Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

64498917 .. 64500532

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0514000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAGGCTGATGACGAAAAGCGTGAGCTTGTCTTCAAGGAAGATGGACAGGAGTATGCCCAAGTGCTTCGGATGCTGGGTAATGGTCGGTGCGAAGCCATGTGCATTGATACAACCAAGCGACTTTGCCATATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGGGATATCATTCTTGTTGGGCTTCGTGACTATCAGGATGACAAGGCCGATGTGATTCTCAAGTACATGCCGGACGAGGCTAGGCTGCTGAAGGCTTATGGAGAGCTTCCAGAGAATACACGTCTTAACGAGGGTATTACTGGGGGTCTTGATGAGGAGGAGGAAGGTGGTGCTGATGACTACATCGAGTTTGAAGATGAAGATATTGATAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.51

Weight (kDa)

5.02

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-1a	PF01176	32 - 93	3e-23	Translation initiation factor 1A / IF-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	85, 413
AjiI	CACGTC	1 cut(s)	341
AluBI	AGCT	3 cut(s)	76, 218, 325
AluI	AGCT	3 cut(s)	76, 218, 325
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	215, 304
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	227, 291
BccI	CCATC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	216, 305
BlsI	GCNGC	2 cut(s)	217, 306
BmgBI	CACGTC	1 cut(s)	341
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	111, 183
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	126, 262
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	389, 392
BseXI	GCAGC	2 cut(s)	227, 291
BseYI	CCCAGC	2 cut(s)	124, 218
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	126, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	227, 291
BstV2I	GAAGAC	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	126, 262
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	148, 286
CviQI	GTAC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	226
FaeI	CATG	2 cut(s)	151, 289
FaiI	YATR	5 cut(s)	105, 149, 180, 287, 318
FatI	CATG	2 cut(s)	147, 285
Fnu4HI	GCNGC	2 cut(s)	216, 305
FokI	GGATG	2 cut(s)	133, 269
Fsp4HI	GCNGC	2 cut(s)	216, 305
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	216, 305
GsaI	CCCAGC	2 cut(s)	128, 222
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	2 cut(s)	151, 289
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	4 cut(s)	245, 254, 329, 368
HpyAV	CCTTC	3 cut(s)	196, 304, 377
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	153, 196, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	151, 289
LpnPI	CCDG	8 cut(s)	19, 83, 110, 204, 239, 303, 342, 345
Lsp1109I	GCAGC	2 cut(s)	227, 291
LweI	GCATC	2 cut(s)	111, 183
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	6 cut(s)	19, 49, 73, 101, 425, 431
MnlI	CCTC	8 cut(s)	17, 35, 46, 289, 343, 367, 370, 373
MseI	TTAA	2 cut(s)	345, 436
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	151, 289
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	217, 306
PspFI	CCCAGC	2 cut(s)	124, 218
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	345, 436
SatI	GCNGC	2 cut(s)	216, 305
SetI	ASST	6 cut(s)	78, 207, 220, 327, 343, 388
SfaNI	GCATC	2 cut(s)	111, 183
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SspMI	CTAG	1 cut(s)	300
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	405
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	345, 436
Tru9I	TTAA	2 cut(s)	345, 436
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	215, 304
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	173
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.