MD17G1062400.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
5072098 .. 5072721
624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1062400.v1.1.491

Sequence Viewer

Length: 603 bp
ATGATCCTTACCTTGCTCGTGGCCCAAGACGACTTGCCGCCTGTATACACTCCAGTCGACTTTATCACTGTTGCATGCGGCTATACGGGCCCCCTAATGCAAGATAAGCAATATTGGACTGGAGATATGTACTCGATATACTCCCCCTTAGAAGAACACCAAGCTGCTAGCAAATCCACTGTCAGAGAAGCCCCTCCATCGTCCACCTCCTCCTTCATCAAAGTACCTTATACCTGGGCACGGCTTTCTCACTCTGAATTTACTTACAGATTTTCCTTCAAAACTGCCGGCCAAAAGTTCGTCCGGTTGTATTTCCGCTCGGTTTCTTATGGCCCTAGCTTCGAACGCTCCAAAGCACTATTCTCTGTCAAAGCCGGTGGCTTTACCCTTCTCCACGACTTCAATGCTTCAGTCACAGATGCTAATGGGGTTGACACTTTGTACAGAGAGTTCTGTTTGAACGTTGAAGACACAAAGAGCCTGAACATCACATTTGCTCCAAGCATGGCAGCAAGTCCAGATGCGTATGCCTTTATCAACGGAATTGAAATTGTATCCATGCCGAGCAATCTTTTACTACACTCCTGCCCCAAGCTCCAATAG

Protein Analysis

201

Amino Acids

22.31

Weight (kDa)

