RchiOBHm_Chr3g0481821

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
27894906 .. 27895742
837 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44673

Sequence Viewer

Length: 837 bp
ATGCTCTCTCAACTTCGTCATCGCCATTTGGTGTCTCTGATTGGATGTTGTAATGACAAGGGTGAGATAATCTTGGTCTATGACAACATGGCACTTGGAAGCCTCAGTGACCATCTATACAACACCAATAACCCACCTCTTCTCTGGAAACAGCGGCTTCAGATTTGTATTGGTGCAGCACGAGGTTTACAGTACCTTCACACTGGTGCCAAAGGCACCATCATTCACCGAGATGTGAAGAGCACAAACATCTTATTGGATGACAAATGGGTGGCCAAGGTTTCAGATTTTGGGTTGTCGAAAATGGGCAAGGCCAACATGTCGAAGAACCACATTAGCACGATTGTGAAGGGGAGTTTTGGGTATCTAGACCCAGAATACTACCGTACACAACGGCTGTCCGTGAAGTCAGATGTTTACTCATTTGGTGTAGTGTTGTGTGAGATACTGTGTGCAAGGCCAGCTGTGATACATACAGAGGAAATGAGCCAAATCAACCTGGCTGAGTGGACCACAAGCTGTTATGAGAATGGAGAACTTGATCAAATCATTGATCCAAATTTGAGAGGTAAGATTGCAGCAGAGTGCTTGAATAAGTTTGCTGAGATAGCTATTAGTTGCATCAATGATAATGGGAATGAACGGCCGTCAATGACTGACGTTGTGAGGGAGCTGGAGGTAGCATTGCAGCTTCATCAGAGAGGAGAGGAGGATATCAACAGTACTGGAAGGAATGGTGAATCTGAAACTAGTAGGGAGCATTTTCTGACCAAAGATTCCATTAAATGTATATCTGCGACCATCTTTTCTGAGATCAACAATCCAAGTGGGAGATGA

Protein Analysis

278

Amino Acids

31.09

Weight (kDa)

