1626, 1812
SfcI	CTRYAG	1 cut(s)	1966
Sfr274I	CTCGAG	3 cut(s)	500, 1201, 1767
Sfr303I	CCGCGG	2 cut(s)	221, 2328
SfuI	TTCGAA	1 cut(s)	967
SgrBI	CCGCGG	2 cut(s)	221, 2328
SinI	GGWCC	5 cut(s)	450, 1220, 1248, 1954, 2059
SlaI	CTCGAG	3 cut(s)	500, 1201, 1767
SmaI	CCCGGG	1 cut(s)	1422
SmiMI	CAYNNNNRTG	8 cut(s)	710, 957, 1079, 1791, 1928, 2052, 2154, 2292
SmlI	CTYRAG	4 cut(s)	500, 1201, 1767, 2198
SmoI	CTYRAG	4 cut(s)	500, 1201, 1767, 2198
SphI	GCATGC	1 cut(s)	2149
SstI	GAGCTC	1 cut(s)	804
StyI	CCWWGG	2 cut(s)	252, 1296
TaaI	ACNGT	1 cut(s)	2291
TaiI	ACGT	5 cut(s)	675, 1068, 1536, 1905, 1981
TaqII	GACCGA	3 cut(s)	849, 890, 1640
TauI	GCSGC	2 cut(s)	1481, 2330
TfiI	GAWTC	6 cut(s)	203, 549, 964, 1045, 1993, 2306
Tru1I	TTAA	4 cut(s)	1110, 1382, 1620, 2346
Tru9I	TTAA	4 cut(s)	1110, 1382, 1620, 2346
TscAI	CASTG	6 cut(s)	1201, 1248, 1555, 1995, 2131, 2254
TseI	GCWGC	1 cut(s)	2212
TspGWI	ACGGA	5 cut(s)	508, 561, 1682, 1698, 2299
TspMI	CCCGGG	1 cut(s)	1420
TspRI	CASTG	6 cut(s)	1201, 1248, 1555, 1995, 2131, 2254
Tth111I	GACNNNGTC	1 cut(s)	1977
VpaK11BI	GGWCC	5 cut(s)	450, 1220, 1248, 1954, 2059
XapI	RAATTY	4 cut(s)	176, 311, 467, 1210
XceI	RCATGY	3 cut(s)	715, 1078, 2149
XhoI	CTCGAG	3 cut(s)	500, 1201, 1767
XmaI	CCCGGG	1 cut(s)	1420
XmiI	GTMKAC	3 cut(s)	93, 168, 1536
XmnI	GAANNNNTTC	1 cut(s)	2120
Zsp2I	ATGCAT	1 cut(s)	2151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.