6.06

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AccI GTMKAC 2 cut(s) 45, 57
AciI CCGC 3 cut(s) 38, 78, 316
AclI AACGTT 1 cut(s) 462
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 131, 225, 443
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 5 cut(s) 280, 403, 460, 467, 548
AjnI CCWGG 1 cut(s) 233
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 164, 339, 595
AluI AGCT 3 cut(s) 164, 339, 595
AoxI GGCC 4 cut(s) 21, 88, 289, 331
ApaI GGGCCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 164, 509
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AspS9I GGNCC 4 cut(s) 22, 88, 89, 332
AsuII TTCGAA 1 cut(s) 342
AsuNHI GCTAGC 1 cut(s) 167
BaeGI GKGCMC 2 cut(s) 92, 241
BanII GRGCYC 1 cut(s) 92
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 151, 521
BccI CCATC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 1 cut(s) 235
BciVI GTATCC 1 cut(s) 565
BfaI CTAG 2 cut(s) 168, 336
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 4 cut(s) 38, 79, 165, 510
BlsI GCNGC 4 cut(s) 39, 80, 166, 511
Bme1390I CCNGG 1 cut(s) 235
BmgT120I GGNCC 4 cut(s) 22, 88, 89, 332
BmiI GGNNCC 2 cut(s) 90, 91
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 409, 511
BmtI GCTAGC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 36, 141
Bpu14I TTCGAA 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 2 cut(s) 287, 374
Bse1I ACTGG 2 cut(s) 53, 124
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 53, 124
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 2 cut(s) 92, 241
BseXI GCAGC 2 cut(s) 151, 521
BshFI GGCC 4 cut(s) 23, 90, 291, 333
BsiSI CCGG 3 cut(s) 288, 304, 375
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 4 cut(s) 23, 90, 291, 333
Bsp119I TTCGAA 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 92, 241
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 3 cut(s) 38, 78, 316
BspANI GGCC 4 cut(s) 23, 90, 291, 333
BspLI GGNNCC 2 cut(s) 90, 91
BspOI GCTAGC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 318
BsrFI RCCGGY 2 cut(s) 287, 374
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 2 cut(s) 53, 124
BssAI RCCGGY 2 cut(s) 287, 374
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 3
BssNAI GTATAC 1 cut(s) 46
BssSI CACGAG 1 cut(s) 17
Bst1107I GTATAC 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 70, 181
BstAUI TGTACA 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 3 cut(s) 76, 169, 289
BstDEI CTNAG 1 cut(s) 148
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 87, 106, 345
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 233
BstSLI GKGCMC 2 cut(s) 92, 241
BstV1I GCAGC 2 cut(s) 151, 521
BstV2I GAAGAC 1 cut(s) 474
BstZ17I GTATAC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 4 cut(s) 23, 90, 291, 333
BtsIMutI CAGTG 2 cut(s) 66, 177
Cac8I GCNNGC 3 cut(s) 76, 169, 289
Cfr10I RCCGGY 2 cut(s) 287, 374
Cfr13I GGNCC 4 cut(s) 22, 88, 89, 332
Csp6I GTAC 3 cut(s) 130, 224, 442
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 3 cut(s) 75, 505, 559
CviQI GTAC 3 cut(s) 130, 224, 442
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 3 cut(s) 78, 508, 562
FatI CATG 3 cut(s) 74, 504, 558
FblI GTMKAC 2 cut(s) 45, 57
Fnu4HI GCNGC 4 cut(s) 38, 79, 165, 510
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 38, 79, 165, 510
FspBI CTAG 2 cut(s) 168, 336
GluI GCNGC 4 cut(s) 38, 79, 165, 510
GsuI CTGGAG 2 cut(s) 36, 141
HaeIII GGCC 4 cut(s) 23, 90, 291, 333
HapII CCGG 3 cut(s) 288, 304, 375
Hin1II CATG 3 cut(s) 78, 508, 562
HincII GTYRAC 2 cut(s) 58, 433
HindII GTYRAC 2 cut(s) 58, 433
HpaII CCGG 3 cut(s) 288, 304, 375
Hpy166II GTNNAC 4 cut(s) 46, 58, 204, 433
Hpy188I TCNGA 2 cut(s) 185, 256
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 4 cut(s) 46, 58, 204, 433
HpyAV CCTTC 3 cut(s) 223, 286, 398
HpyCH4III ACNGT 2 cut(s) 70, 181
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 2 cut(s) 74, 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 106, 345
HpyF3I CTNAG 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 3 cut(s) 78, 508, 562
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 353, 502, 600
Lsp1109I GCAGC 2 cut(s) 151, 521
LweI GCATC 2 cut(s) 409, 511
MaeI CTAG 2 cut(s) 168, 336
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 318
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 164, 479
MhlI GDGCHC 2 cut(s) 92, 241
MluCI AATT 3 cut(s) 257, 543, 549
MnlI CCTC 3 cut(s) 204, 217, 220
MroNI GCCGGC 1 cut(s) 287
MspI CCGG 3 cut(s) 288, 304, 375
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 87, 106, 345
NaeI GCCGGC 1 cut(s) 289
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 287
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 3 cut(s) 78, 508, 562
NlaIV GGNNCC 2 cut(s) 90, 91
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 342
PaeI GCATGC 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 289
PkrI GCNGC 4 cut(s) 39, 80, 166, 511
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 90, 91
PspOMI GGGCCC 1 cut(s) 88
PspPI GGNCC 4 cut(s) 22, 88, 89, 332
PsrI GAACNNNNNNTAC 2 cut(s) 434, 466
RsaI GTAC 3 cut(s) 131, 225, 443
RsaNI GTAC 3 cut(s) 130, 224, 442
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 4 cut(s) 38, 79, 165, 510
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 4 cut(s) 22, 88, 89, 332
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 2 cut(s) 92, 241
SetI ASST 8 cut(s) 14, 166, 209, 229, 236, 341, 465, 597
SfaNI GCATC 2 cut(s) 409, 511
SfuI TTCGAA 1 cut(s) 342
SphI GCATGC 1 cut(s) 78
Sse9I AATT 3 cut(s) 257, 543, 549
SsiI CCGC 3 cut(s) 38, 78, 316
SspI AATATT 1 cut(s) 113
SspMI CTAG 2 cut(s) 168, 336
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 70, 181
TaiI ACGT 1 cut(s) 465
TaqI TCGA 3 cut(s) 57, 134, 342
TasI AATT 3 cut(s) 257, 543, 549
TatI WGTACW 2 cut(s) 129, 441
TauI GCSGC 2 cut(s) 40, 81
TscAI CASTG 2 cut(s) 73, 184
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 164, 509
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 2 cut(s) 73, 184
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 78
XmiI GTMKAC 2 cut(s) 45, 57
XspI CTAG 2 cut(s) 168, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.