6.15

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 225 1.5e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 1 - 223 1.5e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 215
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 2 cut(s) 273, 644
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 3 cut(s) 194, 388, 724
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 592
AhlI ACTAGT 1 cut(s) 749
AjnI CCWGG 1 cut(s) 498
AleI CACNNNNGTG 2 cut(s) 204, 344
AluBI AGCT 5 cut(s) 464, 519, 611, 673, 691
AluI AGCT 5 cut(s) 464, 519, 611, 673, 691
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 548
AoxI GGCC 4 cut(s) 273, 312, 458, 644
ApeKI GCWGC 3 cut(s) 176, 578, 688
ApoI RAATTY 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 510
AsuHPI GGTGA 3 cut(s) 74, 218, 749
AvaII GGWCC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 275
BanI GGYRCC 2 cut(s) 206, 215
BauI CACGAG 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 188, 590, 700
BccI CCATC 3 cut(s) 120, 227, 809
BceAI ACGGC 3 cut(s) 410, 631, 659
BciT130I CCWGG 1 cut(s) 500
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 2 cut(s) 368, 750
BisI GCNGC 4 cut(s) 155, 177, 579, 689
BlsI GCNGC 4 cut(s) 156, 178, 580, 690
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 208, 217
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 276
Bse1I ACTGG 2 cut(s) 208, 730
Bse3DI GCAATG 1 cut(s) 683
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 50, 265
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 4 cut(s) 118, 495, 594, 801
BseNI ACTGG 2 cut(s) 208, 730
BseRI GAGGAG 2 cut(s) 717, 722
BseX3I CGGCCG 1 cut(s) 644
BseXI GCAGC 3 cut(s) 188, 590, 700
BsgI GTGCAG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 647
BshFI GGCC 4 cut(s) 275, 314, 460, 646
BshNI GGYRCC 2 cut(s) 206, 215
BsiEI CGRYCG 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 4 cut(s) 275, 314, 460, 646
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 541, 553, 813
BspACI CCGC 1 cut(s) 154
BspANI GGCC 4 cut(s) 275, 314, 460, 646
BspCNI CTCAG 4 cut(s) 117, 496, 595, 802
BspLI GGNNCC 2 cut(s) 208, 217
BspPI GGATC 1 cut(s) 548
BspQI GCTCTTC 1 cut(s) 233
BspT107I GGYRCC 2 cut(s) 206, 215
BsrDI GCAATG 1 cut(s) 683
BsrI ACTGG 2 cut(s) 208, 730
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 3 cut(s) 541, 553, 813
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 4 cut(s) 192, 386, 450, 722
Bst6I CTCTTC 2 cut(s) 144, 233
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 4 cut(s) 104, 504, 603, 810
BstF5I GGATG 2 cut(s) 50, 265
BstKTI GATC 3 cut(s) 544, 556, 816
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 541, 553, 813
BstMCI CGRYCG 1 cut(s) 647
BstMWI GCNNNNNNNGC 2 cut(s) 461, 608
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 188, 590, 700
BstZI CGGCCG 1 cut(s) 644
BsuRI GGCC 4 cut(s) 275, 314, 460, 646
BtgZI GCGATG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 50, 265
BtsIMutI CAGTG 2 cut(s) 112, 201
Cac8I GCNNGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 510
Csp6I GTAC 3 cut(s) 193, 387, 723
CspCI CAANNNNNGTGG 1 cut(s) 808
CviAII CATG 2 cut(s) 88, 319
CviQI GTAC 3 cut(s) 193, 387, 723
DdeI CTNAG 4 cut(s) 104, 504, 603, 810
DpnI GATC 3 cut(s) 543, 555, 815
DpnII GATC 3 cut(s) 541, 553, 813
EaeI YGGCCR 2 cut(s) 273, 644
EagI CGGCCG 1 cut(s) 644
Eam1104I CTCTTC 2 cut(s) 144, 233
EarI CTCTTC 2 cut(s) 144, 233
EclXI CGGCCG 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 510
Eco52I CGGCCG 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 498
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 91, 322
FaiI YATR 7 cut(s) 81, 89, 118, 320, 474, 525, 791
FatI CATG 2 cut(s) 87, 318
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 155, 177, 579, 689
FokI GGATG 2 cut(s) 57, 272
Fsp4HI GCNGC 4 cut(s) 155, 177, 579, 689
FspBI CTAG 2 cut(s) 368, 750
GluI GCNGC 4 cut(s) 155, 177, 579, 689
GsuI CTGGAG 1 cut(s) 695
HaeIII GGCC 4 cut(s) 275, 314, 460, 646
Hin1II CATG 2 cut(s) 91, 322
HinfI GANTC 2 cut(s) 740, 776
HphI GGTGA 3 cut(s) 74, 218, 749
Hpy166II GTNNAC 4 cut(s) 188, 389, 418, 510
Hpy188I TCNGA 8 cut(s) 39, 162, 286, 412, 699, 745, 768, 811
Hpy188III TCNNGA 2 cut(s) 145, 368
Hpy8I GTNNAC 4 cut(s) 188, 389, 418, 510
HpyAV CCTTC 3 cut(s) 206, 343, 723
HpyCH4III ACNGT 4 cut(s) 192, 386, 450, 722
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 5 cut(s) 176, 455, 578, 621, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 608
HpyF3I CTNAG 4 cut(s) 104, 504, 603, 810
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 2 cut(s) 91, 322
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 3 cut(s) 541, 553, 813
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 670, 757
LpnPI CCDG 8 cut(s) 130, 189, 387, 474, 485, 512, 659, 711
Lsp1109I GCAGC 3 cut(s) 188, 590, 700
LweI GCATC 1 cut(s) 630
MaeI CTAG 2 cut(s) 368, 750
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 543, 555, 815
MboI GATC 3 cut(s) 541, 553, 813
MboII GAAGA 3 cut(s) 131, 250, 337
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 1 cut(s) 559
MluNI TGGCCA 1 cut(s) 275
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 783
MslI CAYNNNNRTG 3 cut(s) 204, 231, 344
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 2 cut(s) 154, 464
MspR9I CCNGG 1 cut(s) 500
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 461, 608
NdeII GATC 3 cut(s) 541, 553, 813
NlaIII CATG 2 cut(s) 91, 322
NlaIV GGNNCC 2 cut(s) 208, 217
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 322
OliI CACNNNNGTG 2 cut(s) 204, 344
PciI ACATGT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 740, 776
PkrI GCNGC 4 cut(s) 156, 178, 580, 690
PscI ACATGT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 208, 217
PspPI GGNCC 1 cut(s) 510
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 3 cut(s) 194, 388, 724
RsaNI GTAC 3 cut(s) 193, 387, 723
RseI CAYNNNNRTG 3 cut(s) 204, 231, 344
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 4 cut(s) 155, 177, 579, 689
Sau3AI GATC 3 cut(s) 541, 553, 813
Sau96I GGNCC 1 cut(s) 510
ScaI AGTACT 1 cut(s) 724
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 1 cut(s) 630
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 3 cut(s) 204, 231, 344
SpeI ACTAGT 1 cut(s) 749
Sse9I AATT 1 cut(s) 559
SsiI CCGC 1 cut(s) 154
SspMI CTAG 2 cut(s) 368, 750
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 4 cut(s) 192, 386, 450, 722
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 299, 323
TasI AATT 1 cut(s) 559
TatI WGTACW 1 cut(s) 722
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 740, 776
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 2 cut(s) 112, 208
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 3 cut(s) 176, 578, 688
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 654, 683
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 2 cut(s) 112, 208
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XspI CTAG 2 cut(s) 368, 750
ZrmI AGTACT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.